Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00170 * 2 1 4 4 O 1.20823 * 119.99983 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47082 * 179.97438 * 5 3 2 7 7 N 1.46494 * 109.47093 * 179.97438 * 6 5 3 8 8 C 1.36931 * 120.00612 * 270.16158 * 7 6 5 9 9 H 1.07999 * 120.00223 * 136.17337 * 8 7 6 10 10 C 1.38997 * 119.99942 * 316.17898 * 8 7 6 11 11 N 1.31397 * 120.00307 * 169.92357 * 10 8 7 12 12 Si 1.86803 * 119.99822 * 349.92241 * 10 8 7 13 13 H 1.48504 * 109.47168 * 90.45782 * 12 10 8 14 14 H 1.48489 * 109.47282 * 210.46037 * 12 10 8 15 15 H 1.48500 * 109.47166 * 330.46058 * 12 10 8 16 16 C 1.34787 * 119.99983 * 90.15928 * 7 6 5 17 17 O 1.21662 * 119.99393 * 4.32007 * 16 7 6 18 18 C 1.47105 * 120.00247 * 184.32200 * 16 7 6 19 19 C 1.39938 * 120.15054 * 315.90548 * 18 16 7 20 20 C 1.36521 * 120.13047 * 180.02562 * 19 18 16 21 21 C 1.39206 * 120.43787 * 0.02562 * 20 19 18 22 22 O 1.35787 * 119.84796 * 179.97438 * 21 20 19 23 23 C 1.42900 * 116.99919 * 359.97438 * 22 21 20 24 24 C 1.38732 * 120.30270 * 0.25539 * 21 20 19 25 25 F 1.35103 * 120.06660 * 179.70432 * 24 21 20 26 26 C 1.38849 * 119.86573 * 359.44981 * 24 21 20 27 27 N 1.39062 * 120.22340 * 180.25008 * 26 24 21 28 28 H 1.08999 * 109.46792 * 59.99767 * 1 2 3 29 29 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47210 * 300.00636 * 1 2 3 31 31 H 1.09004 * 109.46675 * 60.00068 * 5 3 2 32 32 H 1.08998 * 109.47145 * 300.00343 * 5 3 2 33 33 H 1.09005 * 109.46635 * 60.00234 * 6 5 3 34 34 H 1.08992 * 109.47433 * 300.00266 * 6 5 3 35 35 H 0.96998 * 120.00177 * 180.02562 * 11 10 8 36 36 H 1.08004 * 119.93902 * 359.97438 * 19 18 16 37 37 H 1.08002 * 119.78609 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.47461 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.46987 * 60.00059 * 23 22 21 40 40 H 1.08999 * 109.47433 * 300.00321 * 23 22 21 41 41 H 0.97001 * 120.00535 * 185.20481 * 27 26 24 42 42 H 0.97006 * 119.99654 * 5.20546 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8186 0.0010 8 6 6.1462 2.8520 1.1873 9 1 7.0332 2.2496 1.3169 10 6 5.6979 3.6610 2.2248 11 7 6.2281 3.5487 3.4218 12 14 4.3415 4.9082 1.9174 13 1 3.0222 4.2799 2.1818 14 1 4.5254 6.0722 2.8208 15 1 4.3987 5.3637 0.5052 16 6 6.1370 2.8562 -1.1657 17 8 5.5286 2.9058 -2.2181 18 6 7.6079 2.8370 -1.1666 19 6 8.3218 3.6347 -0.2653 20 6 9.6869 3.6170 -0.2668 21 6 10.3807 2.8083 -1.1625 22 8 11.7385 2.8004 -1.1540 23 6 12.3862 3.6457 -0.2011 24 6 9.6913 2.0147 -2.0679 25 9 10.3696 1.2361 -2.9391 26 6 8.3028 2.0182 -2.0732 27 7 7.6042 1.2217 -2.9739 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 3.9564 0.7804 -0.8892 32 1 3.9557 0.7808 0.8908 33 1 3.6101 3.2366 0.8894 34 1 3.6109 3.2355 -0.8905 35 1 5.9150 4.1131 4.1459 36 1 7.7918 4.2662 0.4325 37 1 10.2322 4.2352 0.4310 38 1 13.4668 3.5440 -0.3003 39 1 12.0852 3.3556 0.8056 40 1 12.1004 4.6821 -0.3812 41 1 6.6376 1.2824 -3.0268 42 1 8.0837 0.6053 -3.5495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557989527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -178.591758 kcal Electronic energy + Delta-G solvation = -30314.957518 eV Core-core repulsion = 25789.124445 eV Total energy + Delta-G solvation = -4525.833073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.66267 -41.75659 -41.34560 -40.39629 -38.50911 -37.68386 -37.01842 -35.15689 -34.22928 -32.85784 -31.14222 -29.80745 -28.73858 -28.06212 -26.92140 -25.83152 -24.02297 -23.04264 -21.96323 -21.17401 -19.63792 -19.10377 -18.94575 -18.60337 -18.22862 -17.79748 -17.67774 -17.28939 -17.09267 -16.81231 -16.52773 -16.21831 -15.96219 -15.74945 -15.62997 -15.35478 -15.27399 -14.64720 -14.48747 -14.22776 -14.07996 -13.83037 -13.49517 -13.46804 -13.31309 -13.09651 -13.00982 -12.89584 -12.66664 -12.41687 -12.13005 -12.05087 -11.87246 -11.74010 -11.65224 -11.26311 -11.13355 -10.61105 -9.78764 -9.19533 -8.59443 -8.46786 -6.18923 0.08586 0.47645 1.05055 1.20354 1.32305 1.39786 1.53883 1.87860 2.12562 2.15552 2.52847 2.74544 2.96030 3.01793 3.35847 3.68443 3.81251 3.94390 3.98892 4.06837 4.22852 4.27389 4.28302 4.29636 4.40022 4.48401 4.51668 4.60633 4.66614 4.77711 4.81553 4.90298 5.11100 5.24960 5.25856 5.40857 5.52389 5.55430 6.08078 6.21095 6.28777 6.41188 6.61085 6.80883 6.92765 7.32490 7.67212 8.64421 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003917 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.137447 B = 7146.036403 C = 8682.329857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.540 6.540 5 C -0.116 4.116 6 C 0.109 3.891 7 N -0.465 5.465 8 C -0.328 4.328 9 H 0.097 0.903 10 C 0.046 3.954 11 N -0.888 5.888 12 Si 0.911 3.089 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.543 3.457 17 O -0.608 6.608 18 C -0.225 4.225 19 C 0.023 3.977 20 C -0.248 4.248 21 C 0.163 3.837 22 O -0.323 6.323 23 C 0.015 3.985 24 C -0.054 4.054 25 F -0.142 7.142 26 C 0.267 3.733 27 N -0.847 5.847 28 H 0.063 0.937 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.280 0.720 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.412 0.588 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -4.364 -4.842 7.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.430 6.430 5 C -0.154 4.154 6 C -0.014 4.014 7 N -0.185 5.185 8 C -0.456 4.456 9 H 0.114 0.886 10 C -0.159 4.159 11 N -0.525 5.525 12 Si 0.739 3.261 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.335 3.665 17 O -0.494 6.494 18 C -0.233 4.233 19 C 0.003 3.997 20 C -0.268 4.268 21 C 0.115 3.885 22 O -0.236 6.236 23 C -0.078 4.078 24 C -0.079 4.079 25 F -0.121 7.121 26 C 0.155 3.845 27 N -0.387 5.387 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.245 0.755 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.387 -4.125 -5.265 7.102 hybrid contribution -1.149 0.598 0.152 1.304 sum 1.238 -3.527 -5.113 6.333 Atomic orbital electron populations 1.23607 0.74610 1.05954 1.02550 1.86508 1.25240 1.32155 1.83645 1.23792 0.92063 0.81388 0.71006 1.90641 1.67921 1.37461 1.47016 1.21631 0.86983 0.99392 1.07398 1.21413 0.82706 0.95388 1.01892 1.43589 1.03903 1.65199 1.05784 1.18925 1.11956 1.25857 0.88820 0.88576 1.25639 0.98181 0.97120 0.94968 1.69675 1.42815 1.39028 1.00966 0.86421 0.80605 0.80459 0.78606 1.19993 1.20990 1.19605 1.18232 0.87359 0.77782 0.83159 1.90598 1.70703 1.56151 1.31981 1.18933 0.92665 1.08051 1.03636 1.20969 0.93451 0.93414 0.91851 1.20762 0.94453 1.06890 1.04697 1.18901 0.83442 0.93236 0.92937 1.86027 1.15060 1.64296 1.58225 1.23479 0.98823 0.94051 0.91496 1.15998 0.87172 1.05004 0.99699 1.91376 1.79553 1.73412 1.67759 1.17269 0.88510 0.89835 0.88876 1.42419 1.10904 1.43961 1.41449 0.91834 0.84458 0.92142 0.86211 0.86004 0.92074 0.90977 0.90972 0.84413 0.82238 0.85572 0.91506 0.91094 0.75468 0.76091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.16 10.57 -51.39 -0.54 -10.70 16 3 C 0.47 16.28 7.96 71.24 0.57 16.84 16 4 O -0.54 -21.58 15.73 21.97 0.35 -21.24 16 5 C -0.12 -4.06 6.14 29.85 0.18 -3.88 16 6 C 0.11 4.65 3.40 86.38 0.29 4.95 16 7 N -0.47 -20.77 2.13 -639.59 -1.36 -22.13 16 8 C -0.33 -15.56 6.87 84.08 0.58 -14.98 16 9 H 0.10 4.87 7.06 -2.91 -0.02 4.85 16 10 C 0.05 2.27 5.44 84.94 0.46 2.73 16 11 N -0.89 -45.46 13.96 21.67 0.30 -45.16 16 12 Si 0.91 41.38 24.72 68.60 1.70 43.08 16 13 H -0.27 -12.52 6.68 99.48 0.66 -11.86 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.27 -12.72 7.05 99.48 0.70 -12.02 16 16 C 0.54 23.81 6.86 86.57 0.59 24.41 16 17 O -0.61 -27.78 14.67 -4.23 -0.06 -27.84 16 18 C -0.22 -9.01 5.23 -19.98 -0.10 -9.11 16 19 C 0.02 0.86 7.88 22.28 0.18 1.03 16 20 C -0.25 -7.87 8.96 22.10 0.20 -7.67 16 21 C 0.16 5.27 6.69 22.62 0.15 5.42 16 22 O -0.32 -9.10 10.34 -91.16 -0.94 -10.04 16 23 C 0.02 0.28 9.80 113.37 1.11 1.39 16 24 C -0.05 -1.87 7.31 22.53 0.16 -1.71 16 25 F -0.14 -4.75 16.48 44.97 0.74 -4.01 16 26 C 0.27 9.68 6.75 38.70 0.26 9.94 16 27 N -0.85 -26.66 8.93 -50.77 -0.45 -27.12 16 28 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.26 8.13 -2.38 -0.02 1.24 16 31 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 33 H 0.06 2.79 3.01 -2.38 -0.01 2.78 16 34 H 0.07 3.21 7.32 -2.39 -0.02 3.19 16 35 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 36 H 0.14 5.63 6.50 -2.91 -0.02 5.61 16 37 H 0.16 4.10 6.26 -2.91 -0.02 4.08 16 38 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 40 H 0.07 1.12 7.65 -2.39 -0.02 1.11 16 41 H 0.41 13.64 6.42 -92.71 -0.60 13.05 16 42 H 0.41 10.61 8.32 -92.70 -0.77 9.84 16 Total: -1.00 -62.92 355.53 5.25 -57.67 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.30 Total: 36.42 kcal Atomic # 6 Polarization: 25.24 SS G_CDS: 5.83 Total: 31.07 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -1.51 Total: -94.40 kcal Atomic # 8 Polarization: -68.62 SS G_CDS: -1.20 Total: -69.82 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.74 Total: -4.01 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.70 Total: 43.08 kcal Total: -62.92 5.25 -57.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557989527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.923 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds