Wall clock time and date at job start Sat Apr 11 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47113 * 270.00274 * 3 2 1 5 5 H 1.48504 * 109.46818 * 30.00405 * 3 2 1 6 6 H 1.48499 * 109.47230 * 149.99959 * 3 2 1 7 7 C 1.38799 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00251 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99862 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 17 17 O 1.42893 * 110.72271 * 219.52456 * 15 14 13 18 18 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 19 19 H 1.09004 * 110.92671 * 277.25231 * 18 15 14 20 20 N 1.46505 * 111.03913 * 153.47072 * 18 15 14 21 21 C 1.34778 * 120.00074 * 161.22761 * 20 18 15 22 22 O 1.21279 * 119.99855 * 0.02562 * 21 20 18 23 23 C 1.50695 * 119.99695 * 179.97438 * 21 20 18 24 24 H 1.09005 * 115.55182 * 34.28537 * 23 21 20 25 25 C 1.52997 * 117.50122 * 248.60797 * 23 21 20 26 26 C 1.52998 * 117.49574 * 179.97438 * 23 21 20 27 27 C 1.52993 * 138.59018 * 336.60587 * 26 23 21 28 28 C 1.52989 * 138.59001 * 238.38097 * 26 23 21 29 29 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 30 30 H 0.96993 * 119.99756 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46773 * 60.00483 * 10 9 7 32 32 H 1.08995 * 109.47418 * 300.00222 * 10 9 7 33 33 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 34 34 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 35 35 H 0.96708 * 113.99585 * 298.54470 * 17 15 14 36 36 H 0.96998 * 119.99743 * 341.23259 * 20 18 15 37 37 H 1.08998 * 117.49979 * 0.02562 * 25 23 21 38 38 H 1.09002 * 117.50344 * 145.00321 * 25 23 21 39 39 H 1.08999 * 117.50101 * 336.59186 * 27 26 23 40 40 H 1.09000 * 117.49708 * 121.61144 * 27 26 23 41 41 H 1.09003 * 117.50125 * 238.38169 * 28 26 23 42 42 H 1.08994 * 117.50310 * 23.39073 * 28 26 23 43 43 H 1.08999 * 110.36956 * 322.93474 * 29 13 11 44 44 H 1.09001 * 110.36709 * 85.14667 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 4.3110 -6.2451 -0.0003 15 6 4.8698 -7.6834 0.0283 16 1 5.1143 -8.0223 -0.9784 17 8 6.0124 -7.7651 0.8824 18 6 3.6843 -8.5025 0.6105 19 1 3.6689 -8.4451 1.6990 20 7 3.7373 -9.8961 0.1617 21 6 3.0515 -10.8454 0.8287 22 8 2.3902 -10.5460 1.8003 23 6 3.1056 -12.2788 0.3666 24 1 4.0559 -12.5997 -0.0600 25 6 1.8279 -12.8798 -0.2225 26 6 2.3059 -13.3093 1.1662 27 6 1.7347 -13.4761 2.5757 28 6 2.5555 -14.6026 1.9445 29 6 2.4655 -7.7679 -0.0018 30 1 -0.4849 0.8400 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1245 -3.7314 -0.8904 33 1 4.6487 -5.7341 -0.9020 34 1 4.6458 -5.6998 0.8821 35 1 6.7526 -7.2087 0.6034 36 1 4.2660 -10.1355 -0.6155 37 1 0.9483 -12.2383 -0.2763 38 1 1.9375 -13.5961 -1.0368 39 1 2.1996 -12.9033 3.3781 40 1 0.6593 -13.6279 2.6681 41 1 2.0200 -15.4955 1.6219 42 1 3.5604 -14.7712 2.3315 43 1 1.5794 -7.9255 0.6130 44 1 2.2856 -8.1119 -1.0204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572858897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:36 Heat of formation + Delta-G solvation = -48.618182 kcal Electronic energy + Delta-G solvation = -26402.346135 eV Core-core repulsion = 22448.362315 eV Total energy + Delta-G solvation = -3953.983819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70970 -39.75001 -38.21338 -37.55564 -35.74318 -34.47650 -32.99942 -32.44594 -30.66491 -29.01570 -28.09914 -25.53448 -24.75809 -23.35635 -22.72146 -21.50337 -20.89466 -19.66620 -19.41949 -17.99500 -17.78942 -17.30918 -17.01802 -16.22662 -15.74413 -15.51992 -15.32558 -15.17152 -14.82332 -14.69217 -14.67173 -14.24492 -14.01652 -13.80665 -13.17981 -12.99194 -12.80257 -12.76611 -12.56155 -12.31189 -12.04724 -11.87508 -11.80409 -11.09668 -11.07500 -11.04295 -10.79702 -10.76626 -10.59701 -10.51934 -10.37619 -10.03189 -9.84437 -9.63267 -9.37585 -9.08300 -8.63057 -8.25989 -6.52599 -6.23170 -3.94329 2.16291 2.45253 2.86996 2.99538 3.20955 3.22908 3.28713 3.32008 3.42089 3.49855 3.67172 3.88747 4.03438 4.18320 4.26199 4.36560 4.43793 4.52130 4.66571 4.90656 4.97384 4.99532 5.05420 5.11874 5.14724 5.27145 5.28203 5.30751 5.31254 5.45451 5.53420 5.55046 5.62646 5.67377 5.73456 5.84972 5.85728 6.00689 6.08665 6.28341 7.11474 7.13447 7.52128 7.57854 7.91958 8.33338 8.46892 9.21871 10.84269 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.002005 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.382612 B =13962.496599 C =14709.957663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.550 3.450 12 O -0.508 6.508 13 N -0.623 5.623 14 C 0.073 3.927 15 C 0.089 3.911 16 H 0.081 0.919 17 O -0.551 6.551 18 C 0.143 3.857 19 H 0.113 0.887 20 N -0.716 5.716 21 C 0.543 3.457 22 O -0.523 6.523 23 C -0.142 4.142 24 H 0.125 0.875 25 C -0.099 4.099 26 C -0.202 4.202 27 C -0.113 4.113 28 C -0.129 4.129 29 C 0.101 3.899 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.385 0.615 36 H 0.403 0.597 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 -27.215 -2.265 30.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.339 3.661 12 O -0.382 6.382 13 N -0.362 5.362 14 C -0.052 4.052 15 C 0.028 3.972 16 H 0.099 0.901 17 O -0.357 6.357 18 C 0.037 3.963 19 H 0.131 0.869 20 N -0.368 5.368 21 C 0.329 3.671 22 O -0.398 6.398 23 C -0.163 4.163 24 H 0.142 0.858 25 C -0.137 4.137 26 C -0.203 4.203 27 C -0.150 4.150 28 C -0.166 4.166 29 C -0.024 4.024 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.234 0.766 36 H 0.237 0.763 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.803 -27.516 -1.214 29.586 hybrid contribution 2.811 1.703 -0.840 3.393 sum 13.615 -25.813 -2.054 29.256 Atomic orbital electron populations 1.70018 1.05954 1.27499 1.46721 1.25000 0.95040 0.99045 0.94513 0.86156 0.79403 0.81536 0.78329 1.20271 1.20719 1.19696 1.22848 0.94880 0.91567 1.59102 0.90914 1.85447 1.04766 0.96324 1.96715 1.23511 1.06616 0.94752 1.04843 1.20088 0.85652 0.85353 0.75037 1.90731 1.14799 1.84945 1.47679 1.48275 1.05922 1.05589 1.76406 1.22710 0.81721 0.97266 1.03460 1.23058 0.86327 0.93980 0.93793 0.90089 1.86584 1.25422 1.70001 1.53664 1.22084 0.92705 0.80028 1.01464 0.86889 1.45706 1.51385 1.06761 1.32937 1.19737 0.78672 0.85952 0.82740 1.90751 1.40355 1.82373 1.26295 1.21933 0.98520 0.90556 1.05321 0.85755 1.22693 0.95702 1.01191 0.94066 1.21165 1.05578 0.99853 0.93687 1.22624 0.99744 0.99772 0.92814 1.22774 1.01622 0.91117 1.01094 1.22492 0.98080 0.80443 1.01357 0.92143 0.89167 0.89248 0.90377 0.89848 0.76646 0.76259 0.87830 0.87455 0.88105 0.88371 0.88270 0.88524 0.89137 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.00 5.35 36.01 0.19 -2.80 16 11 C 0.55 10.76 7.87 -10.98 -0.09 10.67 16 12 O -0.51 -12.07 16.12 5.55 0.09 -11.98 16 13 N -0.62 -9.02 3.33 -170.51 -0.57 -9.59 16 14 C 0.07 0.73 6.25 -3.07 -0.02 0.71 16 15 C 0.09 0.68 3.97 -24.76 -0.10 0.59 16 16 H 0.08 0.42 8.00 -51.93 -0.42 0.01 16 17 O -0.55 -4.16 13.40 -35.23 -0.47 -4.63 16 18 C 0.14 1.48 3.05 -65.64 -0.20 1.28 16 19 H 0.11 1.49 7.73 -51.93 -0.40 1.08 16 20 N -0.72 -5.93 5.23 -51.59 -0.27 -6.20 16 21 C 0.54 5.71 7.61 -10.99 -0.08 5.63 16 22 O -0.52 -7.79 15.99 5.56 0.09 -7.70 16 23 C -0.14 -1.08 6.19 -91.78 -0.57 -1.65 16 24 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 25 C -0.10 -0.69 10.24 -26.72 -0.27 -0.96 16 26 C -0.20 -1.68 5.05 -154.51 -0.78 -2.47 16 27 C -0.11 -0.97 10.16 -26.73 -0.27 -1.24 16 28 C -0.13 -0.84 10.53 -26.73 -0.28 -1.12 16 29 C 0.10 1.30 6.60 -2.52 -0.02 1.28 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.39 1.21 9.11 45.56 0.42 1.63 16 36 H 0.40 2.02 8.52 -40.82 -0.35 1.67 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -38.50 391.72 -9.80 -48.30 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.78 Total: 1.89 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.10 Total: -41.24 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.29 Total: -24.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.50 -9.80 -48.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572858897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.319 kcal (2) G-P(sol) polarization free energy of solvation -38.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds