Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47113 * 270.00274 * 3 2 1 5 5 H 1.48504 * 109.46818 * 30.00405 * 3 2 1 6 6 H 1.48499 * 109.47230 * 149.99959 * 3 2 1 7 7 C 1.38799 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00251 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99862 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46889 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 H 1.09000 * 110.72188 * 96.24097 * 15 14 13 17 17 O 1.42893 * 110.72271 * 219.52456 * 15 14 13 18 18 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 19 19 H 1.09004 * 110.92671 * 277.25231 * 18 15 14 20 20 N 1.46505 * 111.03913 * 153.47072 * 18 15 14 21 21 C 1.34778 * 120.00074 * 161.22761 * 20 18 15 22 22 O 1.21279 * 119.99855 * 0.02562 * 21 20 18 23 23 C 1.50695 * 119.99695 * 179.97438 * 21 20 18 24 24 H 1.09005 * 115.55182 * 34.28537 * 23 21 20 25 25 C 1.52997 * 117.50122 * 248.60797 * 23 21 20 26 26 C 1.52998 * 117.49574 * 179.97438 * 23 21 20 27 27 C 1.52993 * 138.59018 * 336.60587 * 26 23 21 28 28 C 1.52989 * 138.59001 * 238.38097 * 26 23 21 29 29 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 30 30 H 0.96993 * 119.99756 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46773 * 60.00483 * 10 9 7 32 32 H 1.08995 * 109.47418 * 300.00222 * 10 9 7 33 33 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 34 34 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 35 35 H 0.96708 * 113.99585 * 298.54470 * 17 15 14 36 36 H 0.96998 * 119.99743 * 341.23259 * 20 18 15 37 37 H 1.08998 * 117.49979 * 0.02562 * 25 23 21 38 38 H 1.09002 * 117.50344 * 145.00321 * 25 23 21 39 39 H 1.08999 * 117.50101 * 336.59186 * 27 26 23 40 40 H 1.09000 * 117.49708 * 121.61144 * 27 26 23 41 41 H 1.09003 * 117.50125 * 238.38169 * 28 26 23 42 42 H 1.08994 * 117.50310 * 23.39073 * 28 26 23 43 43 H 1.08999 * 110.36956 * 322.93474 * 29 13 11 44 44 H 1.09001 * 110.36709 * 85.14667 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 4.3110 -6.2451 -0.0003 15 6 4.8698 -7.6834 0.0283 16 1 5.1143 -8.0223 -0.9784 17 8 6.0124 -7.7651 0.8824 18 6 3.6843 -8.5025 0.6105 19 1 3.6689 -8.4451 1.6990 20 7 3.7373 -9.8961 0.1617 21 6 3.0515 -10.8454 0.8287 22 8 2.3902 -10.5460 1.8003 23 6 3.1056 -12.2788 0.3666 24 1 4.0559 -12.5997 -0.0600 25 6 1.8279 -12.8798 -0.2225 26 6 2.3059 -13.3093 1.1662 27 6 1.7347 -13.4761 2.5757 28 6 2.5555 -14.6026 1.9445 29 6 2.4655 -7.7679 -0.0018 30 1 -0.4849 0.8400 0.0004 31 1 3.1244 -3.7314 0.8895 32 1 3.1245 -3.7314 -0.8904 33 1 4.6487 -5.7341 -0.9020 34 1 4.6458 -5.6998 0.8821 35 1 6.7526 -7.2087 0.6034 36 1 4.2660 -10.1355 -0.6155 37 1 0.9483 -12.2383 -0.2763 38 1 1.9375 -13.5961 -1.0368 39 1 2.1996 -12.9033 3.3781 40 1 0.6593 -13.6279 2.6681 41 1 2.0200 -15.4955 1.6219 42 1 3.5604 -14.7712 2.3315 43 1 1.5794 -7.9255 0.6130 44 1 2.2856 -8.1119 -1.0204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572858897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -79.267996 kcal Electronic energy + Delta-G solvation = -26403.675210 eV Core-core repulsion = 22448.362315 eV Total energy + Delta-G solvation = -3955.312895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64862 -40.78235 -39.29283 -38.30144 -36.61229 -35.46740 -34.59887 -33.62007 -31.97841 -30.07834 -29.22016 -27.68202 -25.65742 -24.23888 -23.29653 -22.29343 -21.66425 -20.93258 -20.18156 -19.65785 -18.69872 -18.28744 -18.03714 -17.36154 -16.90600 -16.84623 -16.63163 -16.12531 -15.94117 -15.87512 -15.54593 -15.38765 -15.19237 -14.86005 -14.52343 -14.29748 -13.94254 -13.69209 -13.56658 -13.38731 -13.32546 -13.16691 -12.89505 -12.67032 -12.62567 -12.38091 -11.88801 -11.76165 -11.50635 -11.21720 -11.15249 -11.12292 -10.99626 -10.95614 -10.80875 -10.37232 -10.30541 -9.83585 -8.70849 -8.35782 -6.15291 1.15570 1.36868 1.41377 1.42473 1.46022 1.54316 1.76059 2.08097 2.25698 2.71015 2.82291 2.94056 2.98541 3.09024 3.31043 3.34078 3.50657 3.73980 3.81884 3.84687 3.88291 4.05193 4.09368 4.17089 4.20997 4.39429 4.46483 4.53610 4.58786 4.60819 4.68588 4.73920 4.76229 4.80581 4.83199 5.00413 5.02989 5.05788 5.25411 5.32203 5.40515 6.18143 6.20796 6.45217 6.82051 6.98757 7.05148 7.17545 8.73590 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024000 B = 0.002005 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.382612 B =13962.496599 C =14709.957663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.155 6.155 10 C -0.117 4.117 11 C 0.547 3.453 12 O -0.565 6.565 13 N -0.613 5.613 14 C 0.061 3.939 15 C 0.112 3.888 16 H 0.124 0.876 17 O -0.564 6.564 18 C 0.147 3.853 19 H 0.080 0.920 20 N -0.697 5.697 21 C 0.535 3.465 22 O -0.577 6.577 23 C -0.138 4.138 24 H 0.160 0.840 25 C -0.088 4.088 26 C -0.230 4.230 27 C -0.141 4.141 28 C -0.101 4.101 29 C 0.101 3.899 30 H 0.271 0.729 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.407 0.593 36 H 0.424 0.576 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.050 0.950 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.864 -28.298 -4.170 33.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.072 5.928 10 C -0.268 4.268 11 C 0.335 3.665 12 O -0.443 6.443 13 N -0.350 5.350 14 C -0.061 4.061 15 C 0.051 3.949 16 H 0.141 0.859 17 O -0.373 6.373 18 C 0.040 3.960 19 H 0.098 0.902 20 N -0.350 5.350 21 C 0.323 3.677 22 O -0.456 6.456 23 C -0.158 4.158 24 H 0.178 0.822 25 C -0.125 4.125 26 C -0.231 4.231 27 C -0.177 4.177 28 C -0.138 4.138 29 C -0.023 4.023 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.260 0.740 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.093 -28.639 -3.158 32.526 hybrid contribution 1.560 1.919 -0.198 2.480 sum 16.652 -26.720 -3.356 31.663 Atomic orbital electron populations 1.70194 1.08069 1.28652 1.47941 1.26176 0.95985 1.03449 0.93686 0.84915 0.78170 0.75779 0.78870 1.19109 1.20470 1.18047 1.23188 0.95396 0.91649 1.58973 0.89608 1.85690 1.10563 0.99472 1.97063 1.23290 1.03498 0.93266 1.06788 1.19922 0.85378 0.86067 0.75124 1.90709 1.17212 1.85689 1.50703 1.48140 1.07801 1.05120 1.73899 1.23163 0.78379 0.99586 1.05003 1.22927 0.85354 0.91318 0.95255 0.85859 1.86553 1.25908 1.70642 1.54192 1.21792 0.93213 0.81333 0.99632 0.90226 1.45523 1.50809 1.05461 1.33171 1.20412 0.77743 0.87524 0.82035 1.90739 1.42684 1.83367 1.28824 1.22034 1.00363 0.88186 1.05242 0.82219 1.22776 0.94599 1.01008 0.94165 1.21463 1.06585 1.01196 0.93837 1.22585 0.99963 1.02043 0.93160 1.22838 1.01641 0.90608 0.98693 1.22551 0.98060 0.79881 1.01836 0.91990 0.87481 0.86617 0.87431 0.89731 0.74037 0.73739 0.89619 0.84316 0.90285 0.88631 0.86402 0.87525 0.93142 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.54 -31.03 9.50 67.95 0.65 -30.39 16 8 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.12 -4.74 5.35 71.24 0.38 -4.36 16 11 C 0.55 21.68 7.87 87.66 0.69 22.37 16 12 O -0.57 -28.27 16.12 -3.05 -0.05 -28.32 16 13 N -0.61 -17.29 3.33 -811.75 -2.70 -19.99 16 14 C 0.06 1.03 6.25 86.73 0.54 1.57 16 15 C 0.11 1.30 3.97 31.87 0.13 1.43 16 16 H 0.12 0.53 8.00 -2.39 -0.02 0.51 16 17 O -0.56 -6.36 13.40 -148.98 -2.00 -8.36 16 18 C 0.15 2.90 3.05 46.48 0.14 3.04 16 19 H 0.08 2.16 7.73 -2.39 -0.02 2.14 16 20 N -0.70 -10.24 5.23 -435.52 -2.28 -12.52 16 21 C 0.53 11.06 7.61 87.66 0.67 11.73 16 22 O -0.58 -18.29 15.99 -3.03 -0.05 -18.34 16 23 C -0.14 -1.83 6.19 -11.54 -0.07 -1.90 16 24 H 0.16 0.96 8.14 -2.38 -0.02 0.94 16 25 C -0.09 -1.08 10.24 30.60 0.31 -0.76 16 26 C -0.23 -3.61 5.05 -52.18 -0.26 -3.88 16 27 C -0.14 -2.56 10.16 30.59 0.31 -2.24 16 28 C -0.10 -1.16 10.53 30.59 0.32 -0.83 16 29 C 0.10 2.61 6.60 86.86 0.57 3.19 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 32 H 0.12 4.05 8.14 -2.40 -0.02 4.03 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 35 H 0.41 0.69 9.11 -74.05 -0.67 0.02 16 36 H 0.42 2.61 8.52 -92.71 -0.79 1.82 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 44 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -91.33 391.72 -1.50 -92.83 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -0.43 Total: 15.27 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 4.84 Total: 0.08 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -4.69 Total: -88.65 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -2.09 Total: -55.02 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -91.33 -1.50 -92.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572858897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.565 kcal (2) G-P(sol) polarization free energy of solvation -91.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds