Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46991 * 2 1 4 4 O 1.45200 * 109.47129 * 119.99721 * 2 1 3 5 5 C 1.34225 * 116.99851 * 270.00169 * 4 2 1 6 6 O 1.20826 * 120.00560 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00099 * 180.02562 * 5 4 2 8 8 N 1.46498 * 109.47479 * 180.02562 * 7 5 4 9 9 C 1.34776 * 126.58609 * 124.98428 * 8 7 5 10 10 C 1.36675 * 106.83535 * 180.02562 * 9 8 7 11 11 C 1.47382 * 125.78348 * 179.97438 * 10 9 8 12 12 O 1.21523 * 119.99898 * 0.02562 * 11 10 9 13 13 O 1.34748 * 120.00066 * 180.02562 * 11 10 9 14 14 N 1.34443 * 108.43516 * 359.97438 * 10 9 8 15 15 N 1.28756 * 109.51710 * 359.97438 * 14 10 9 16 16 C 1.50694 * 109.47489 * 240.00090 * 2 1 3 17 17 O 1.21284 * 119.99755 * 256.03231 * 16 2 1 18 18 N 1.34781 * 120.00492 * 76.02160 * 16 2 1 19 19 C 1.46503 * 119.99452 * 5.36618 * 18 16 2 20 20 C 1.46497 * 120.00255 * 185.37067 * 18 16 2 21 21 C 1.50700 * 109.47428 * 90.00129 * 20 18 16 22 22 H 1.07996 * 119.99812 * 359.97438 * 21 20 18 23 23 C 1.37867 * 120.00125 * 180.02562 * 21 20 18 24 24 N 1.31515 * 120.00369 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00141 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46990 * 89.99850 * 25 23 21 27 27 H 1.48503 * 109.47165 * 210.00355 * 25 23 21 28 28 H 1.48502 * 109.46754 * 330.00168 * 25 23 21 29 29 H 1.09003 * 109.47199 * 66.13767 * 1 2 3 30 30 H 1.09002 * 109.46718 * 186.14072 * 1 2 3 31 31 H 1.09003 * 109.47311 * 306.14087 * 1 2 3 32 32 H 1.08999 * 109.47250 * 59.99753 * 7 5 4 33 33 H 1.08997 * 109.47066 * 300.00167 * 7 5 4 34 34 H 1.07999 * 126.58523 * 359.97438 * 9 8 7 35 35 H 0.96702 * 116.99653 * 180.02562 * 13 11 10 36 36 H 1.09003 * 109.46612 * 84.82075 * 19 18 16 37 37 H 1.09002 * 109.46901 * 204.82239 * 19 18 16 38 38 H 1.09001 * 109.47168 * 324.82731 * 19 18 16 39 39 H 1.09003 * 109.46518 * 210.00095 * 20 18 16 40 40 H 1.08998 * 109.46800 * 329.99551 * 20 18 16 41 41 H 0.96994 * 120.00542 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 0.0641 2.2811 6 8 1.9973 1.2518 2.2506 7 6 2.7193 -0.5768 3.5492 8 7 2.8570 0.4439 4.5910 9 6 2.2954 0.4224 5.8160 10 6 2.6878 1.5670 6.4515 11 6 2.3104 1.9660 7.8192 12 8 1.5885 1.2492 8.4838 13 8 2.7658 3.1257 8.3325 14 7 3.4764 2.2673 5.6177 15 7 3.5992 1.6305 4.5054 16 6 2.0324 -0.7103 -1.2304 17 8 2.4736 -1.8367 -1.1426 18 7 1.9913 -0.0942 -2.4284 19 6 1.5690 1.3058 -2.5178 20 6 2.3689 -0.8243 -3.6410 21 6 1.1507 -1.4919 -4.2253 22 1 0.1913 -1.3836 -3.7414 23 6 1.2612 -2.2419 -5.3768 24 7 0.1980 -2.8241 -5.8870 25 14 2.9208 -2.4300 -6.2134 26 1 3.6185 -3.6215 -5.6667 27 1 2.7219 -2.6001 -7.6752 28 1 3.7414 -1.2178 -5.9632 29 1 -0.3634 0.4157 -0.9398 30 1 -0.3633 -1.0218 0.1099 31 1 -0.3634 0.6061 0.8299 32 1 3.6884 -1.0398 3.3632 33 1 2.0106 -1.3370 3.8774 34 1 1.6571 -0.3505 6.2179 35 1 2.4916 3.3445 9.2337 36 1 2.4229 1.9558 -2.3267 37 1 1.1774 1.5041 -3.5156 38 1 0.7925 1.4991 -1.7777 39 1 2.7861 -0.1285 -4.3689 40 1 3.1137 -1.5804 -3.3928 41 1 0.2758 -3.3521 -6.6970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609799998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -118.974075 kcal Electronic energy + Delta-G solvation = -28735.919680 eV Core-core repulsion = 24232.591786 eV Total energy + Delta-G solvation = -4503.327894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.47216 -42.03236 -40.90169 -40.60665 -37.92958 -37.13945 -36.75243 -35.85864 -34.82283 -33.27824 -32.31083 -30.44849 -30.00497 -27.64936 -26.10294 -25.65827 -24.71994 -23.58427 -22.49598 -21.91605 -20.45735 -19.53828 -19.26447 -19.14272 -18.69810 -18.11506 -17.82878 -17.57618 -17.18704 -16.91388 -16.68560 -16.38670 -16.15300 -15.88443 -15.62561 -15.14784 -14.80652 -14.65464 -14.38143 -14.30656 -14.00608 -13.75836 -13.63623 -13.45983 -13.25256 -13.18980 -12.89942 -12.66597 -12.62341 -12.50660 -12.46536 -12.14988 -12.06013 -12.03195 -11.93609 -11.74901 -11.52463 -10.83567 -10.72481 -10.57081 -9.52759 -8.34265 -6.39914 -0.13724 0.33812 0.59456 0.84980 1.27754 1.35060 1.37658 1.45783 1.50959 1.90079 1.95059 2.23926 2.30895 2.99904 3.11330 3.21380 3.31123 3.48851 3.71154 3.74957 3.77172 3.97068 4.01945 4.23505 4.26234 4.46460 4.51945 4.58168 4.64418 4.74613 4.82528 4.90046 5.04539 5.08887 5.15281 5.41999 5.46318 5.49147 6.19898 6.34612 6.50184 6.61732 6.69053 6.98820 7.11050 7.26735 8.81944 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.001919 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.622075 B =14590.020370 C =14609.027674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.086 3.914 3 H 0.121 0.879 4 O -0.331 6.331 5 C 0.448 3.552 6 O -0.512 6.512 7 C 0.134 3.866 8 N -0.354 5.354 9 C 0.141 3.859 10 C -0.120 4.120 11 C 0.586 3.414 12 O -0.530 6.530 13 O -0.501 6.501 14 N -0.209 5.209 15 N -0.069 5.069 16 C 0.504 3.496 17 O -0.570 6.570 18 N -0.598 5.598 19 C 0.065 3.935 20 C 0.222 3.778 21 C -0.538 4.538 22 H 0.035 0.965 23 C 0.014 3.986 24 N -0.942 5.942 25 Si 0.944 3.056 26 H -0.276 1.276 27 H -0.277 1.277 28 H -0.238 1.238 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.174 0.826 33 H 0.208 0.792 34 H 0.260 0.740 35 H 0.438 0.562 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 8.757 25.851 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.027 3.973 3 H 0.139 0.861 4 O -0.246 6.246 5 C 0.290 3.710 6 O -0.399 6.399 7 C 0.014 3.986 8 N -0.138 5.138 9 C -0.016 4.016 10 C -0.256 4.256 11 C 0.428 3.572 12 O -0.419 6.419 13 O -0.314 6.314 14 N -0.084 5.084 15 N -0.050 5.050 16 C 0.291 3.709 17 O -0.450 6.450 18 N -0.330 5.330 19 C -0.077 4.077 20 C 0.101 3.899 21 C -0.576 4.576 22 H 0.054 0.946 23 C -0.185 4.185 24 N -0.581 5.581 25 Si 0.767 3.233 26 H -0.201 1.201 27 H -0.202 1.202 28 H -0.162 1.162 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.191 0.809 33 H 0.225 0.775 34 H 0.276 0.724 35 H 0.300 0.700 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.898 9.004 24.555 26.609 hybrid contribution -0.571 -0.685 0.066 0.894 sum 4.327 8.320 24.621 26.347 Atomic orbital electron populations 1.22160 0.90144 1.04295 1.05099 1.22502 0.97093 0.97040 0.80633 0.86099 1.86585 1.76742 1.41636 1.19648 1.24069 0.74678 0.86004 0.86286 1.90779 1.47722 1.17231 1.84183 1.21860 1.10144 0.86735 0.79889 1.50160 1.33941 1.17778 1.11920 1.24081 0.94801 0.98920 0.83758 1.20546 1.10537 0.97799 0.96732 1.18934 0.75551 0.78624 0.84041 1.90942 1.36425 1.53893 1.60651 1.84610 1.70203 1.37946 1.38637 1.74807 1.12057 1.23235 0.98273 1.82232 1.15425 0.92470 1.14901 1.20564 0.78963 0.86366 0.85053 1.90659 1.47413 1.20545 1.86340 1.47828 1.65208 1.13776 1.06176 1.22185 1.01187 0.79515 1.04772 1.19451 0.95027 0.92693 0.82775 1.21517 0.94970 1.31586 1.09553 0.94644 1.25797 1.00761 0.94335 0.97597 1.70030 1.31441 1.34124 1.22543 0.85766 0.79578 0.80188 0.77749 1.20126 1.20185 1.16162 0.89234 0.91365 0.88756 0.80859 0.77520 0.72389 0.69967 0.90192 0.90086 0.89577 0.92706 0.95880 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.19 71.98 0.66 -3.22 16 2 C 0.09 2.41 2.14 29.85 0.06 2.47 16 3 H 0.12 3.04 6.31 -2.38 -0.02 3.03 16 4 O -0.33 -8.31 9.47 -45.17 -0.43 -8.73 16 5 C 0.45 8.67 7.97 71.24 0.57 9.24 16 6 O -0.51 -13.21 14.95 21.96 0.33 -12.88 16 7 C 0.13 1.08 7.13 85.63 0.61 1.69 16 8 N -0.35 -4.91 3.41 -350.80 -1.20 -6.10 16 9 C 0.14 1.45 11.27 83.87 0.95 2.39 16 10 C -0.12 -2.10 7.02 40.79 0.29 -1.82 16 11 C 0.59 9.50 8.33 70.23 0.59 10.09 16 12 O -0.53 -9.72 17.65 19.76 0.35 -9.37 16 13 O -0.50 -6.43 13.43 -56.59 -0.76 -7.19 16 14 N -0.21 -4.97 12.39 -50.03 -0.62 -5.59 16 15 N -0.07 -1.63 12.89 37.02 0.48 -1.15 16 16 C 0.50 19.61 6.95 87.65 0.61 20.22 16 17 O -0.57 -27.35 16.13 15.22 0.25 -27.10 16 18 N -0.60 -23.13 2.86 -851.12 -2.43 -25.56 16 19 C 0.07 1.77 9.79 127.77 1.25 3.02 16 20 C 0.22 10.37 4.25 85.63 0.36 10.73 16 21 C -0.54 -30.27 9.94 25.60 0.25 -30.02 16 22 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 23 C 0.01 0.78 5.47 84.65 0.46 1.24 16 24 N -0.94 -57.70 13.96 21.44 0.30 -57.41 16 25 Si 0.94 42.98 27.47 68.60 1.88 44.87 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 29 H 0.09 2.19 6.33 -2.39 -0.02 2.17 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.17 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.21 -0.56 8.08 -2.39 -0.02 -0.58 16 34 H 0.26 -0.06 8.06 -2.91 -0.02 -0.09 16 35 H 0.44 0.87 9.11 -74.06 -0.67 0.19 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 38 H 0.09 1.92 4.92 -2.39 -0.01 1.91 16 39 H 0.06 2.33 7.13 -2.39 -0.02 2.32 16 40 H 0.02 1.16 6.78 -2.39 -0.02 1.14 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -92.78 368.50 5.19 -87.59 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 0.38 Total: 2.59 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 6.66 Total: 26.04 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -3.47 Total: -95.81 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -0.27 Total: -65.28 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.87 kcal Total: -92.78 5.19 -87.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609799998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.386 kcal (2) G-P(sol) polarization free energy of solvation -92.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds