Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99832 * 2 1 4 4 O 1.20828 * 119.99636 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47367 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47257 * 180.02562 * 6 5 3 8 8 C 1.37105 * 120.00050 * 270.00503 * 7 6 5 9 9 H 1.07992 * 120.00209 * 145.32508 * 8 7 6 10 10 C 1.38946 * 119.99755 * 325.32294 * 8 7 6 11 11 N 1.31411 * 120.00217 * 337.24585 * 10 8 7 12 12 Si 1.86799 * 119.99926 * 157.24418 * 10 8 7 13 13 H 1.48501 * 109.47410 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46931 * 119.99962 * 12 10 8 15 15 H 1.48504 * 109.47317 * 240.00011 * 12 10 8 16 16 C 1.34774 * 120.00378 * 90.00225 * 7 6 5 17 17 O 1.21297 * 119.99582 * 4.88444 * 16 7 6 18 18 C 1.50698 * 120.00448 * 184.88285 * 16 7 6 19 19 C 1.52998 * 109.47116 * 177.73755 * 18 16 7 20 20 N 1.46503 * 109.47280 * 180.02562 * 19 18 16 21 21 C 1.34941 * 126.03861 * 125.02200 * 20 19 18 22 22 C 1.35323 * 107.74661 * 180.02562 * 21 20 19 23 23 N 1.48017 * 126.04260 * 180.02562 * 22 21 20 24 24 O 1.21795 * 119.99970 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99603 * 359.97438 * 23 22 21 26 26 C 1.39875 * 107.91637 * 0.02562 * 22 21 20 27 27 N 1.30838 * 108.20527 * 359.97438 * 26 22 21 28 28 H 1.08996 * 109.47314 * 299.99798 * 1 2 3 29 29 H 1.09004 * 109.47126 * 60.00213 * 1 2 3 30 30 H 1.09001 * 109.46596 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47035 * 60.00299 * 5 3 2 32 32 H 1.09003 * 109.47455 * 300.00388 * 5 3 2 33 33 H 1.09003 * 109.46626 * 60.00260 * 6 5 3 34 34 H 1.08999 * 109.47450 * 300.00182 * 6 5 3 35 35 H 0.97003 * 120.00336 * 184.95545 * 11 10 8 36 36 H 1.08996 * 109.46678 * 57.73823 * 18 16 7 37 37 H 1.08996 * 109.47123 * 297.73899 * 18 16 7 38 38 H 1.08998 * 109.47378 * 59.99678 * 19 18 16 39 39 H 1.09005 * 109.47431 * 300.00082 * 19 18 16 40 40 H 1.08004 * 126.12855 * 359.97438 * 21 20 19 41 41 H 1.08000 * 125.89290 * 180.26723 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1476 2.8553 1.1871 9 1 7.1103 2.3730 1.2704 10 6 5.6028 3.5128 2.2832 11 7 4.7002 4.4510 2.1048 12 14 6.1535 3.0630 4.0106 13 1 7.1720 1.9846 3.9405 14 1 6.7419 4.2569 4.6692 15 1 4.9847 2.5904 4.7955 16 6 6.1360 2.8536 -1.1674 17 8 5.5290 2.9108 -2.2160 18 6 7.6427 2.8214 -1.1698 19 6 8.1504 2.8143 -2.6131 20 7 9.6150 2.7824 -2.6154 21 6 10.3883 1.8734 -3.2454 22 6 11.6808 2.1921 -3.0023 23 7 12.8669 1.4609 -3.5017 24 8 13.9857 1.8467 -3.2142 25 8 12.7238 0.4733 -4.2001 26 6 11.6978 3.3347 -2.1956 27 7 10.4601 3.6895 -1.9632 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.9564 0.7807 -0.8892 32 1 3.9558 0.7810 0.8908 33 1 3.6099 3.2368 0.8894 34 1 3.6107 3.2357 -0.8906 35 1 4.3726 4.9595 2.8631 36 1 7.9876 1.9225 -0.6589 37 1 8.0257 3.7020 -0.6542 38 1 7.8053 3.7131 -3.1240 39 1 7.7673 1.9336 -3.1287 40 1 10.0383 1.0403 -3.8369 41 1 12.5804 3.8398 -1.8317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624565489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -41.340881 kcal Electronic energy + Delta-G solvation = -28812.429960 eV Core-core repulsion = 24312.468493 eV Total energy + Delta-G solvation = -4499.961466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.44745 -41.37338 -40.17869 -38.95017 -36.47964 -36.34485 -35.40274 -34.39751 -32.18314 -31.44918 -31.21672 -30.06829 -27.65680 -26.29134 -25.27646 -24.85487 -23.05629 -21.68838 -21.33818 -20.34483 -19.38527 -18.99700 -18.46100 -17.63897 -17.51140 -17.20677 -16.50196 -16.37323 -16.24498 -15.96932 -15.61093 -14.89992 -14.72528 -14.49556 -14.34405 -13.69943 -13.64491 -13.43029 -12.97224 -12.65895 -12.38222 -12.26392 -12.15620 -11.90119 -11.71698 -11.54328 -11.41839 -11.26492 -11.12997 -11.08184 -10.91648 -10.89376 -10.64955 -10.54418 -10.26434 -10.16528 -10.12315 -9.62716 -9.42918 -8.81852 -7.84529 -6.61866 -4.32221 0.22838 1.20107 1.34138 2.14010 2.18493 2.54291 2.91875 2.94370 3.08703 3.10888 3.53538 3.82877 3.93822 4.15749 4.43648 4.52213 4.71869 4.82823 4.98172 5.04524 5.15027 5.17882 5.22024 5.36729 5.53640 5.61140 5.63167 5.70962 5.90617 5.95726 6.10757 6.18573 6.28679 6.41260 6.60378 6.68986 6.92263 7.11517 7.28214 7.60180 7.70607 8.04840 8.07999 8.78893 9.14420 9.57961 10.39238 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.002625 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.316961 B =10665.441032 C =12122.609766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.123 4.123 6 C 0.121 3.879 7 N -0.428 5.428 8 C -0.359 4.359 9 H 0.095 0.905 10 C 0.050 3.950 11 N -0.847 5.847 12 Si 0.914 3.086 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.277 1.277 16 C 0.472 3.528 17 O -0.608 6.608 18 C -0.131 4.131 19 C 0.139 3.861 20 N -0.333 5.333 21 C 0.154 3.846 22 C -0.202 4.202 23 N 0.074 4.926 24 O -0.171 6.171 25 O -0.182 6.182 26 C 0.107 3.893 27 N -0.258 5.258 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.275 0.725 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.204 0.796 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -6.637 -4.507 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.162 4.162 6 C -0.003 4.003 7 N -0.145 5.145 8 C -0.486 4.486 9 H 0.112 0.888 10 C -0.159 4.159 11 N -0.481 5.481 12 Si 0.739 3.261 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.203 1.203 16 C 0.260 3.740 17 O -0.495 6.495 18 C -0.172 4.172 19 C 0.020 3.980 20 N -0.110 5.110 21 C -0.002 4.002 22 C -0.300 4.300 23 N 0.588 4.412 24 O -0.384 6.384 25 O -0.392 6.392 26 C -0.082 4.082 27 N -0.077 5.077 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.221 0.779 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.765 -4.999 -4.040 6.472 hybrid contribution 0.844 -0.893 0.561 1.350 sum 1.608 -5.891 -3.478 7.028 Atomic orbital electron populations 1.23182 0.77212 1.03113 1.02391 1.86534 1.22861 1.34317 1.84633 1.24006 0.92333 0.80953 0.71850 1.90661 1.67243 1.36226 1.44933 1.21851 0.86064 1.03097 1.05169 1.21277 0.81806 0.91241 1.05969 1.43368 1.04667 1.61712 1.04724 1.19456 1.05518 1.36509 0.87099 0.88772 1.25388 0.96156 0.93799 1.00506 1.69845 1.28735 1.17093 1.32470 0.86086 0.78912 0.79045 0.82011 1.19005 1.20402 1.20259 1.19966 0.88349 0.81308 0.84390 1.90574 1.70243 1.56877 1.31811 1.21586 0.95708 1.05684 0.94204 1.22060 0.69171 1.06364 1.00362 1.49268 1.08395 1.18697 1.34688 1.22408 0.89203 0.94451 0.94186 1.21048 0.86089 1.04700 1.18194 1.42464 1.01337 0.99382 0.97972 1.94533 1.09909 1.71546 1.62424 1.94536 1.93083 1.16087 1.35506 1.23985 0.96961 0.92815 0.94475 1.77860 0.99082 1.13358 1.17423 0.92109 0.92134 0.88547 0.88607 0.87656 0.86191 0.91256 0.91449 0.89449 0.87536 0.87421 0.86955 0.77931 0.77574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.58 10.57 -39.26 -0.41 -6.00 16 3 C 0.47 8.37 7.96 36.00 0.29 8.66 16 4 O -0.50 -10.42 15.73 -18.75 -0.29 -10.71 16 5 C -0.12 -2.23 6.13 -27.89 -0.17 -2.40 16 6 C 0.12 2.67 4.34 -4.04 -0.02 2.65 16 7 N -0.43 -9.44 2.54 -114.81 -0.29 -9.73 16 8 C -0.36 -8.03 8.73 -14.93 -0.13 -8.16 16 9 H 0.09 2.00 6.95 -52.49 -0.36 1.63 16 10 C 0.05 1.15 4.95 -17.47 -0.09 1.06 16 11 N -0.85 -20.99 11.34 55.50 0.63 -20.36 16 12 Si 0.91 17.96 29.61 -169.99 -5.03 12.92 16 13 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 14 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 15 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 16 C 0.47 9.60 7.62 -10.99 -0.08 9.52 16 17 O -0.61 -13.42 15.54 5.54 0.09 -13.33 16 18 C -0.13 -2.10 4.51 -27.88 -0.13 -2.23 16 19 C 0.14 1.77 5.80 -4.04 -0.02 1.75 16 20 N -0.33 -4.01 3.68 -61.36 -0.23 -4.23 16 21 C 0.15 1.59 11.13 -17.22 -0.19 1.40 16 22 C -0.20 -2.40 7.11 -80.37 -0.57 -2.97 16 23 N 0.07 1.00 4.45 33.75 0.15 1.15 16 24 O -0.17 -2.41 19.05 -29.46 -0.56 -2.97 16 25 O -0.18 -2.54 19.02 -29.46 -0.56 -3.10 16 26 C 0.11 1.22 11.75 -17.36 -0.20 1.02 16 27 N -0.26 -3.42 12.42 30.63 0.38 -3.04 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.12 2.94 5.32 -51.93 -0.28 2.66 16 34 H 0.07 1.64 7.32 -51.93 -0.38 1.26 16 35 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 36 H 0.09 1.32 7.68 -51.93 -0.40 0.92 16 37 H 0.11 1.86 8.09 -51.93 -0.42 1.43 16 38 H 0.11 1.44 8.08 -51.93 -0.42 1.02 16 39 H 0.11 1.20 8.05 -51.93 -0.42 0.79 16 40 H 0.20 1.41 8.06 -52.48 -0.42 0.99 16 41 H 0.21 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -29.76 372.46 -5.55 -35.30 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.77 Total: 6.72 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.25 Total: 11.76 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.64 Total: -36.21 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -1.75 Total: -36.11 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.76 -5.55 -35.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624565489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.038 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds