Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 116.99832 * 2 1 4 4 O 1.20828 * 119.99636 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00148 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47367 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.47257 * 180.02562 * 6 5 3 8 8 C 1.37105 * 120.00050 * 270.00503 * 7 6 5 9 9 H 1.07992 * 120.00209 * 145.32508 * 8 7 6 10 10 C 1.38946 * 119.99755 * 325.32294 * 8 7 6 11 11 N 1.31411 * 120.00217 * 337.24585 * 10 8 7 12 12 Si 1.86799 * 119.99926 * 157.24418 * 10 8 7 13 13 H 1.48501 * 109.47410 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46931 * 119.99962 * 12 10 8 15 15 H 1.48504 * 109.47317 * 240.00011 * 12 10 8 16 16 C 1.34774 * 120.00378 * 90.00225 * 7 6 5 17 17 O 1.21297 * 119.99582 * 4.88444 * 16 7 6 18 18 C 1.50698 * 120.00448 * 184.88285 * 16 7 6 19 19 C 1.52998 * 109.47116 * 177.73755 * 18 16 7 20 20 N 1.46503 * 109.47280 * 180.02562 * 19 18 16 21 21 C 1.34941 * 126.03861 * 125.02200 * 20 19 18 22 22 C 1.35323 * 107.74661 * 180.02562 * 21 20 19 23 23 N 1.48017 * 126.04260 * 180.02562 * 22 21 20 24 24 O 1.21795 * 119.99970 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99603 * 359.97438 * 23 22 21 26 26 C 1.39875 * 107.91637 * 0.02562 * 22 21 20 27 27 N 1.30838 * 108.20527 * 359.97438 * 26 22 21 28 28 H 1.08996 * 109.47314 * 299.99798 * 1 2 3 29 29 H 1.09004 * 109.47126 * 60.00213 * 1 2 3 30 30 H 1.09001 * 109.46596 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47035 * 60.00299 * 5 3 2 32 32 H 1.09003 * 109.47455 * 300.00388 * 5 3 2 33 33 H 1.09003 * 109.46626 * 60.00260 * 6 5 3 34 34 H 1.08999 * 109.47450 * 300.00182 * 6 5 3 35 35 H 0.97003 * 120.00336 * 184.95545 * 11 10 8 36 36 H 1.08996 * 109.46678 * 57.73823 * 18 16 7 37 37 H 1.08996 * 109.47123 * 297.73899 * 18 16 7 38 38 H 1.08998 * 109.47378 * 59.99678 * 19 18 16 39 39 H 1.09005 * 109.47431 * 300.00082 * 19 18 16 40 40 H 1.08004 * 126.12855 * 359.97438 * 21 20 19 41 41 H 1.08000 * 125.89290 * 180.26723 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1476 2.8553 1.1871 9 1 7.1103 2.3730 1.2704 10 6 5.6028 3.5128 2.2832 11 7 4.7002 4.4510 2.1048 12 14 6.1535 3.0630 4.0106 13 1 7.1720 1.9846 3.9405 14 1 6.7419 4.2569 4.6692 15 1 4.9847 2.5904 4.7955 16 6 6.1360 2.8536 -1.1674 17 8 5.5290 2.9108 -2.2160 18 6 7.6427 2.8214 -1.1698 19 6 8.1504 2.8143 -2.6131 20 7 9.6150 2.7824 -2.6154 21 6 10.3883 1.8734 -3.2454 22 6 11.6808 2.1921 -3.0023 23 7 12.8669 1.4609 -3.5017 24 8 13.9857 1.8467 -3.2142 25 8 12.7238 0.4733 -4.2001 26 6 11.6978 3.3347 -2.1956 27 7 10.4601 3.6895 -1.9632 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.9564 0.7807 -0.8892 32 1 3.9558 0.7810 0.8908 33 1 3.6099 3.2368 0.8894 34 1 3.6107 3.2357 -0.8906 35 1 4.3726 4.9595 2.8631 36 1 7.9876 1.9225 -0.6589 37 1 8.0257 3.7020 -0.6542 38 1 7.8053 3.7131 -3.1240 39 1 7.7673 1.9336 -3.1287 40 1 10.0383 1.0403 -3.8369 41 1 12.5804 3.8398 -1.8317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001624565489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -58.016044 kcal Electronic energy + Delta-G solvation = -28813.153049 eV Core-core repulsion = 24312.468493 eV Total energy + Delta-G solvation = -4500.684556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.40192 -42.34816 -41.58096 -40.55320 -37.71693 -37.50907 -36.99676 -35.56431 -33.87386 -32.78505 -32.32088 -31.28235 -28.76731 -27.37902 -26.96935 -26.01027 -24.41857 -22.62315 -22.36124 -21.71790 -21.04070 -19.98347 -19.46897 -19.08570 -18.60193 -18.49298 -17.92810 -17.69837 -17.58327 -17.23637 -16.79734 -16.33195 -16.10941 -15.84345 -15.59891 -14.99429 -14.75038 -14.47785 -14.26743 -14.19387 -13.80344 -13.62977 -13.38347 -13.15230 -12.96618 -12.89194 -12.75575 -12.60131 -12.56718 -12.27297 -12.19159 -12.09492 -11.97333 -11.93293 -11.80626 -11.63156 -11.16404 -11.07657 -10.63387 -10.42253 -9.59223 -8.35793 -6.10423 -0.76621 0.24171 0.43673 1.11901 1.19890 1.27173 1.37544 1.48315 1.58684 1.63641 1.93219 2.29279 2.79116 2.99874 3.14662 3.39580 3.59016 3.79730 3.82933 3.98490 4.05984 4.08415 4.19357 4.28757 4.30438 4.31539 4.46137 4.58009 4.68338 4.69031 4.78512 4.90929 4.99334 5.26324 5.27968 5.37220 5.43397 5.52174 5.91035 6.01925 6.32284 6.64762 6.68485 7.05499 7.46766 7.89388 8.66313 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.002625 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.316961 B =10665.441032 C =12122.609766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.539 6.539 5 C -0.112 4.112 6 C 0.126 3.874 7 N -0.444 5.444 8 C -0.358 4.358 9 H 0.109 0.891 10 C 0.007 3.993 11 N -0.888 5.888 12 Si 0.976 3.024 13 H -0.251 1.251 14 H -0.284 1.284 15 H -0.282 1.282 16 C 0.467 3.533 17 O -0.626 6.626 18 C -0.118 4.118 19 C 0.151 3.849 20 N -0.339 5.339 21 C 0.175 3.825 22 C -0.216 4.216 23 N 0.077 4.923 24 O -0.192 6.192 25 O -0.188 6.188 26 C 0.116 3.884 27 N -0.292 5.292 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.272 0.728 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.139 0.861 40 H 0.240 0.760 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -8.799 -4.649 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.151 4.151 6 C 0.001 3.999 7 N -0.161 5.161 8 C -0.485 4.485 9 H 0.126 0.874 10 C -0.197 4.197 11 N -0.525 5.525 12 Si 0.800 3.200 13 H -0.174 1.174 14 H -0.210 1.210 15 H -0.207 1.207 16 C 0.257 3.743 17 O -0.515 6.515 18 C -0.159 4.159 19 C 0.031 3.969 20 N -0.116 5.116 21 C 0.020 3.980 22 C -0.314 4.314 23 N 0.588 4.412 24 O -0.401 6.401 25 O -0.398 6.398 26 C -0.073 4.073 27 N -0.111 5.111 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.157 0.843 40 H 0.256 0.744 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.554 -7.188 -4.187 8.462 hybrid contribution 0.542 -0.235 0.516 0.784 sum 2.096 -7.423 -3.671 8.542 Atomic orbital electron populations 1.23578 0.74821 1.05871 1.02402 1.86506 1.25097 1.32366 1.83849 1.23893 0.92256 0.81254 0.71052 1.90652 1.67914 1.37553 1.46721 1.21642 0.86615 1.00467 1.06356 1.21007 0.82272 0.93415 1.03174 1.43586 1.04641 1.62494 1.05386 1.19785 1.05844 1.35806 0.87111 0.87377 1.26156 0.96268 0.93532 1.03748 1.69973 1.30663 1.18682 1.33168 0.85138 0.78456 0.78716 0.77728 1.17427 1.20990 1.20736 1.20664 0.90186 0.79936 0.83544 1.90556 1.71268 1.57308 1.32337 1.21430 0.92193 1.05546 0.96710 1.21897 0.69623 1.07301 0.98044 1.49114 1.08055 1.19115 1.35299 1.22960 0.88356 0.94072 0.92661 1.21149 0.86029 1.05161 1.19093 1.42610 1.01609 0.99291 0.97725 1.94533 1.10583 1.71876 1.63080 1.94523 1.93154 1.16427 1.35718 1.24398 0.97125 0.92406 0.93418 1.77861 0.99827 1.14577 1.18861 0.92266 0.92090 0.84390 0.87206 0.86431 0.88825 0.94099 0.91777 0.88022 0.89060 0.88333 0.84310 0.74370 0.75470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.46 10.57 -51.41 -0.54 -11.01 16 3 C 0.47 16.85 7.96 71.23 0.57 17.42 16 4 O -0.54 -22.77 15.73 21.96 0.35 -22.43 16 5 C -0.11 -4.03 6.13 29.85 0.18 -3.85 16 6 C 0.13 5.69 4.34 86.38 0.37 6.06 16 7 N -0.44 -19.64 2.54 -635.55 -1.61 -21.25 16 8 C -0.36 -15.88 8.73 84.04 0.73 -15.15 16 9 H 0.11 4.40 6.95 -2.91 -0.02 4.38 16 10 C 0.01 0.33 4.95 84.93 0.42 0.75 16 11 N -0.89 -45.33 11.34 21.66 0.25 -45.09 16 12 Si 0.98 36.55 29.61 68.60 2.03 38.59 16 13 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 14 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 16 C 0.47 18.82 7.62 87.66 0.67 19.49 16 17 O -0.63 -27.52 15.54 -3.08 -0.05 -27.57 16 18 C -0.12 -3.63 4.51 29.85 0.13 -3.49 16 19 C 0.15 3.50 5.80 86.38 0.50 4.01 16 20 N -0.34 -7.34 3.68 -348.05 -1.28 -8.62 16 21 C 0.18 3.09 11.13 83.54 0.93 4.02 16 22 C -0.22 -4.63 7.11 36.10 0.26 -4.37 16 23 N 0.08 1.93 4.45 -47.12 -0.21 1.72 16 24 O -0.19 -5.19 19.05 18.89 0.36 -4.83 16 25 O -0.19 -4.88 19.02 18.88 0.36 -4.52 16 26 C 0.12 2.44 11.75 85.24 1.00 3.44 16 27 N -0.29 -7.27 12.42 -57.02 -0.71 -7.98 16 28 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 30 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 32 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 33 H 0.09 4.79 5.32 -2.39 -0.01 4.77 16 34 H 0.04 2.02 7.32 -2.39 -0.02 2.01 16 35 H 0.27 13.28 8.32 -92.71 -0.77 12.51 16 36 H 0.10 2.83 7.68 -2.39 -0.02 2.81 16 37 H 0.09 3.12 8.09 -2.39 -0.02 3.10 16 38 H 0.10 2.51 8.08 -2.39 -0.02 2.49 16 39 H 0.14 2.51 8.05 -2.38 -0.02 2.50 16 40 H 0.24 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.23 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -65.92 372.46 6.98 -58.94 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.08 Total: 23.99 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 6.97 Total: 30.07 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -3.57 Total: -81.23 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: 0.47 Total: -70.35 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.59 kcal Total: -65.92 6.98 -58.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624565489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.920 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds