Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34729 * 116.99701 * 2 1 4 4 O 1.21477 * 120.00340 * 0.02562 * 3 2 1 5 5 C 1.47698 * 120.00217 * 180.02562 * 3 2 1 6 6 N 1.32894 * 119.79201 * 5.95167 * 5 3 2 7 7 C 1.31358 * 121.70123 * 180.29147 * 6 5 3 8 8 C 1.38809 * 121.10846 * 359.68245 * 7 6 5 9 9 C 1.38258 * 119.46893 * 0.02562 * 8 7 6 10 10 C 1.39494 * 118.42926 * 0.02562 * 9 8 7 11 11 N 1.39230 * 120.55932 * 179.97438 * 10 9 8 12 12 C 1.34778 * 119.99887 * 30.95364 * 11 10 9 13 13 O 1.21267 * 120.00103 * 354.67509 * 12 11 10 14 14 C 1.50704 * 119.99691 * 174.39478 * 12 11 10 15 15 C 1.50705 * 109.46749 * 180.27661 * 14 12 11 16 16 C 1.37634 * 120.12642 * 264.99963 * 15 14 12 17 17 C 1.38620 * 120.24843 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.49925 * 0.02562 * 17 16 15 19 19 C 1.37591 * 120.24950 * 0.02562 * 18 17 16 20 20 C 1.40695 * 120.12756 * 84.72856 * 15 14 12 21 21 C 1.41397 * 120.24425 * 359.97438 * 20 15 14 22 22 H 1.08001 * 119.99773 * 326.12631 * 21 20 15 23 23 C 1.39944 * 120.00013 * 146.13313 * 21 20 15 24 24 N 1.30821 * 120.00141 * 357.26353 * 23 21 20 25 25 Si 1.86796 * 120.00045 * 177.27140 * 23 21 20 26 26 H 1.48504 * 109.47438 * 59.99318 * 25 23 21 27 27 H 1.48504 * 109.47145 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47289 * 299.99403 * 25 23 21 29 29 H 1.08995 * 109.47547 * 59.99870 * 1 2 3 30 30 H 1.09008 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47085 * 299.99368 * 1 2 3 32 32 H 1.08000 * 119.44395 * 179.70417 * 7 6 5 33 33 H 1.08007 * 120.26666 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.78823 * 180.02562 * 9 8 7 35 35 H 0.97010 * 120.00430 * 210.95190 * 11 10 9 36 36 H 1.08996 * 109.47480 * 300.27299 * 14 12 11 37 37 H 1.09000 * 109.47360 * 60.27912 * 14 12 11 38 38 H 1.08002 * 119.87850 * 0.02562 * 16 15 14 39 39 H 1.08002 * 119.74716 * 180.02562 * 17 16 15 40 40 H 1.07999 * 119.87157 * 179.97438 * 18 17 16 41 41 H 1.08001 * 120.12868 * 179.97438 * 19 18 17 42 42 H 0.97002 * 120.00399 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5385 1.2779 -0.0006 6 7 4.2580 0.1670 -0.1207 7 6 5.5713 0.1918 -0.1201 8 6 6.2660 1.3875 0.0003 9 6 5.5643 2.5725 0.1221 10 6 4.1703 2.5221 0.1201 11 7 3.4196 3.6884 0.2407 12 6 3.8979 4.8510 -0.2453 13 8 5.0207 4.9017 -0.7005 14 6 3.0349 6.0864 -0.2289 15 6 3.7968 7.2392 -0.8302 16 6 4.4864 8.1103 -0.0178 17 6 5.1885 9.1713 -0.5682 18 6 5.2044 9.3681 -1.9406 19 6 4.5213 8.5105 -2.7719 20 6 3.8106 7.4259 -2.2247 21 6 3.1110 6.5338 -3.0696 22 1 3.0362 5.4887 -2.8078 23 6 2.5157 7.0050 -4.2452 24 7 2.5603 8.2798 -4.5355 25 14 1.6571 5.8138 -5.3998 26 1 0.5463 5.1404 -4.6800 27 1 1.1128 6.5581 -6.5639 28 1 2.6291 4.7958 -5.8732 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 6.1198 -0.7337 -0.2152 33 1 7.3461 1.3921 -0.0013 34 1 6.0832 3.5150 0.2166 35 1 2.5522 3.6644 0.6745 36 1 2.1308 5.9058 -0.8102 37 1 2.7640 6.3267 0.7991 38 1 4.4812 7.9662 1.0526 39 1 5.7271 9.8496 0.0768 40 1 5.7544 10.1983 -2.3586 41 1 4.5347 8.6659 -3.8406 42 1 2.1474 8.6066 -5.3501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645719899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -53.290811 kcal Electronic energy + Delta-G solvation = -28986.144739 eV Core-core repulsion = 24896.514348 eV Total energy + Delta-G solvation = -4089.630391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29870 -39.95423 -39.08223 -37.45626 -36.68379 -34.74850 -33.57096 -32.58405 -31.89851 -30.33574 -29.45139 -28.01805 -26.87217 -25.08468 -24.83003 -23.55139 -21.58412 -20.94028 -20.71863 -19.47633 -18.33482 -17.85947 -17.27334 -17.09742 -16.80448 -16.51050 -15.75936 -15.46438 -15.28308 -14.77620 -14.50919 -14.14625 -14.04819 -13.66032 -13.41449 -13.36615 -13.19534 -13.12102 -12.75857 -12.57261 -12.20573 -11.81944 -11.57383 -11.36552 -11.11416 -11.02562 -10.94969 -10.93751 -10.70875 -10.68167 -10.38468 -10.04440 -9.83618 -9.53966 -9.45096 -9.20318 -9.16525 -8.35192 -7.36359 -7.22531 -6.64584 -4.39318 0.37558 1.12440 2.28033 2.44027 2.72956 2.89830 3.01235 3.07650 3.12189 3.24765 3.32772 3.72380 3.97366 4.06339 4.63991 4.67128 4.70546 4.93299 4.94448 4.98836 5.04083 5.21297 5.36937 5.42024 5.69205 5.83690 5.91739 5.99832 6.03644 6.10294 6.22676 6.25203 6.39580 6.46808 6.68633 6.75535 7.11632 7.26011 7.37080 7.39690 7.54791 7.65854 7.75340 7.86875 8.06482 8.08633 8.30248 8.45124 8.64730 8.92550 8.98738 10.28561 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.004008 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.362609 B = 6984.344443 C = 8357.864215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.334 6.334 3 C 0.530 3.470 4 O -0.501 6.501 5 C 0.032 3.968 6 N -0.416 5.416 7 C 0.066 3.934 8 C -0.114 4.114 9 C -0.101 4.101 10 C 0.191 3.809 11 N -0.668 5.668 12 C 0.517 3.483 13 O -0.498 6.498 14 C -0.068 4.068 15 C -0.178 4.178 16 C -0.085 4.085 17 C -0.230 4.230 18 C -0.111 4.111 19 C -0.147 4.147 20 C 0.128 3.872 21 C -0.460 4.460 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.808 5.808 25 Si 0.905 3.095 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.266 1.266 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.422 0.578 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.296 -14.059 9.278 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.249 6.249 3 C 0.374 3.626 4 O -0.389 6.389 5 C -0.106 4.106 6 N -0.126 5.126 7 C -0.098 4.098 8 C -0.134 4.134 9 C -0.129 4.129 10 C 0.088 3.912 11 N -0.317 5.317 12 C 0.307 3.693 13 O -0.370 6.370 14 C -0.108 4.108 15 C -0.180 4.180 16 C -0.104 4.104 17 C -0.250 4.250 18 C -0.129 4.129 19 C -0.166 4.166 20 C 0.126 3.874 21 C -0.491 4.491 22 H 0.089 0.911 23 C -0.141 4.141 24 N -0.435 5.435 25 Si 0.730 3.270 26 H -0.190 1.190 27 H -0.203 1.203 28 H -0.191 1.191 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.186 0.814 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.398 -14.214 8.658 16.647 hybrid contribution -0.596 0.285 -0.415 0.780 sum -0.994 -13.928 8.243 16.215 Atomic orbital electron populations 1.23355 0.76087 1.03858 1.02816 1.86674 1.23180 1.31562 1.83478 1.20679 0.87637 0.81792 0.72485 1.90747 1.65881 1.35788 1.46494 1.19650 0.90743 0.89332 1.10849 1.67544 1.08587 1.28484 1.08025 1.22730 0.89150 0.98400 0.99539 1.22435 1.02085 0.92602 0.96288 1.22073 0.91637 1.01006 0.98196 1.18716 0.92105 0.86327 0.94015 1.44221 1.23214 1.06041 1.58241 1.21735 0.88297 0.83969 0.75306 1.90632 1.19476 1.84387 1.42493 1.20289 0.98789 0.90057 1.01616 1.19118 1.06771 0.98291 0.93793 1.20316 0.97740 0.95626 0.96697 1.20362 1.08265 1.01586 0.94753 1.20738 0.99834 0.98652 0.93699 1.21425 0.98354 0.97273 0.99554 1.17358 0.88432 0.91657 0.89934 1.19398 1.29737 0.95915 1.04035 0.91124 1.25812 0.95390 0.95379 0.97473 1.69751 1.36125 1.13845 1.23754 0.86407 0.80092 0.80906 0.79576 1.19048 1.20262 1.19077 0.91574 0.87910 0.91703 0.81789 0.83644 0.81407 0.73578 0.87656 0.89938 0.89607 0.89516 0.89436 0.86064 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.33 -4.37 10.39 -40.57 -0.42 -4.79 16 3 C 0.53 7.87 7.92 34.60 0.27 8.15 16 4 O -0.50 -7.93 13.67 -19.25 -0.26 -8.20 16 5 C 0.03 0.48 6.76 -82.86 -0.56 -0.08 16 6 N -0.42 -5.76 10.12 -9.69 -0.10 -5.85 16 7 C 0.07 0.71 11.17 -17.54 -0.20 0.52 16 8 C -0.11 -1.24 10.10 -39.36 -0.40 -1.64 16 9 C -0.10 -1.45 8.84 -39.11 -0.35 -1.79 16 10 C 0.19 2.98 6.39 -83.35 -0.53 2.45 16 11 N -0.67 -10.85 4.68 -9.60 -0.04 -10.89 16 12 C 0.52 9.93 7.29 -10.98 -0.08 9.85 16 13 O -0.50 -10.98 13.24 5.57 0.07 -10.91 16 14 C -0.07 -1.32 5.21 -29.03 -0.15 -1.47 16 15 C -0.18 -4.18 4.43 -103.91 -0.46 -4.64 16 16 C -0.09 -1.90 9.66 -39.66 -0.38 -2.29 16 17 C -0.23 -5.20 10.05 -39.29 -0.39 -5.59 16 18 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 19 C -0.15 -3.87 8.64 -38.87 -0.34 -4.21 16 20 C 0.13 3.40 5.53 -106.82 -0.59 2.81 16 21 C -0.46 -12.23 7.95 -37.74 -0.30 -12.53 16 22 H 0.07 1.87 6.93 -52.49 -0.36 1.51 16 23 C 0.08 1.92 5.36 -17.34 -0.09 1.83 16 24 N -0.81 -21.10 10.79 55.55 0.60 -20.50 16 25 Si 0.91 19.55 29.56 -169.99 -5.02 14.53 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.17 2.61 5.99 -52.49 -0.31 2.30 16 35 H 0.42 6.20 6.32 -40.82 -0.26 5.94 16 36 H 0.11 2.10 7.21 -51.93 -0.37 1.72 16 37 H 0.08 1.31 8.05 -51.93 -0.42 0.90 16 38 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.12 3.32 6.31 -52.49 -0.33 2.99 16 42 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -31.70 363.48 -8.16 -39.85 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.58 Total: 11.60 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.88 Total: -10.32 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.46 Total: -37.25 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.61 Total: -23.90 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.70 -8.16 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645719899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.437 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds