Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34729 * 116.99701 * 2 1 4 4 O 1.21477 * 120.00340 * 0.02562 * 3 2 1 5 5 C 1.47698 * 120.00217 * 180.02562 * 3 2 1 6 6 N 1.32894 * 119.79201 * 5.95167 * 5 3 2 7 7 C 1.31358 * 121.70123 * 180.29147 * 6 5 3 8 8 C 1.38809 * 121.10846 * 359.68245 * 7 6 5 9 9 C 1.38258 * 119.46893 * 0.02562 * 8 7 6 10 10 C 1.39494 * 118.42926 * 0.02562 * 9 8 7 11 11 N 1.39230 * 120.55932 * 179.97438 * 10 9 8 12 12 C 1.34778 * 119.99887 * 30.95364 * 11 10 9 13 13 O 1.21267 * 120.00103 * 354.67509 * 12 11 10 14 14 C 1.50704 * 119.99691 * 174.39478 * 12 11 10 15 15 C 1.50705 * 109.46749 * 180.27661 * 14 12 11 16 16 C 1.37634 * 120.12642 * 264.99963 * 15 14 12 17 17 C 1.38620 * 120.24843 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.49925 * 0.02562 * 17 16 15 19 19 C 1.37591 * 120.24950 * 0.02562 * 18 17 16 20 20 C 1.40695 * 120.12756 * 84.72856 * 15 14 12 21 21 C 1.41397 * 120.24425 * 359.97438 * 20 15 14 22 22 H 1.08001 * 119.99773 * 326.12631 * 21 20 15 23 23 C 1.39944 * 120.00013 * 146.13313 * 21 20 15 24 24 N 1.30821 * 120.00141 * 357.26353 * 23 21 20 25 25 Si 1.86796 * 120.00045 * 177.27140 * 23 21 20 26 26 H 1.48504 * 109.47438 * 59.99318 * 25 23 21 27 27 H 1.48504 * 109.47145 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47289 * 299.99403 * 25 23 21 29 29 H 1.08995 * 109.47547 * 59.99870 * 1 2 3 30 30 H 1.09008 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47085 * 299.99368 * 1 2 3 32 32 H 1.08000 * 119.44395 * 179.70417 * 7 6 5 33 33 H 1.08007 * 120.26666 * 180.02562 * 8 7 6 34 34 H 1.07998 * 120.78823 * 180.02562 * 9 8 7 35 35 H 0.97010 * 120.00430 * 210.95190 * 11 10 9 36 36 H 1.08996 * 109.47480 * 300.27299 * 14 12 11 37 37 H 1.09000 * 109.47360 * 60.27912 * 14 12 11 38 38 H 1.08002 * 119.87850 * 0.02562 * 16 15 14 39 39 H 1.08002 * 119.74716 * 180.02562 * 17 16 15 40 40 H 1.07999 * 119.87157 * 179.97438 * 18 17 16 41 41 H 1.08001 * 120.12868 * 179.97438 * 19 18 17 42 42 H 0.97002 * 120.00399 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5385 1.2779 -0.0006 6 7 4.2580 0.1670 -0.1207 7 6 5.5713 0.1918 -0.1201 8 6 6.2660 1.3875 0.0003 9 6 5.5643 2.5725 0.1221 10 6 4.1703 2.5221 0.1201 11 7 3.4196 3.6884 0.2407 12 6 3.8979 4.8510 -0.2453 13 8 5.0207 4.9017 -0.7005 14 6 3.0349 6.0864 -0.2289 15 6 3.7968 7.2392 -0.8302 16 6 4.4864 8.1103 -0.0178 17 6 5.1885 9.1713 -0.5682 18 6 5.2044 9.3681 -1.9406 19 6 4.5213 8.5105 -2.7719 20 6 3.8106 7.4259 -2.2247 21 6 3.1110 6.5338 -3.0696 22 1 3.0362 5.4887 -2.8078 23 6 2.5157 7.0050 -4.2452 24 7 2.5603 8.2798 -4.5355 25 14 1.6571 5.8138 -5.3998 26 1 0.5463 5.1404 -4.6800 27 1 1.1128 6.5581 -6.5639 28 1 2.6291 4.7958 -5.8732 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 6.1198 -0.7337 -0.2152 33 1 7.3461 1.3921 -0.0013 34 1 6.0832 3.5150 0.2166 35 1 2.5522 3.6644 0.6745 36 1 2.1308 5.9058 -0.8102 37 1 2.7640 6.3267 0.7991 38 1 4.4812 7.9662 1.0526 39 1 5.7271 9.8496 0.0768 40 1 5.7544 10.1983 -2.3586 41 1 4.5347 8.6659 -3.8406 42 1 2.1474 8.6066 -5.3501 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645719899.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -71.789303 kcal Electronic energy + Delta-G solvation = -28986.946893 eV Core-core repulsion = 24896.514348 eV Total energy + Delta-G solvation = -4090.432546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43117 -41.15692 -40.33830 -39.18946 -37.76449 -36.05325 -35.47203 -33.80013 -33.34507 -31.59203 -31.30518 -28.97735 -28.40015 -26.92780 -25.84447 -24.73762 -22.81029 -22.63429 -22.22552 -21.08295 -19.38357 -19.19580 -18.90174 -18.31047 -18.11875 -17.54982 -17.28569 -16.90769 -16.35978 -16.19759 -16.15796 -15.51193 -15.35797 -15.10427 -14.93756 -14.67974 -14.39291 -14.27807 -14.15711 -13.73479 -13.58674 -13.40625 -13.01580 -12.92111 -12.84101 -12.81747 -12.51340 -12.22235 -12.13851 -11.87229 -11.84816 -11.36868 -11.31271 -11.29102 -11.07158 -10.84949 -10.46149 -9.52900 -9.20986 -9.12701 -8.54105 -6.37147 -0.68307 0.07828 0.94552 1.10660 1.21779 1.30661 1.40422 1.46482 1.47434 1.54706 2.00134 2.17436 2.69248 2.79575 3.10969 3.58178 3.60857 3.74436 3.91894 4.02489 4.12154 4.25963 4.31985 4.35096 4.36819 4.41103 4.56870 4.68402 4.70035 4.74740 4.85418 5.02345 5.06179 5.08227 5.18531 5.18857 5.36334 5.52066 5.58352 5.76289 6.00483 6.14487 6.18572 6.27123 6.37805 6.41005 6.72228 6.73419 6.98212 7.04573 7.07933 8.40622 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.004008 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.362609 B = 6984.344443 C = 8357.864215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.526 3.474 4 O -0.521 6.521 5 C 0.020 3.980 6 N -0.431 5.431 7 C 0.077 3.923 8 C -0.095 4.095 9 C -0.118 4.118 10 C 0.164 3.836 11 N -0.658 5.658 12 C 0.522 3.478 13 O -0.534 6.534 14 C -0.068 4.068 15 C -0.180 4.180 16 C -0.093 4.093 17 C -0.227 4.227 18 C -0.120 4.120 19 C -0.179 4.179 20 C 0.095 3.905 21 C -0.486 4.486 22 H 0.060 0.940 23 C 0.036 3.964 24 N -0.837 5.837 25 Si 0.966 3.034 26 H -0.262 1.262 27 H -0.263 1.263 28 H -0.270 1.270 29 H 0.060 0.940 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.210 0.790 33 H 0.186 0.814 34 H 0.153 0.847 35 H 0.427 0.573 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -16.001 10.654 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C 0.371 3.629 4 O -0.410 6.410 5 C -0.117 4.117 6 N -0.142 5.142 7 C -0.086 4.086 8 C -0.115 4.115 9 C -0.146 4.146 10 C 0.062 3.938 11 N -0.308 5.308 12 C 0.312 3.688 13 O -0.410 6.410 14 C -0.107 4.107 15 C -0.182 4.182 16 C -0.111 4.111 17 C -0.246 4.246 18 C -0.138 4.138 19 C -0.199 4.199 20 C 0.093 3.907 21 C -0.517 4.517 22 H 0.078 0.922 23 C -0.177 4.177 24 N -0.465 5.465 25 Si 0.788 3.212 26 H -0.186 1.186 27 H -0.187 1.187 28 H -0.195 1.195 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.203 0.797 34 H 0.170 0.830 35 H 0.271 0.729 36 H 0.114 0.886 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.075 -16.186 10.058 19.057 hybrid contribution -0.639 0.798 -0.708 1.243 sum -0.564 -15.388 9.350 18.015 Atomic orbital electron populations 1.23688 0.74047 1.06117 1.02912 1.86658 1.25213 1.30582 1.82964 1.20798 0.87832 0.82070 0.72154 1.90720 1.66314 1.36418 1.47577 1.19703 0.91110 0.89442 1.11410 1.67626 1.10005 1.27869 1.08708 1.23536 0.88327 1.00072 0.96688 1.22870 1.03950 0.91173 0.93514 1.22111 0.91355 1.01858 0.99297 1.18921 0.92776 0.86148 0.95913 1.43915 1.23364 1.05665 1.57814 1.21490 0.87641 0.84621 0.75029 1.90616 1.20861 1.85081 1.44414 1.20291 0.97819 0.89293 1.03341 1.19527 1.06245 0.99324 0.93067 1.20764 0.96813 0.94950 0.98528 1.20804 1.07495 1.01819 0.94504 1.21012 0.99534 0.98773 0.94477 1.21399 1.00446 0.99000 0.99007 1.17700 0.89182 0.92171 0.91613 1.19469 1.31238 0.95510 1.05475 0.92222 1.26517 0.95802 0.96849 0.98526 1.69825 1.37091 1.15141 1.24433 0.85492 0.78906 0.78779 0.78009 1.18628 1.18689 1.19539 0.92120 0.84588 0.91013 0.77372 0.79711 0.82989 0.72950 0.88613 0.86127 0.86027 0.86194 0.87422 0.88285 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.34 -8.58 10.39 -56.39 -0.59 -9.17 16 3 C 0.53 15.57 7.92 70.32 0.56 16.13 16 4 O -0.52 -16.66 13.67 19.91 0.27 -16.38 16 5 C 0.02 0.58 6.76 41.93 0.28 0.87 16 6 N -0.43 -11.13 10.12 -184.57 -1.87 -13.00 16 7 C 0.08 1.43 11.17 84.90 0.95 2.38 16 8 C -0.10 -1.81 10.10 22.41 0.23 -1.58 16 9 C -0.12 -3.31 8.84 22.58 0.20 -3.11 16 10 C 0.16 5.12 6.39 38.71 0.25 5.36 16 11 N -0.66 -21.66 4.68 -302.67 -1.42 -23.08 16 12 C 0.52 20.36 7.29 87.66 0.64 21.00 16 13 O -0.53 -24.18 13.24 -2.99 -0.04 -24.22 16 14 C -0.07 -2.66 5.21 29.10 0.15 -2.50 16 15 C -0.18 -8.50 4.43 -19.41 -0.09 -8.59 16 16 C -0.09 -3.98 9.66 22.22 0.21 -3.77 16 17 C -0.23 -9.88 10.05 22.46 0.23 -9.65 16 18 C -0.12 -5.73 10.02 22.22 0.22 -5.51 16 19 C -0.18 -9.81 8.64 22.73 0.20 -9.61 16 20 C 0.10 5.22 5.53 -21.29 -0.12 5.10 16 21 C -0.49 -26.97 7.95 23.46 0.19 -26.79 16 22 H 0.06 3.32 6.93 -2.91 -0.02 3.30 16 23 C 0.04 1.88 5.36 85.26 0.46 2.34 16 24 N -0.84 -45.41 10.79 21.83 0.24 -45.18 16 25 Si 0.97 41.18 29.56 68.60 2.03 43.21 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.14 1.36 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 32 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.15 4.78 5.99 -2.91 -0.02 4.76 16 35 H 0.43 12.73 6.32 -92.70 -0.59 12.14 16 36 H 0.10 3.92 7.21 -2.39 -0.02 3.91 16 37 H 0.12 3.66 8.05 -2.39 -0.02 3.64 16 38 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.10 5.74 6.31 -2.91 -0.02 5.73 16 42 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 Total: -1.00 -72.41 363.48 4.87 -67.54 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.50 Total: 36.59 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 5.75 Total: -16.31 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -3.05 Total: -81.26 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.35 Total: -49.77 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -72.41 4.87 -67.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645719899.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.248 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds