Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86790 * 119.99825 * 2 1 4 4 H 1.48502 * 109.46912 * 239.99357 * 3 2 1 5 5 H 1.48501 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47161 * 119.99730 * 3 2 1 7 7 C 1.38802 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99806 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99794 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00133 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99982 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99855 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.92002 * 31.10160 * 14 13 11 16 16 C 1.54909 * 111.00625 * 267.19832 * 14 13 11 17 17 N 1.47431 * 104.83077 * 204.91944 * 16 14 13 18 18 C 1.34782 * 125.64540 * 204.09394 * 17 16 14 19 19 O 1.21282 * 119.99919 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99696 * 180.02562 * 18 17 16 21 21 H 1.08994 * 115.55029 * 34.32650 * 20 18 17 22 22 C 1.53004 * 117.49812 * 248.61650 * 20 18 17 23 23 C 1.52990 * 60.00136 * 252.51309 * 22 20 18 24 24 C 1.53000 * 138.58761 * 130.88794 * 23 22 20 25 25 C 1.52991 * 138.59172 * 229.10459 * 23 22 20 26 26 C 1.47016 * 108.70548 * 24.12483 * 17 16 14 27 27 C 1.54322 * 107.27212 * 358.94359 * 26 17 16 28 28 H 1.08994 * 110.72020 * 219.26352 * 27 26 17 29 29 O 1.42905 * 110.71976 * 96.16556 * 27 26 17 30 30 H 0.97000 * 120.00193 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47761 * 59.99694 * 10 9 7 32 32 H 1.08998 * 109.47240 * 299.99816 * 10 9 7 33 33 H 0.96996 * 119.99815 * 0.02562 * 13 11 10 34 34 H 1.08997 * 110.36577 * 86.08267 * 16 14 13 35 35 H 1.09003 * 110.36973 * 323.75280 * 16 14 13 36 36 H 1.09006 * 117.49551 * 0.02562 * 22 20 18 37 37 H 1.08996 * 117.50164 * 145.02136 * 22 20 18 38 38 H 1.09002 * 117.49679 * 238.38616 * 24 23 22 39 39 H 1.08997 * 117.49967 * 23.41223 * 24 23 22 40 40 H 1.08997 * 117.49529 * 336.59875 * 25 23 22 41 41 H 1.09005 * 117.49418 * 121.58896 * 25 23 22 42 42 H 1.08998 * 109.88597 * 239.52646 * 26 17 16 43 43 H 1.09001 * 110.00733 * 118.42974 * 26 17 16 44 44 H 0.96699 * 113.99962 * 61.45814 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3432 0.0008 14 6 2.3304 -7.7150 0.0019 15 1 1.3770 -7.7740 -0.5229 16 6 2.2034 -8.2592 1.4467 17 7 2.2893 -9.7244 1.3071 18 6 1.7907 -10.6267 2.1753 19 8 1.2120 -10.2525 3.1733 20 6 1.9522 -12.1006 1.9059 21 1 2.8798 -12.3892 1.4116 22 6 0.6920 -12.8989 1.5660 23 6 1.3642 -13.0744 2.9291 24 6 0.9732 -13.0869 4.4082 25 6 1.8395 -14.2109 3.8363 26 6 3.0094 -10.0381 0.0644 27 6 3.3642 -8.6966 -0.6108 28 1 3.2417 -8.7647 -1.6917 29 8 4.6963 -8.3000 -0.2787 30 1 -0.4850 0.8400 -0.0004 31 1 3.1245 -3.7314 0.8905 32 1 3.1244 -3.7314 -0.8894 33 1 3.8009 -6.1835 0.0004 34 1 1.2428 -7.9747 1.8761 35 1 3.0210 -7.8886 2.0650 36 1 -0.2539 -12.3579 1.5369 37 1 0.7903 -13.7129 0.8479 38 1 1.4571 -12.3619 5.0628 39 1 -0.0620 -13.3243 4.6531 40 1 1.3741 -15.1877 3.7050 41 1 2.8934 -14.2257 4.1143 42 1 2.3722 -10.6277 -0.5946 43 1 3.9208 -10.5914 0.2911 44 1 5.3764 -8.9217 -0.5722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001683357233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -48.032117 kcal Electronic energy + Delta-G solvation = -26443.483299 eV Core-core repulsion = 22489.524894 eV Total energy + Delta-G solvation = -3953.958406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78554 -39.55733 -38.44928 -37.48585 -35.63366 -34.13675 -32.99321 -32.41421 -30.62956 -29.23034 -28.19425 -25.50670 -24.98634 -23.05189 -22.73574 -21.45963 -20.53435 -20.18728 -19.09020 -17.99983 -17.81115 -17.58156 -16.30248 -16.20443 -15.84652 -15.71053 -15.36127 -15.08864 -14.85503 -14.78507 -14.65304 -14.17637 -13.97998 -13.81641 -13.30738 -13.10226 -12.86993 -12.58429 -12.42180 -12.12455 -12.09612 -11.82483 -11.72497 -11.42232 -11.03401 -11.02592 -10.79815 -10.75209 -10.58509 -10.50433 -10.38393 -9.97792 -9.81634 -9.47263 -9.10393 -9.03949 -8.86513 -8.23257 -6.48880 -6.20191 -3.90896 2.19162 2.41083 3.00170 3.02352 3.24774 3.27281 3.30213 3.32670 3.37799 3.53572 3.77184 3.87224 3.98526 4.11239 4.21761 4.35693 4.44724 4.53033 4.68288 4.89015 4.92878 5.02512 5.04637 5.12199 5.14842 5.19458 5.25467 5.26084 5.29684 5.35609 5.51680 5.60072 5.61144 5.72575 5.82487 5.84006 5.89571 5.92320 6.15464 6.52447 7.11543 7.16938 7.60757 7.70726 7.91153 8.36468 8.56326 9.24933 10.87159 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023554 B = 0.001965 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.475218 B =14246.581429 C =14877.797231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.720 5.720 14 C 0.147 3.853 15 H 0.117 0.883 16 C 0.096 3.904 17 N -0.613 5.613 18 C 0.556 3.444 19 O -0.526 6.526 20 C -0.138 4.138 21 H 0.122 0.878 22 C -0.099 4.099 23 C -0.203 4.203 24 C -0.113 4.113 25 C -0.129 4.129 26 C 0.073 3.927 27 C 0.085 3.915 28 H 0.089 0.911 29 O -0.553 6.553 30 H 0.269 0.731 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.085 -29.951 -0.596 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.375 5.375 14 C 0.040 3.960 15 H 0.135 0.865 16 C -0.027 4.027 17 N -0.348 5.348 18 C 0.344 3.656 19 O -0.401 6.401 20 C -0.159 4.159 21 H 0.140 0.860 22 C -0.136 4.136 23 C -0.204 4.204 24 C -0.150 4.150 25 C -0.165 4.165 26 C -0.051 4.051 27 C 0.025 3.975 28 H 0.107 0.893 29 O -0.359 6.359 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.246 0.754 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.254 -29.494 0.263 30.374 hybrid contribution 2.908 0.855 -0.374 3.054 sum 10.162 -28.639 -0.111 30.389 Atomic orbital electron populations 1.70010 1.05944 1.27566 1.46769 1.24994 0.95034 0.99026 0.94537 0.86218 0.79224 0.81226 0.78793 1.19954 1.20823 1.19935 1.22829 0.94896 0.91645 1.59064 0.90936 1.85398 1.04817 0.96305 1.96735 1.23520 1.06643 0.95025 1.05111 1.20431 0.86498 0.86393 0.74730 1.90712 1.15351 1.85489 1.47428 1.45698 1.10743 1.03724 1.77361 1.22028 0.97073 0.81776 0.95156 0.86521 1.22705 1.03768 0.78639 0.97629 1.48210 1.56840 1.06757 1.23006 1.19366 0.77953 0.86152 0.82080 1.90740 1.41675 1.80690 1.26990 1.21910 1.00157 0.89386 1.04466 0.86013 1.22678 0.95067 1.00410 0.95447 1.21178 1.06381 1.02110 0.90698 1.22623 1.00473 0.99884 0.91988 1.22773 1.00383 0.93135 1.00254 1.22841 0.97547 0.98071 0.86661 1.23120 0.83583 0.92349 0.98479 0.89299 1.86452 1.14916 1.51483 1.83098 0.92130 0.89065 0.89067 0.75408 0.89374 0.90569 0.87882 0.87464 0.88120 0.88368 0.88245 0.88538 0.89987 0.90490 0.76687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.86 7.85 -10.98 -0.09 9.78 16 12 O -0.52 -11.54 15.50 5.56 0.09 -11.46 16 13 N -0.72 -9.65 5.17 -51.73 -0.27 -9.91 16 14 C 0.15 1.68 3.31 -65.78 -0.22 1.46 16 15 H 0.12 1.48 7.54 -51.93 -0.39 1.09 16 16 C 0.10 1.22 6.59 -2.53 -0.02 1.20 16 17 N -0.61 -6.40 3.33 -170.52 -0.57 -6.97 16 18 C 0.56 6.71 7.63 -10.98 -0.08 6.63 16 19 O -0.53 -8.59 16.50 5.56 0.09 -8.50 16 20 C -0.14 -1.16 5.54 -91.77 -0.51 -1.67 16 21 H 0.12 0.72 7.74 -51.93 -0.40 0.32 16 22 C -0.10 -0.72 10.23 -26.73 -0.27 -0.99 16 23 C -0.20 -1.75 5.05 -154.52 -0.78 -2.54 16 24 C -0.11 -0.99 10.16 -26.73 -0.27 -1.26 16 25 C -0.13 -0.85 10.53 -26.73 -0.28 -1.13 16 26 C 0.07 0.44 6.04 -3.07 -0.02 0.42 16 27 C 0.09 0.58 4.20 -24.89 -0.10 0.48 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 O -0.55 -3.56 12.15 -35.23 -0.43 -3.99 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 33 H 0.41 4.73 7.59 -40.82 -0.31 4.42 16 34 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.31 7.97 -51.93 -0.41 -0.10 16 44 H 0.38 0.72 9.09 45.56 0.41 1.13 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -38.12 389.25 -9.66 -47.77 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.71 Total: 3.60 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.22 Total: -3.51 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.10 Total: -42.45 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.25 Total: -23.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.12 -9.66 -47.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001683357233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.258 kcal (2) G-P(sol) polarization free energy of solvation -38.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds