Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48506 * 109.46923 * 269.99852 * 3 2 1 5 5 H 1.48498 * 109.47276 * 29.99569 * 3 2 1 6 6 H 1.48497 * 109.47017 * 149.99897 * 3 2 1 7 7 C 1.38806 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00708 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99947 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46930 * 304.99963 * 11 10 9 13 13 O 1.42905 * 109.47079 * 64.99736 * 11 10 9 14 14 C 1.52997 * 109.47143 * 184.99897 * 11 10 9 15 15 N 1.46500 * 109.47007 * 179.97438 * 14 11 10 16 16 C 1.34781 * 120.00080 * 180.02562 * 15 14 11 17 17 O 1.21280 * 119.99593 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.46902 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47573 * 180.02562 * 20 19 18 22 22 C 1.38249 * 119.98380 * 269.73193 * 21 20 19 23 23 C 1.38218 * 120.00963 * 179.72344 * 22 21 20 24 24 C 1.38348 * 119.98543 * 0.54741 * 23 22 21 25 25 Cl 1.73602 * 120.01290 * 179.70189 * 24 23 22 26 26 C 1.38354 * 119.97654 * 359.72515 * 24 23 22 27 27 C 1.38216 * 119.98256 * 359.97438 * 26 24 23 28 28 H 0.96999 * 120.00259 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00294 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47122 * 60.00266 * 10 9 7 31 31 H 1.09005 * 109.47144 * 299.99889 * 10 9 7 32 32 H 0.96702 * 113.99404 * 60.00301 * 13 11 10 33 33 H 1.08992 * 109.47303 * 299.99548 * 14 11 10 34 34 H 1.09002 * 109.47153 * 60.00035 * 14 11 10 35 35 H 0.96998 * 120.00098 * 359.97438 * 15 14 11 36 36 H 1.09004 * 109.46923 * 299.99345 * 18 16 15 37 37 H 1.09002 * 109.47316 * 59.99411 * 18 16 15 38 38 H 1.09001 * 109.47502 * 300.00166 * 19 18 16 39 39 H 1.09002 * 109.47153 * 59.99878 * 19 18 16 40 40 H 1.09001 * 109.47362 * 300.00732 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.08001 * 119.99234 * 359.97438 * 22 21 20 43 43 H 1.07997 * 120.00232 * 180.26558 * 23 22 21 44 44 H 1.08002 * 120.00618 * 179.97438 * 26 24 23 45 45 H 1.08001 * 119.98532 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0009 12 1 5.8658 -1.5461 -0.8415 13 8 5.9806 -1.5433 1.2214 14 6 6.3803 -3.5110 -0.1236 15 7 7.8206 -3.2432 -0.1245 16 6 8.6957 -4.2633 -0.2259 17 8 8.2906 -5.4029 -0.3160 18 6 10.1773 -3.9879 -0.2262 19 6 10.9413 -5.3076 -0.3508 20 6 12.4455 -5.0280 -0.3518 21 6 13.1981 -6.3278 -0.4752 22 6 13.5676 -7.0228 0.6614 23 6 14.2528 -8.2178 0.5487 24 6 14.5788 -8.7128 -0.7015 25 17 15.4462 -10.2098 -0.8436 26 6 14.2136 -8.0140 -1.8383 27 6 13.5229 -6.8222 -1.7245 28 1 -0.4850 0.8400 -0.0004 29 1 3.8645 -0.3621 -0.0004 30 1 3.8484 -3.0434 -0.8881 31 1 3.8491 -3.0415 0.8919 32 1 5.7867 -2.0612 2.0147 33 1 6.1309 -4.1561 0.7187 34 1 6.1025 -4.0053 -1.0546 35 1 8.1445 -2.3318 -0.0528 36 1 10.4267 -3.3424 -1.0684 37 1 10.4553 -3.4940 0.7049 38 1 10.6918 -5.9529 0.4915 39 1 10.6634 -5.8018 -1.2818 40 1 12.6947 -4.3829 -1.1943 41 1 12.7237 -4.5337 0.5790 42 1 13.3173 -6.6338 1.6373 43 1 14.5377 -8.7628 1.4365 44 1 14.4681 -8.3997 -2.8145 45 1 13.2382 -6.2764 -2.6119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732647430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -77.838846 kcal Electronic energy + Delta-G solvation = -25091.363512 eV Core-core repulsion = 21134.068884 eV Total energy + Delta-G solvation = -3957.294629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12412 -39.75108 -37.86294 -37.02923 -35.22155 -34.51498 -34.15210 -31.73520 -31.55267 -31.42648 -29.58546 -27.46548 -25.46677 -23.34150 -23.17741 -22.11292 -21.56117 -21.26881 -20.32395 -17.82546 -17.69127 -17.26917 -16.53037 -16.44636 -16.09936 -15.81988 -15.51335 -15.18933 -14.56188 -14.27124 -14.23532 -14.11511 -13.96219 -13.77875 -13.64597 -13.26054 -12.99408 -12.88002 -12.46074 -12.34378 -12.20820 -12.02681 -11.85522 -11.59279 -11.52262 -11.33742 -11.28929 -11.06844 -10.89763 -10.84904 -10.21651 -10.12384 -9.75887 -9.58019 -9.52895 -9.20223 -9.01440 -8.95618 -7.28932 -5.80204 -3.16743 0.64636 0.80561 1.68486 2.50068 2.97434 3.15850 3.36955 3.42365 3.44539 4.20082 4.23899 4.39989 4.42849 4.53146 4.57491 4.58457 4.67616 4.77002 4.83570 4.84400 5.06530 5.08675 5.12474 5.21969 5.25434 5.36325 5.43102 5.44406 5.48764 5.67642 5.68985 5.73833 5.74950 5.75097 5.83226 5.93707 6.08842 6.28233 6.31825 6.38779 6.51203 7.36018 7.72593 7.95233 8.08957 8.38144 9.17405 9.89320 10.08771 11.37811 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.001317 C = 0.001300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.465440 B =21258.960944 C =21531.124167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.249 4.249 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.089 3.911 15 N -0.724 5.724 16 C 0.508 3.492 17 O -0.544 6.544 18 C -0.141 4.141 19 C -0.098 4.098 20 C -0.084 4.084 21 C -0.073 4.073 22 C -0.104 4.104 23 C -0.108 4.108 24 C -0.041 4.041 25 Cl -0.075 7.075 26 C -0.108 4.108 27 C -0.104 4.104 28 H 0.260 0.740 29 H 0.365 0.635 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.376 0.624 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.405 0.595 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.826 -13.787 -0.648 37.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.025 3.975 12 H 0.122 0.878 13 O -0.362 6.362 14 C -0.035 4.035 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.421 6.421 18 C -0.181 4.181 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.073 4.073 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.067 4.067 25 Cl -0.046 7.046 26 C -0.127 4.127 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.199 0.801 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.223 0.777 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.239 0.761 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 34.541 -14.359 -1.135 37.424 hybrid contribution 0.454 1.000 0.350 1.153 sum 34.995 -13.359 -0.785 37.466 Atomic orbital electron populations 1.69705 1.05151 1.25940 1.57235 1.24667 0.95234 0.97303 1.01732 0.86538 0.79471 0.84758 0.77815 1.21100 1.21701 1.19889 1.19046 0.80511 0.94801 1.43548 0.89254 1.42571 1.03959 1.01949 1.91083 1.21181 0.88522 0.90295 0.99738 1.22454 0.94585 0.92309 0.88138 0.87795 1.86546 1.85908 1.48165 1.15603 1.22059 0.79846 0.98275 1.03353 1.45966 1.06595 1.10248 1.74786 1.20713 0.88773 0.85034 0.76007 1.90721 1.80425 1.21598 1.49345 1.21689 0.91633 1.00198 1.04573 1.21315 0.92039 0.96133 1.04133 1.20685 0.94367 0.93661 1.03377 1.20003 0.97326 0.96953 0.93052 1.21060 0.97981 0.94364 0.98846 1.21070 0.98986 0.96513 0.96125 1.20952 1.00633 0.89861 0.95265 1.98377 1.75288 1.32534 1.98374 1.21073 0.98774 0.95126 0.97720 1.21053 0.98061 0.95546 0.97587 0.92995 0.80126 0.94438 0.95061 0.77670 0.90959 0.90332 0.76051 0.88773 0.88732 0.90872 0.90876 0.90497 0.90487 0.84990 0.84950 0.84947 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.06 27.74 -169.99 -4.71 17.34 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.49 5.35 -59.91 -0.32 -17.81 16 10 C 0.13 2.35 5.90 -4.04 -0.02 2.33 16 11 C 0.08 1.15 3.09 -26.73 -0.08 1.07 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 O -0.56 -7.65 13.03 -35.23 -0.46 -8.11 16 14 C 0.09 1.05 5.34 -4.04 -0.02 1.03 16 15 N -0.72 -7.18 5.45 -60.30 -0.33 -7.50 16 16 C 0.51 5.39 7.83 -10.98 -0.09 5.31 16 17 O -0.54 -8.07 15.98 5.56 0.09 -7.99 16 18 C -0.14 -0.90 5.70 -27.88 -0.16 -1.05 16 19 C -0.10 -0.68 4.49 -26.73 -0.12 -0.80 16 20 C -0.08 -0.41 5.34 -27.89 -0.15 -0.55 16 21 C -0.07 -0.46 5.13 -104.62 -0.54 -0.99 16 22 C -0.10 -0.65 9.70 -39.58 -0.38 -1.03 16 23 C -0.11 -0.73 9.83 -39.55 -0.39 -1.12 16 24 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 25 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 26 C -0.11 -0.73 9.83 -39.55 -0.39 -1.12 16 27 C -0.10 -0.65 9.70 -39.59 -0.38 -1.04 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.37 8.47 5.53 -40.82 -0.23 8.24 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.38 4.22 9.05 45.56 0.41 4.63 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.28 8.35 -40.82 -0.34 2.93 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 41 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -35.14 396.26 -9.79 -44.93 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.08 Total: 9.31 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.23 Total: -5.61 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.13 Total: -53.80 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.37 Total: -16.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.14 -9.79 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732647430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.908 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds