Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99867 * 2 1 4 4 H 1.48506 * 109.46923 * 269.99852 * 3 2 1 5 5 H 1.48498 * 109.47276 * 29.99569 * 3 2 1 6 6 H 1.48497 * 109.47017 * 149.99897 * 3 2 1 7 7 C 1.38806 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00708 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99947 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46930 * 304.99963 * 11 10 9 13 13 O 1.42905 * 109.47079 * 64.99736 * 11 10 9 14 14 C 1.52997 * 109.47143 * 184.99897 * 11 10 9 15 15 N 1.46500 * 109.47007 * 179.97438 * 14 11 10 16 16 C 1.34781 * 120.00080 * 180.02562 * 15 14 11 17 17 O 1.21280 * 119.99593 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99975 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.46902 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47573 * 180.02562 * 20 19 18 22 22 C 1.38249 * 119.98380 * 269.73193 * 21 20 19 23 23 C 1.38218 * 120.00963 * 179.72344 * 22 21 20 24 24 C 1.38348 * 119.98543 * 0.54741 * 23 22 21 25 25 Cl 1.73602 * 120.01290 * 179.70189 * 24 23 22 26 26 C 1.38354 * 119.97654 * 359.72515 * 24 23 22 27 27 C 1.38216 * 119.98256 * 359.97438 * 26 24 23 28 28 H 0.96999 * 120.00259 * 0.02562 * 1 2 3 29 29 H 0.96993 * 120.00294 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47122 * 60.00266 * 10 9 7 31 31 H 1.09005 * 109.47144 * 299.99889 * 10 9 7 32 32 H 0.96702 * 113.99404 * 60.00301 * 13 11 10 33 33 H 1.08992 * 109.47303 * 299.99548 * 14 11 10 34 34 H 1.09002 * 109.47153 * 60.00035 * 14 11 10 35 35 H 0.96998 * 120.00098 * 359.97438 * 15 14 11 36 36 H 1.09004 * 109.46923 * 299.99345 * 18 16 15 37 37 H 1.09002 * 109.47316 * 59.99411 * 18 16 15 38 38 H 1.09001 * 109.47502 * 300.00166 * 19 18 16 39 39 H 1.09002 * 109.47153 * 59.99878 * 19 18 16 40 40 H 1.09001 * 109.47362 * 300.00732 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.08001 * 119.99234 * 359.97438 * 22 21 20 43 43 H 1.07997 * 120.00232 * 180.26558 * 23 22 21 44 44 H 1.08002 * 120.00618 * 179.97438 * 26 24 23 45 45 H 1.08001 * 119.98532 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0009 12 1 5.8658 -1.5461 -0.8415 13 8 5.9806 -1.5433 1.2214 14 6 6.3803 -3.5110 -0.1236 15 7 7.8206 -3.2432 -0.1245 16 6 8.6957 -4.2633 -0.2259 17 8 8.2906 -5.4029 -0.3160 18 6 10.1773 -3.9879 -0.2262 19 6 10.9413 -5.3076 -0.3508 20 6 12.4455 -5.0280 -0.3518 21 6 13.1981 -6.3278 -0.4752 22 6 13.5676 -7.0228 0.6614 23 6 14.2528 -8.2178 0.5487 24 6 14.5788 -8.7128 -0.7015 25 17 15.4462 -10.2098 -0.8436 26 6 14.2136 -8.0140 -1.8383 27 6 13.5229 -6.8222 -1.7245 28 1 -0.4850 0.8400 -0.0004 29 1 3.8645 -0.3621 -0.0004 30 1 3.8484 -3.0434 -0.8881 31 1 3.8491 -3.0415 0.8919 32 1 5.7867 -2.0612 2.0147 33 1 6.1309 -4.1561 0.7187 34 1 6.1025 -4.0053 -1.0546 35 1 8.1445 -2.3318 -0.0528 36 1 10.4267 -3.3424 -1.0684 37 1 10.4553 -3.4940 0.7049 38 1 10.6918 -5.9529 0.4915 39 1 10.6634 -5.8018 -1.2818 40 1 12.6947 -4.3829 -1.1943 41 1 12.7237 -4.5337 0.5790 42 1 13.3173 -6.6338 1.6373 43 1 14.5377 -8.7628 1.4365 44 1 14.4681 -8.3997 -2.8145 45 1 13.2382 -6.2764 -2.6119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732647430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -103.211875 kcal Electronic energy + Delta-G solvation = -25092.463769 eV Core-core repulsion = 21134.068884 eV Total energy + Delta-G solvation = -3958.394886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87324 -40.32341 -39.01461 -37.55775 -36.22554 -35.71391 -35.22571 -33.49711 -32.21456 -32.00199 -30.84190 -28.25411 -26.74394 -24.29542 -23.79404 -23.31289 -22.83688 -21.75651 -21.15723 -19.79039 -18.38955 -17.95174 -17.53409 -17.30635 -16.85237 -16.52686 -16.45166 -16.21856 -15.98170 -15.44836 -15.08594 -14.96105 -14.74792 -14.66474 -14.42365 -14.31806 -14.18143 -13.95283 -13.53510 -13.36793 -13.22356 -12.85802 -12.79801 -12.72437 -12.35442 -12.23619 -12.09823 -11.97230 -11.88498 -11.82618 -11.78943 -11.52244 -11.18438 -11.01760 -10.76704 -10.08972 -9.99179 -9.50079 -9.32659 -8.03989 -5.38241 0.16414 0.34391 1.16757 1.40217 1.42989 1.51404 1.70550 2.18738 2.48798 2.66310 3.26125 3.38460 3.52917 3.76886 3.82148 3.82938 3.97317 3.98679 4.09158 4.14784 4.22045 4.32064 4.41069 4.41397 4.58902 4.60226 4.72533 4.73453 4.80221 4.84737 4.91912 4.98844 5.01576 5.17581 5.21343 5.28226 5.29726 5.39087 5.48675 5.65093 5.72937 5.88672 6.19207 6.60037 6.75627 7.06960 7.31348 7.81811 8.01509 9.17288 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.001317 C = 0.001300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.465440 B =21258.960944 C =21531.124167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.241 4.241 8 H 0.055 0.945 9 N -0.752 5.752 10 C 0.123 3.877 11 C 0.107 3.893 12 H 0.111 0.889 13 O -0.562 6.562 14 C 0.099 3.901 15 N -0.714 5.714 16 C 0.504 3.496 17 O -0.593 6.593 18 C -0.131 4.131 19 C -0.094 4.094 20 C -0.075 4.075 21 C -0.081 4.081 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.056 4.056 25 Cl -0.081 7.081 26 C -0.119 4.119 27 C -0.111 4.111 28 H 0.259 0.741 29 H 0.369 0.631 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.387 0.613 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.417 0.583 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.630 -11.996 -0.467 39.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.174 1.174 7 C -0.372 4.372 8 H 0.073 0.927 9 N -0.398 5.398 10 C -0.004 4.004 11 C 0.047 3.953 12 H 0.129 0.871 13 O -0.369 6.369 14 C -0.026 4.026 15 N -0.367 5.367 16 C 0.292 3.708 17 O -0.473 6.473 18 C -0.171 4.171 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.081 4.081 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.083 4.083 25 Cl -0.052 7.052 26 C -0.138 4.138 27 C -0.129 4.129 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.254 0.746 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 37.408 -12.574 -0.943 39.477 hybrid contribution -0.456 0.311 0.306 0.631 sum 36.952 -12.264 -0.637 38.940 Atomic orbital electron populations 1.69892 1.07247 1.26820 1.59414 1.25535 0.96119 1.01448 1.02303 0.85356 0.78691 0.79252 0.78172 1.20287 1.22284 1.17446 1.19043 0.82775 0.93510 1.41845 0.92687 1.42538 1.02302 1.04030 1.90948 1.21415 0.91321 0.88131 0.99559 1.22131 0.91383 0.93190 0.88576 0.87131 1.86522 1.85644 1.48693 1.16037 1.21779 0.81068 0.96924 1.02855 1.45869 1.05578 1.10972 1.74260 1.21515 0.90504 0.84169 0.74580 1.90709 1.81443 1.23602 1.51593 1.21733 0.87929 1.00359 1.07058 1.21226 0.93619 0.96087 1.02254 1.20657 0.92349 0.93181 1.05015 1.20265 0.97239 0.97618 0.93001 1.21327 0.97641 0.94163 0.99781 1.21276 0.99203 0.96993 0.96300 1.21135 1.01289 0.89959 0.95900 1.98368 1.75485 1.32969 1.98405 1.21277 0.98986 0.95491 0.98024 1.21320 0.97745 0.95457 0.98410 0.93272 0.79696 0.94540 0.94949 0.76337 0.91397 0.91087 0.74566 0.86070 0.86077 0.92854 0.92875 0.88829 0.88810 0.83398 0.84106 0.84120 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.98 13.97 21.65 0.30 -62.68 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.96 45.08 27.74 68.60 1.90 46.98 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.25 -10.68 6.52 99.48 0.65 -10.04 16 7 C -0.24 -13.69 10.47 84.03 0.88 -12.81 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.75 -34.11 5.35 -343.44 -1.84 -35.95 16 10 C 0.12 4.27 5.90 86.38 0.51 4.78 16 11 C 0.11 2.65 3.09 30.59 0.09 2.74 16 12 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 13 O -0.56 -13.65 13.03 -148.98 -1.94 -15.59 16 14 C 0.10 2.15 5.34 86.38 0.46 2.61 16 15 N -0.71 -12.22 5.45 -463.06 -2.52 -14.74 16 16 C 0.50 9.63 7.83 87.66 0.69 10.32 16 17 O -0.59 -17.27 15.98 -3.03 -0.05 -17.32 16 18 C -0.13 -1.22 5.70 29.85 0.17 -1.05 16 19 C -0.09 -1.10 4.49 30.59 0.14 -0.97 16 20 C -0.07 -0.50 5.34 29.85 0.16 -0.34 16 21 C -0.08 -0.87 5.13 -19.86 -0.10 -0.98 16 22 C -0.11 -1.24 9.70 22.27 0.22 -1.02 16 23 C -0.12 -1.53 9.83 22.29 0.22 -1.32 16 24 C -0.06 -0.82 6.32 22.32 0.14 -0.68 16 25 Cl -0.08 -1.18 28.96 -2.72 -0.08 -1.26 16 26 C -0.12 -1.54 9.83 22.29 0.22 -1.32 16 27 C -0.11 -1.25 9.70 22.26 0.22 -1.03 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.37 16.12 5.53 -92.71 -0.51 15.61 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.39 7.58 9.05 -74.06 -0.67 6.91 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.42 5.17 8.35 -92.71 -0.77 4.40 16 36 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 39 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 40 H 0.09 0.36 8.08 -2.39 -0.02 0.34 16 41 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 42 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -77.59 396.26 -0.75 -78.33 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -1.00 Total: 26.50 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 4.47 Total: -4.27 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.06 Total: -113.37 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.99 Total: -32.91 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -77.59 -0.75 -78.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732647430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.878 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds