Wall clock time and date at job start Sat Apr 11 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47146 * 239.99968 * 3 2 1 5 5 H 1.48501 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47220 * 120.00272 * 3 2 1 7 7 C 1.38806 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99943 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99480 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99718 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99701 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99838 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64668 * 179.97438 * 13 11 10 15 15 C 1.54916 * 104.83158 * 204.17595 * 14 13 11 16 16 H 1.08990 * 111.03963 * 81.07659 * 15 14 13 17 17 N 1.46499 * 111.00137 * 204.91690 * 15 14 13 18 18 C 1.34784 * 119.99893 * 267.19209 * 17 15 14 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 15 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 15 21 21 H 1.09003 * 115.55144 * 325.57986 * 20 18 17 22 22 C 1.53004 * 117.50197 * 111.25456 * 20 18 17 23 23 C 1.52992 * 117.49714 * 179.91456 * 20 18 17 24 24 C 1.52997 * 138.59258 * 121.61338 * 23 20 18 25 25 C 1.52999 * 138.58754 * 23.39310 * 23 20 18 26 26 C 1.55160 * 101.57979 * 322.98747 * 15 14 13 27 27 H 1.09000 * 110.72031 * 153.86711 * 26 15 14 28 28 O 1.42901 * 110.71835 * 277.14370 * 26 15 14 29 29 C 1.47024 * 125.65184 * 0.02562 * 13 11 10 30 30 H 0.97001 * 119.99804 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47561 * 59.99411 * 10 9 7 32 32 H 1.09001 * 109.47042 * 299.99745 * 10 9 7 33 33 H 1.08999 * 110.37254 * 85.33647 * 14 13 11 34 34 H 1.09004 * 110.36578 * 323.00722 * 14 13 11 35 35 H 0.97005 * 120.00261 * 87.19421 * 17 15 14 36 36 H 1.08992 * 117.50006 * 214.97303 * 22 20 18 37 37 H 1.09006 * 117.49534 * 359.97334 * 22 20 18 38 38 H 1.08996 * 117.50031 * 336.59824 * 24 23 20 39 39 H 1.09000 * 117.49478 * 121.61823 * 24 23 20 40 40 H 1.09000 * 117.49939 * 238.38935 * 25 23 20 41 41 H 1.09000 * 117.50226 * 23.38924 * 25 23 20 42 42 H 0.96702 * 114.00082 * 180.02562 * 28 26 15 43 43 H 1.08997 * 109.88030 * 59.47792 * 29 13 11 44 44 H 1.08994 * 110.00997 * 298.38610 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.4655 -7.7679 -0.0019 15 6 3.6843 -8.5021 0.6106 16 1 3.6697 -8.4441 1.6989 17 7 3.7373 -9.8959 0.1625 18 6 3.1582 -10.8636 0.9006 19 8 2.5929 -10.5804 1.9356 20 6 3.2074 -12.2965 0.4365 21 1 3.1644 -12.4428 -0.6428 22 6 4.0606 -13.2732 1.2484 23 6 2.5334 -13.3485 1.3194 24 6 1.4301 -14.4028 1.2093 25 6 1.4361 -13.4214 2.3832 26 6 4.8665 -7.6847 0.0260 27 1 5.7388 -7.7491 0.6763 28 8 5.1844 -8.1291 -1.2944 29 6 4.3111 -6.2451 -0.0014 30 1 -0.4850 0.8401 0.0004 31 1 3.1245 -3.7314 0.8893 32 1 3.1244 -3.7314 -0.8906 33 1 2.2873 -8.1131 -1.0203 34 1 1.5795 -7.9250 0.6134 35 1 4.1892 -10.1223 -0.6655 36 1 4.5784 -14.0623 0.7033 37 1 4.5866 -12.8792 2.1180 38 1 0.6731 -14.2605 0.4382 39 1 1.7007 -15.4380 1.4175 40 1 1.7106 -13.8109 3.3635 41 1 0.6832 -12.6332 2.3845 42 1 5.9174 -7.6502 -1.7048 43 1 4.6460 -5.7017 0.8821 44 1 4.6510 -5.7338 -0.9019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735965186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:43 Heat of formation + Delta-G solvation = -48.598324 kcal Electronic energy + Delta-G solvation = -26456.136112 eV Core-core repulsion = 22502.153154 eV Total energy + Delta-G solvation = -3953.982958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70187 -39.74144 -38.20694 -37.53639 -35.48955 -34.40237 -32.98518 -32.43966 -30.63891 -29.16131 -28.07004 -25.52599 -24.73798 -23.33270 -22.70500 -21.36544 -20.83656 -19.67228 -19.36033 -18.17080 -17.68373 -17.35737 -16.77865 -16.19822 -15.61485 -15.44587 -15.28775 -15.07608 -14.84164 -14.81413 -14.73302 -14.35309 -13.97139 -13.78401 -13.24831 -13.09539 -12.86207 -12.56364 -12.29987 -12.09646 -12.03508 -11.79425 -11.75510 -11.45032 -11.05809 -11.04968 -10.79010 -10.69864 -10.59639 -10.49851 -10.36980 -10.03047 -9.84405 -9.52179 -9.31600 -9.07026 -8.57091 -8.25143 -6.51691 -6.22324 -3.93484 2.16442 2.51453 2.95112 3.03561 3.22331 3.24309 3.28113 3.32115 3.41712 3.57021 3.63260 3.90799 4.11125 4.18187 4.23695 4.37635 4.45187 4.58278 4.70502 4.97367 5.01661 5.02408 5.07909 5.12497 5.16552 5.27248 5.29793 5.32030 5.32638 5.42656 5.52829 5.56576 5.63699 5.70525 5.80400 5.87300 5.87649 6.06652 6.09879 6.34428 7.10942 7.24742 7.57165 7.59236 7.96511 8.33684 8.51520 9.22424 10.85022 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.001995 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.019241 B =14035.169302 C =14816.233762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.511 6.511 13 N -0.622 5.622 14 C 0.101 3.899 15 C 0.143 3.857 16 H 0.117 0.883 17 N -0.709 5.709 18 C 0.540 3.460 19 O -0.529 6.529 20 C -0.141 4.141 21 H 0.125 0.875 22 C -0.100 4.100 23 C -0.203 4.203 24 C -0.129 4.129 25 C -0.113 4.113 26 C 0.087 3.913 27 H 0.087 0.913 28 O -0.557 6.557 29 C 0.074 3.926 30 H 0.269 0.731 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.388 0.612 43 H 0.081 0.919 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.847 -27.186 -0.521 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.384 6.384 13 N -0.360 5.360 14 C -0.023 4.023 15 C 0.036 3.964 16 H 0.135 0.865 17 N -0.361 5.361 18 C 0.327 3.673 19 O -0.405 6.405 20 C -0.162 4.162 21 H 0.143 0.857 22 C -0.137 4.137 23 C -0.203 4.203 24 C -0.166 4.166 25 C -0.150 4.150 26 C 0.027 3.973 27 H 0.104 0.896 28 O -0.364 6.364 29 C -0.051 4.051 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.248 0.752 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.237 0.763 43 H 0.099 0.901 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.926 -27.484 0.345 29.962 hybrid contribution 2.763 1.764 -0.690 3.350 sum 14.689 -25.720 -0.345 29.621 Atomic orbital electron populations 1.70009 1.05954 1.27599 1.46630 1.24999 0.95037 0.99027 0.94522 0.86217 0.79233 0.81231 0.78766 1.19950 1.20783 1.19940 1.22810 0.94836 0.91608 1.59210 0.90985 1.85451 1.04806 0.96276 1.96711 1.23504 1.06560 0.94852 1.04749 1.20060 0.85681 0.85357 0.75144 1.90726 1.14866 1.84991 1.47804 1.48299 1.05996 1.05605 1.76149 1.22485 0.97878 0.80500 1.01458 1.22177 0.93511 0.80488 1.00193 0.86516 1.45587 1.57746 1.05629 1.27157 1.19784 0.77840 0.86057 0.83655 1.90737 1.42524 1.83173 1.24044 1.21935 1.06818 0.88556 0.98908 0.85681 1.22671 0.90865 0.99194 1.00956 1.21180 0.92521 1.01519 1.05092 1.22780 0.97888 0.94740 1.01196 1.22626 0.98178 1.00826 0.93334 1.23068 0.97053 0.92180 0.84994 0.89555 1.86365 1.57459 1.63461 1.29142 1.22752 0.81841 0.97219 1.03259 0.92091 0.89253 0.89318 0.91054 0.89787 0.75192 0.87530 0.88063 0.88429 0.88295 0.88475 0.88010 0.76293 0.90098 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.01 5.35 36.01 0.19 -2.81 16 11 C 0.55 10.90 7.87 -10.99 -0.09 10.81 16 12 O -0.51 -12.32 16.12 5.55 0.09 -12.23 16 13 N -0.62 -9.19 3.33 -170.52 -0.57 -9.76 16 14 C 0.10 1.37 6.59 -2.52 -0.02 1.36 16 15 C 0.14 1.44 3.31 -65.78 -0.22 1.22 16 16 H 0.12 1.30 7.54 -51.93 -0.39 0.91 16 17 N -0.71 -6.25 5.17 -51.73 -0.27 -6.52 16 18 C 0.54 5.74 7.61 -10.98 -0.08 5.65 16 19 O -0.53 -7.71 15.88 5.56 0.09 -7.62 16 20 C -0.14 -1.12 6.19 -91.77 -0.57 -1.68 16 21 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.10 -0.65 10.24 -26.69 -0.27 -0.93 16 23 C -0.20 -1.70 5.06 -154.48 -0.78 -2.48 16 24 C -0.13 -0.88 10.53 -26.73 -0.28 -1.16 16 25 C -0.11 -0.98 10.16 -26.73 -0.27 -1.25 16 26 C 0.09 0.63 4.20 -24.90 -0.10 0.53 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 O -0.56 -3.48 12.14 -35.23 -0.43 -3.91 16 29 C 0.07 0.72 6.25 -3.06 -0.02 0.70 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 35 H 0.41 2.87 7.59 -40.82 -0.31 2.56 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.39 0.91 9.12 45.56 0.42 1.33 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 LS Contribution 389.82 15.07 5.87 5.87 Total: -1.00 -38.07 389.82 -9.76 -47.83 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.74 Total: 2.39 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.31 Total: -3.04 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.10 Total: -41.80 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.25 Total: -23.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.07 -9.76 -47.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735965186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -38.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds