Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47146 * 239.99968 * 3 2 1 5 5 H 1.48501 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47220 * 120.00272 * 3 2 1 7 7 C 1.38806 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99943 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99480 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99718 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99701 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99838 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64668 * 179.97438 * 13 11 10 15 15 C 1.54916 * 104.83158 * 204.17595 * 14 13 11 16 16 H 1.08990 * 111.03963 * 81.07659 * 15 14 13 17 17 N 1.46499 * 111.00137 * 204.91690 * 15 14 13 18 18 C 1.34784 * 119.99893 * 267.19209 * 17 15 14 19 19 O 1.21283 * 119.99649 * 0.02562 * 18 17 15 20 20 C 1.50697 * 119.99774 * 179.72962 * 18 17 15 21 21 H 1.09003 * 115.55144 * 325.57986 * 20 18 17 22 22 C 1.53004 * 117.50197 * 111.25456 * 20 18 17 23 23 C 1.52992 * 117.49714 * 179.91456 * 20 18 17 24 24 C 1.52997 * 138.59258 * 121.61338 * 23 20 18 25 25 C 1.52999 * 138.58754 * 23.39310 * 23 20 18 26 26 C 1.55160 * 101.57979 * 322.98747 * 15 14 13 27 27 H 1.09000 * 110.72031 * 153.86711 * 26 15 14 28 28 O 1.42901 * 110.71835 * 277.14370 * 26 15 14 29 29 C 1.47024 * 125.65184 * 0.02562 * 13 11 10 30 30 H 0.97001 * 119.99804 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47561 * 59.99411 * 10 9 7 32 32 H 1.09001 * 109.47042 * 299.99745 * 10 9 7 33 33 H 1.08999 * 110.37254 * 85.33647 * 14 13 11 34 34 H 1.09004 * 110.36578 * 323.00722 * 14 13 11 35 35 H 0.97005 * 120.00261 * 87.19421 * 17 15 14 36 36 H 1.08992 * 117.50006 * 214.97303 * 22 20 18 37 37 H 1.09006 * 117.49534 * 359.97334 * 22 20 18 38 38 H 1.08996 * 117.50031 * 336.59824 * 24 23 20 39 39 H 1.09000 * 117.49478 * 121.61823 * 24 23 20 40 40 H 1.09000 * 117.49939 * 238.38935 * 25 23 20 41 41 H 1.09000 * 117.50226 * 23.38924 * 25 23 20 42 42 H 0.96702 * 114.00082 * 180.02562 * 28 26 15 43 43 H 1.08997 * 109.88030 * 59.47792 * 29 13 11 44 44 H 1.08994 * 110.00997 * 298.38610 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.4655 -7.7679 -0.0019 15 6 3.6843 -8.5021 0.6106 16 1 3.6697 -8.4441 1.6989 17 7 3.7373 -9.8959 0.1625 18 6 3.1582 -10.8636 0.9006 19 8 2.5929 -10.5804 1.9356 20 6 3.2074 -12.2965 0.4365 21 1 3.1644 -12.4428 -0.6428 22 6 4.0606 -13.2732 1.2484 23 6 2.5334 -13.3485 1.3194 24 6 1.4301 -14.4028 1.2093 25 6 1.4361 -13.4214 2.3832 26 6 4.8665 -7.6847 0.0260 27 1 5.7388 -7.7491 0.6763 28 8 5.1844 -8.1291 -1.2944 29 6 4.3111 -6.2451 -0.0014 30 1 -0.4850 0.8401 0.0004 31 1 3.1245 -3.7314 0.8893 32 1 3.1244 -3.7314 -0.8906 33 1 2.2873 -8.1131 -1.0203 34 1 1.5795 -7.9250 0.6134 35 1 4.1892 -10.1223 -0.6655 36 1 4.5784 -14.0623 0.7033 37 1 4.5866 -12.8792 2.1180 38 1 0.6731 -14.2605 0.4382 39 1 1.7007 -15.4380 1.4175 40 1 1.7106 -13.8109 3.3635 41 1 0.6832 -12.6332 2.3845 42 1 5.9174 -7.6502 -1.7048 43 1 4.6460 -5.7017 0.8821 44 1 4.6510 -5.7338 -0.9019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735965186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -78.416598 kcal Electronic energy + Delta-G solvation = -26457.429129 eV Core-core repulsion = 22502.153154 eV Total energy + Delta-G solvation = -3955.275976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63651 -40.76413 -39.30535 -38.28280 -36.33201 -35.37120 -34.59716 -33.60934 -31.95275 -30.20392 -29.21021 -27.67814 -25.64122 -24.22552 -23.29874 -22.09944 -21.62686 -20.89695 -20.18590 -19.68241 -18.72264 -18.29135 -17.99671 -17.19929 -16.89362 -16.72906 -16.46573 -16.18516 -15.89737 -15.83583 -15.57072 -15.50304 -15.18455 -14.89811 -14.53342 -14.26908 -14.19547 -13.55535 -13.51920 -13.36000 -13.16970 -12.87091 -12.72461 -12.64380 -12.62626 -12.38224 -12.24093 -11.77871 -11.43422 -11.21753 -11.13649 -11.11328 -10.95601 -10.91767 -10.80203 -10.30564 -10.26180 -9.81193 -8.70972 -8.35355 -6.15168 1.16426 1.36415 1.43554 1.44115 1.48135 1.53683 1.79147 2.16356 2.26181 2.71184 2.81882 2.98003 2.98734 3.21320 3.32044 3.36608 3.45411 3.75774 3.81651 3.85603 3.89005 4.05399 4.12870 4.20321 4.36804 4.40828 4.46836 4.52192 4.59578 4.60687 4.71720 4.74469 4.77231 4.82496 4.86786 5.00339 5.04743 5.10282 5.25405 5.35078 5.40224 6.18379 6.26011 6.51100 6.84928 7.01323 7.05238 7.20264 8.73762 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.001995 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.019241 B =14035.169302 C =14816.233762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.116 4.116 11 C 0.544 3.456 12 O -0.569 6.569 13 N -0.612 5.612 14 C 0.100 3.900 15 C 0.146 3.854 16 H 0.105 0.895 17 N -0.693 5.693 18 C 0.535 3.465 19 O -0.577 6.577 20 C -0.146 4.146 21 H 0.150 0.850 22 C -0.078 4.078 23 C -0.230 4.230 24 C -0.108 4.108 25 C -0.137 4.137 26 C 0.111 3.889 27 H 0.125 0.875 28 O -0.564 6.564 29 C 0.059 3.941 30 H 0.271 0.729 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.424 0.576 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.409 0.591 43 H 0.098 0.902 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.303 -28.133 -1.559 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.267 4.267 11 C 0.333 3.667 12 O -0.448 6.448 13 N -0.348 5.348 14 C -0.025 4.025 15 C 0.039 3.961 16 H 0.123 0.877 17 N -0.346 5.346 18 C 0.323 3.677 19 O -0.456 6.456 20 C -0.167 4.167 21 H 0.168 0.832 22 C -0.115 4.115 23 C -0.231 4.231 24 C -0.144 4.144 25 C -0.174 4.174 26 C 0.051 3.949 27 H 0.143 0.857 28 O -0.374 6.374 29 C -0.063 4.063 30 H 0.080 0.920 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.263 0.737 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.262 0.738 43 H 0.116 0.884 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.483 -28.470 -0.738 32.905 hybrid contribution 1.410 1.925 -0.385 2.417 sum 17.893 -26.545 -1.123 32.032 Atomic orbital electron populations 1.70192 1.08096 1.28715 1.47877 1.26189 0.95986 1.03480 0.93676 0.84963 0.77754 0.75414 0.79602 1.18425 1.20541 1.18533 1.23157 0.95399 0.91614 1.59076 0.89559 1.85713 1.10680 0.99520 1.97069 1.23275 1.03420 0.93184 1.06775 1.19949 0.85405 0.86151 0.75215 1.90701 1.17386 1.85767 1.50921 1.48198 1.08104 1.04922 1.73557 1.22532 0.98571 0.80366 1.00993 1.22020 0.93260 0.81222 0.99592 0.87660 1.45472 1.57009 1.04782 1.27312 1.20373 0.76852 0.87467 0.83030 1.90724 1.44599 1.84049 1.26270 1.22028 1.07790 0.86643 1.00203 0.83231 1.22790 0.89568 0.98760 1.00378 1.21479 0.94049 1.02457 1.05088 1.22835 0.96904 0.95173 0.99524 1.22576 0.98703 1.01564 0.94537 1.22901 0.96658 0.89091 0.86236 0.85708 1.86331 1.58747 1.63746 1.28584 1.23280 0.78186 0.99807 1.05047 0.91995 0.87063 0.86996 0.91103 0.93506 0.73677 0.84463 0.88671 0.88208 0.86158 0.88020 0.90681 0.73794 0.88398 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.63 13.22 21.65 0.29 -56.34 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.54 -31.11 9.50 67.96 0.65 -30.47 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 10 C -0.12 -4.70 5.35 71.24 0.38 -4.31 16 11 C 0.54 21.99 7.87 87.66 0.69 22.68 16 12 O -0.57 -29.10 16.12 -3.04 -0.05 -29.15 16 13 N -0.61 -17.71 3.33 -811.79 -2.70 -20.41 16 14 C 0.10 2.76 6.59 86.86 0.57 3.33 16 15 C 0.15 2.76 3.31 46.39 0.15 2.91 16 16 H 0.11 2.31 7.54 -2.39 -0.02 2.29 16 17 N -0.69 -11.17 5.17 -435.95 -2.25 -13.42 16 18 C 0.53 11.15 7.61 87.65 0.67 11.81 16 19 O -0.58 -17.58 15.88 -3.04 -0.05 -17.62 16 20 C -0.15 -2.07 6.19 -11.54 -0.07 -2.14 16 21 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 22 C -0.08 -0.83 10.24 30.62 0.31 -0.52 16 23 C -0.23 -3.64 5.06 -52.16 -0.26 -3.90 16 24 C -0.11 -1.35 10.53 30.60 0.32 -1.02 16 25 C -0.14 -2.49 10.16 30.60 0.31 -2.18 16 26 C 0.11 1.19 4.20 31.78 0.13 1.33 16 27 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 28 O -0.56 -4.57 12.14 -148.98 -1.81 -6.38 16 29 C 0.06 0.96 6.25 86.73 0.54 1.50 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 32 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.63 8.04 -2.38 -0.02 1.61 16 35 H 0.42 4.73 7.59 -92.70 -0.70 4.03 16 36 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.41 -0.18 9.12 -74.06 -0.68 -0.85 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 1.32 8.07 -2.39 -0.02 1.30 16 Total: -1.00 -89.64 389.82 -1.19 -90.83 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.34 Total: 17.06 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 4.86 Total: 0.13 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -4.67 Total: -90.18 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.91 Total: -53.15 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -89.64 -1.19 -90.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735965186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.410 kcal (2) G-P(sol) polarization free energy of solvation -89.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds