Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47350 * 269.99979 * 3 2 1 5 5 H 1.48498 * 109.47178 * 30.00255 * 3 2 1 6 6 H 1.48502 * 109.46851 * 150.00064 * 3 2 1 7 7 C 1.38800 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00007 * 359.97438 * 7 2 1 9 9 S 1.76194 * 120.00132 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00216 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47339 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99721 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99853 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99812 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.77552 * 36.79190 * 14 13 11 16 16 C 1.54316 * 110.72484 * 273.55403 * 14 13 11 17 17 N 1.47019 * 107.40175 * 219.52110 * 16 14 13 18 18 C 1.34779 * 125.64831 * 178.89967 * 17 16 14 19 19 O 1.21613 * 119.99958 * 355.01779 * 18 17 16 20 20 C 1.47096 * 120.00075 * 175.02515 * 18 17 16 21 21 C 1.32616 * 124.62076 * 284.84433 * 20 18 17 22 22 C 1.51111 * 110.75996 * 179.97438 * 21 20 18 23 23 C 1.54569 * 104.84111 * 16.59953 * 22 21 20 24 24 C 1.51119 * 124.62258 * 104.54334 * 20 18 17 25 25 C 1.47424 * 108.70488 * 358.86076 * 17 16 14 26 26 C 1.54911 * 104.83092 * 24.12876 * 25 17 16 27 27 H 1.09000 * 111.00617 * 81.10422 * 26 25 17 28 28 O 1.42898 * 111.00418 * 204.92111 * 26 25 17 29 29 H 0.96996 * 119.99893 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47466 * 59.99958 * 10 9 7 31 31 H 1.08995 * 109.47004 * 299.99964 * 10 9 7 32 32 H 0.97000 * 120.00162 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.88668 * 100.01968 * 16 14 13 34 34 H 1.09007 * 109.88106 * 339.01345 * 16 14 13 35 35 H 1.07999 * 124.61633 * 359.97438 * 21 20 18 36 36 H 1.08999 * 110.36194 * 135.44243 * 22 21 20 37 37 H 1.09001 * 110.36836 * 257.64864 * 22 21 20 38 38 H 1.09003 * 110.98519 * 93.07174 * 23 22 21 39 39 H 1.09005 * 110.98785 * 216.83171 * 23 22 21 40 40 H 1.08997 * 110.36574 * 282.24038 * 24 20 18 41 41 H 1.08998 * 110.36267 * 44.56233 * 24 20 18 42 42 H 1.08999 * 110.36786 * 142.96787 * 25 17 16 43 43 H 1.09004 * 110.36373 * 265.29401 * 25 17 16 44 44 H 0.96699 * 113.99690 * 298.54224 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2326 -0.0002 12 8 6.3440 -2.2963 0.0003 13 7 6.0457 -4.4947 0.0001 14 6 7.4907 -4.7358 -0.0006 15 1 8.0067 -3.9942 0.6091 16 6 8.0433 -4.7381 -1.4414 17 7 9.0487 -5.8075 -1.5251 18 6 9.7472 -6.1445 -2.6274 19 8 9.5039 -5.6052 -3.6899 20 6 10.8036 -7.1647 -2.5454 21 6 12.0014 -6.9678 -2.0112 22 6 12.8371 -8.2242 -2.0921 23 6 12.1224 -9.1083 -3.1393 24 6 10.6698 -8.5820 -3.0524 25 6 9.1672 -6.4495 -0.2033 26 6 7.8119 -6.1734 0.4945 27 1 7.0504 -6.8788 0.1620 28 8 7.9516 -6.2071 1.9162 29 1 -0.4850 0.8400 -0.0004 30 1 3.6440 -3.4315 -0.8904 31 1 3.6433 -3.4317 0.8895 32 1 5.4290 -5.2435 0.0000 33 1 8.5058 -3.7762 -1.6627 34 1 7.2360 -4.9322 -2.1478 35 1 12.3342 -6.0364 -1.5776 36 1 13.8481 -7.9866 -2.4227 37 1 12.8632 -8.7254 -1.1245 38 1 12.5399 -8.9504 -4.1338 39 1 12.1715 -10.1610 -2.8604 40 1 10.0880 -9.1819 -2.3526 41 1 10.2046 -8.5898 -4.0381 42 1 9.3246 -7.5222 -0.3153 43 1 9.9838 -6.0024 0.3638 44 1 8.2452 -7.0609 2.2624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739397997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -95.382142 kcal Electronic energy + Delta-G solvation = -26573.010860 eV Core-core repulsion = 22616.999203 eV Total energy + Delta-G solvation = -3956.011657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88515 -39.62227 -38.52939 -37.83830 -35.96652 -34.30938 -32.43773 -31.13137 -29.81928 -29.17715 -28.92020 -27.94516 -25.61689 -24.35743 -22.06102 -21.47477 -21.16020 -20.50297 -18.95156 -18.07126 -17.88247 -17.46512 -16.81657 -16.42935 -16.15941 -15.67921 -15.63942 -15.14168 -14.97284 -14.81724 -14.20666 -13.92586 -13.80674 -13.54068 -13.35949 -13.29642 -13.07245 -12.79476 -12.71393 -12.59962 -12.31348 -12.18464 -11.94687 -11.76275 -11.66516 -11.28778 -11.22780 -11.00433 -10.87266 -10.61187 -10.30202 -9.86241 -9.62300 -9.39980 -9.23541 -9.07392 -8.99685 -8.50983 -6.92257 -6.28805 -4.00762 1.27419 2.19059 2.43054 2.72827 2.86789 3.20987 3.34160 3.50885 3.51510 3.60461 3.80825 4.07374 4.12251 4.16959 4.33445 4.46017 4.49335 4.50609 4.68788 4.75057 4.78809 4.90066 4.98778 5.10304 5.11088 5.12060 5.23298 5.27221 5.28867 5.33826 5.45175 5.58683 5.62909 5.68647 5.73907 5.77053 5.82227 5.98921 6.09175 6.36823 6.98622 7.08177 7.46220 7.73133 7.94177 8.38008 8.41643 9.17308 10.80350 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002058 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.782883 B =13601.486083 C =14030.679669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.513 6.513 13 N -0.726 5.726 14 C 0.149 3.851 15 H 0.115 0.885 16 C 0.096 3.904 17 N -0.611 5.611 18 C 0.583 3.417 19 O -0.525 6.525 20 C -0.171 4.171 21 C -0.114 4.114 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.079 4.079 25 C 0.074 3.926 26 C 0.086 3.914 27 H 0.083 0.917 28 O -0.544 6.544 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.403 0.597 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.670 -23.833 0.161 34.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.387 6.387 13 N -0.380 5.380 14 C 0.042 3.958 15 H 0.133 0.867 16 C -0.028 4.028 17 N -0.347 5.347 18 C 0.372 3.628 19 O -0.400 6.400 20 C -0.174 4.174 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.161 4.161 24 C -0.116 4.116 25 C -0.050 4.050 26 C 0.025 3.975 27 H 0.100 0.900 28 O -0.349 6.349 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 25.472 -21.248 -0.535 33.175 hybrid contribution -0.952 -1.189 0.052 1.524 sum 24.520 -22.437 -0.483 33.240 Atomic orbital electron populations 1.69937 1.05904 1.27773 1.48020 1.24714 0.94462 0.98976 0.93168 0.86734 0.81888 0.83271 0.79957 1.19191 1.19932 1.15918 1.22309 0.88223 0.97553 1.58842 0.89352 1.84810 1.09348 0.99780 1.97432 1.23275 0.93556 1.04639 1.05980 1.20356 0.90788 0.82039 0.74734 1.90715 1.58710 1.42047 1.47204 1.45840 1.05854 1.08563 1.77740 1.21792 0.83075 0.96304 0.94624 0.86719 1.22489 0.91793 0.91436 0.97098 1.48259 1.40732 1.35817 1.09869 1.17788 0.80732 0.81996 0.82306 1.90867 1.66901 1.54502 1.27746 1.21733 0.95446 0.96374 1.03842 1.23852 0.94352 0.98930 0.96153 1.21396 0.99166 0.93338 0.99954 1.22469 0.94396 0.99468 0.99726 1.21183 0.98072 0.90588 1.01766 1.23010 0.98789 0.99061 0.84119 1.23223 0.95432 0.97096 0.81763 0.89953 1.86642 1.90590 1.39012 1.18685 0.91935 0.88339 0.88247 0.76254 0.89744 0.90083 0.85110 0.90396 0.89777 0.90635 0.90385 0.90257 0.90404 0.89708 0.89850 0.76915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.90 27.74 -169.99 -4.72 17.19 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.36 6.16 36.01 0.22 -2.13 16 11 C 0.53 9.25 7.84 -10.98 -0.09 9.17 16 12 O -0.51 -10.84 15.59 5.56 0.09 -10.75 16 13 N -0.73 -8.85 5.13 -51.90 -0.27 -9.11 16 14 C 0.15 1.62 2.98 -65.96 -0.20 1.43 16 15 H 0.11 1.50 7.70 -51.93 -0.40 1.10 16 16 C 0.10 1.12 6.61 -3.07 -0.02 1.10 16 17 N -0.61 -6.00 3.33 -171.92 -0.57 -6.58 16 18 C 0.58 6.81 7.60 -12.67 -0.10 6.71 16 19 O -0.52 -8.53 17.44 5.27 0.09 -8.44 16 20 C -0.17 -1.41 4.80 -102.73 -0.49 -1.90 16 21 C -0.11 -0.73 10.70 -36.01 -0.39 -1.12 16 22 C -0.10 -0.43 6.80 -26.86 -0.18 -0.61 16 23 C -0.12 -0.54 7.17 -24.99 -0.18 -0.72 16 24 C -0.08 -0.48 6.75 -26.76 -0.18 -0.67 16 25 C 0.07 0.46 6.37 -2.53 -0.02 0.44 16 26 C 0.09 0.59 4.05 -24.45 -0.10 0.49 16 27 H 0.08 0.45 8.01 -51.93 -0.42 0.04 16 28 O -0.54 -3.80 13.48 -35.23 -0.47 -4.28 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 31 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 32 H 0.40 3.72 8.53 -40.82 -0.35 3.37 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.02 8.03 -51.93 -0.42 0.61 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.34 7.78 -51.93 -0.40 -0.07 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.38 0.76 9.11 45.56 0.42 1.17 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -38.10 384.51 -8.57 -46.67 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.80 Total: 0.69 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.50 Total: 0.17 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.06 Total: -41.51 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.30 Total: -23.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.10 -8.57 -46.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739397997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.711 kcal (2) G-P(sol) polarization free energy of solvation -38.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds