Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47350 * 269.99979 * 3 2 1 5 5 H 1.48498 * 109.47178 * 30.00255 * 3 2 1 6 6 H 1.48502 * 109.46851 * 150.00064 * 3 2 1 7 7 C 1.38800 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00007 * 359.97438 * 7 2 1 9 9 S 1.76194 * 120.00132 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00216 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47339 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99721 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99853 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99812 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.77552 * 36.79190 * 14 13 11 16 16 C 1.54316 * 110.72484 * 273.55403 * 14 13 11 17 17 N 1.47019 * 107.40175 * 219.52110 * 16 14 13 18 18 C 1.34779 * 125.64831 * 178.89967 * 17 16 14 19 19 O 1.21613 * 119.99958 * 355.01779 * 18 17 16 20 20 C 1.47096 * 120.00075 * 175.02515 * 18 17 16 21 21 C 1.32616 * 124.62076 * 284.84433 * 20 18 17 22 22 C 1.51111 * 110.75996 * 179.97438 * 21 20 18 23 23 C 1.54569 * 104.84111 * 16.59953 * 22 21 20 24 24 C 1.51119 * 124.62258 * 104.54334 * 20 18 17 25 25 C 1.47424 * 108.70488 * 358.86076 * 17 16 14 26 26 C 1.54911 * 104.83092 * 24.12876 * 25 17 16 27 27 H 1.09000 * 111.00617 * 81.10422 * 26 25 17 28 28 O 1.42898 * 111.00418 * 204.92111 * 26 25 17 29 29 H 0.96996 * 119.99893 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47466 * 59.99958 * 10 9 7 31 31 H 1.08995 * 109.47004 * 299.99964 * 10 9 7 32 32 H 0.97000 * 120.00162 * 0.02562 * 13 11 10 33 33 H 1.08996 * 109.88668 * 100.01968 * 16 14 13 34 34 H 1.09007 * 109.88106 * 339.01345 * 16 14 13 35 35 H 1.07999 * 124.61633 * 359.97438 * 21 20 18 36 36 H 1.08999 * 110.36194 * 135.44243 * 22 21 20 37 37 H 1.09001 * 110.36836 * 257.64864 * 22 21 20 38 38 H 1.09003 * 110.98519 * 93.07174 * 23 22 21 39 39 H 1.09005 * 110.98785 * 216.83171 * 23 22 21 40 40 H 1.08997 * 110.36574 * 282.24038 * 24 20 18 41 41 H 1.08998 * 110.36267 * 44.56233 * 24 20 18 42 42 H 1.08999 * 110.36786 * 142.96787 * 25 17 16 43 43 H 1.09004 * 110.36373 * 265.29401 * 25 17 16 44 44 H 0.96699 * 113.99690 * 298.54224 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2326 -0.0002 12 8 6.3440 -2.2963 0.0003 13 7 6.0457 -4.4947 0.0001 14 6 7.4907 -4.7358 -0.0006 15 1 8.0067 -3.9942 0.6091 16 6 8.0433 -4.7381 -1.4414 17 7 9.0487 -5.8075 -1.5251 18 6 9.7472 -6.1445 -2.6274 19 8 9.5039 -5.6052 -3.6899 20 6 10.8036 -7.1647 -2.5454 21 6 12.0014 -6.9678 -2.0112 22 6 12.8371 -8.2242 -2.0921 23 6 12.1224 -9.1083 -3.1393 24 6 10.6698 -8.5820 -3.0524 25 6 9.1672 -6.4495 -0.2033 26 6 7.8119 -6.1734 0.4945 27 1 7.0504 -6.8788 0.1620 28 8 7.9516 -6.2071 1.9162 29 1 -0.4850 0.8400 -0.0004 30 1 3.6440 -3.4315 -0.8904 31 1 3.6433 -3.4317 0.8895 32 1 5.4290 -5.2435 0.0000 33 1 8.5058 -3.7762 -1.6627 34 1 7.2360 -4.9322 -2.1478 35 1 12.3342 -6.0364 -1.5776 36 1 13.8481 -7.9866 -2.4227 37 1 12.8632 -8.7254 -1.1245 38 1 12.5399 -8.9504 -4.1338 39 1 12.1715 -10.1610 -2.8604 40 1 10.0880 -9.1819 -2.3526 41 1 10.2046 -8.5898 -4.0381 42 1 9.3246 -7.5222 -0.3153 43 1 9.9838 -6.0024 0.3638 44 1 8.2452 -7.0609 2.2624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739397997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -126.072488 kcal Electronic energy + Delta-G solvation = -26574.341693 eV Core-core repulsion = 22616.999203 eV Total energy + Delta-G solvation = -3957.342490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73870 -40.70729 -39.36303 -38.55616 -36.66488 -35.47603 -34.67948 -32.18790 -30.72919 -29.91314 -29.37428 -28.87766 -27.85010 -25.16689 -22.71065 -22.35292 -21.75527 -21.54480 -19.99940 -19.55740 -18.74369 -18.23101 -17.85894 -17.47647 -17.18574 -16.98225 -16.63298 -16.43566 -16.18535 -15.82005 -15.43753 -15.05512 -14.97239 -14.78041 -14.52196 -14.07862 -13.95798 -13.63337 -13.60814 -13.54318 -13.36049 -13.22371 -13.02195 -12.85162 -12.68583 -12.65743 -12.08768 -12.01943 -11.93502 -11.84117 -11.52137 -11.18358 -11.15238 -11.04930 -10.55143 -10.37840 -9.95691 -9.87692 -9.01146 -8.52523 -6.23324 0.70387 0.95513 1.30430 1.35406 1.43551 1.45511 1.51382 1.72369 2.14389 2.24180 2.69097 2.85693 2.89929 3.11627 3.46789 3.53320 3.69534 3.81667 3.86588 4.00565 4.04441 4.14871 4.19827 4.22358 4.31470 4.42799 4.44617 4.58177 4.62121 4.71835 4.79858 4.80560 4.90262 4.96447 5.00085 5.19170 5.27253 5.32737 5.38783 5.56531 5.69940 6.10703 6.20346 6.33620 6.84376 6.87282 6.92725 7.08383 8.59723 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.002058 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.782883 B =13601.486083 C =14030.679669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.111 4.111 11 C 0.539 3.461 12 O -0.557 6.557 13 N -0.701 5.701 14 C 0.145 3.855 15 H 0.093 0.907 16 C 0.099 3.901 17 N -0.606 5.606 18 C 0.578 3.422 19 O -0.586 6.586 20 C -0.196 4.196 21 C -0.097 4.097 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.077 4.077 25 C 0.077 3.923 26 C 0.104 3.896 27 H 0.108 0.892 28 O -0.560 6.560 29 H 0.277 0.723 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.421 0.579 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.811 -26.637 1.540 37.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.049 5.951 10 C -0.261 4.261 11 C 0.325 3.675 12 O -0.434 6.434 13 N -0.355 5.355 14 C 0.039 3.961 15 H 0.111 0.889 16 C -0.026 4.026 17 N -0.340 5.340 18 C 0.369 3.631 19 O -0.466 6.466 20 C -0.199 4.199 21 C -0.116 4.116 22 C -0.135 4.135 23 C -0.157 4.157 24 C -0.115 4.115 25 C -0.046 4.046 26 C 0.044 3.956 27 H 0.125 0.875 28 O -0.369 6.369 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.259 0.741 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.138 0.862 43 H 0.110 0.890 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 27.617 -24.144 0.897 36.694 hybrid contribution -1.552 -0.459 -0.342 1.654 sum 26.065 -24.603 0.555 35.847 Atomic orbital electron populations 1.70011 1.07223 1.28999 1.49109 1.25550 0.95286 1.02204 0.92949 0.85881 0.80707 0.79741 0.80131 1.18888 1.18236 1.16108 1.22450 0.90133 0.96745 1.58226 0.91763 1.84757 1.06593 1.06125 1.97598 1.23259 0.95383 0.99737 1.07757 1.20038 0.89634 0.83184 0.74677 1.90707 1.59299 1.43754 1.49684 1.45550 1.07101 1.07320 1.75503 1.21820 0.81450 0.98926 0.93941 0.88887 1.22240 0.91899 0.90999 0.97414 1.48320 1.39587 1.35021 1.11099 1.18467 0.81003 0.81967 0.81656 1.90826 1.68877 1.56798 1.30096 1.21659 0.95120 0.96667 1.06425 1.24144 0.93648 0.99859 0.93946 1.21469 0.98890 0.92018 1.01078 1.22496 0.92912 1.00723 0.99585 1.21238 0.99530 0.89610 1.01083 1.23255 0.98652 1.00873 0.81807 1.23056 0.96334 0.94020 0.82240 0.87466 1.86593 1.90849 1.41342 1.18165 0.91366 0.86645 0.86372 0.74078 0.92716 0.91271 0.85055 0.89510 0.87376 0.91414 0.88193 0.88350 0.92393 0.86202 0.89000 0.74016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 2 C 0.05 2.70 5.50 84.86 0.47 3.16 16 3 Si 0.91 45.56 27.74 68.60 1.90 47.47 16 4 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 7 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 8 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 9 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 11 C 0.54 18.40 7.84 87.66 0.69 19.09 16 12 O -0.56 -23.90 15.59 -3.02 -0.05 -23.95 16 13 N -0.70 -16.11 5.13 -436.52 -2.24 -18.35 16 14 C 0.15 3.02 2.98 46.26 0.14 3.16 16 15 H 0.09 2.43 7.70 -2.39 -0.02 2.41 16 16 C 0.10 2.38 6.61 86.73 0.57 2.95 16 17 N -0.61 -11.49 3.33 -816.07 -2.71 -14.21 16 18 C 0.58 13.59 7.60 86.57 0.66 14.25 16 19 O -0.59 -20.18 17.44 -4.07 -0.07 -20.25 16 20 C -0.20 -2.95 4.80 -18.57 -0.09 -3.04 16 21 C -0.10 -1.02 10.70 24.66 0.26 -0.76 16 22 C -0.10 -0.48 6.80 30.51 0.21 -0.27 16 23 C -0.12 -0.71 7.17 31.72 0.23 -0.48 16 24 C -0.08 -0.80 6.75 30.58 0.21 -0.59 16 25 C 0.08 0.71 6.37 86.86 0.55 1.26 16 26 C 0.10 1.11 4.05 32.07 0.13 1.24 16 27 H 0.11 0.69 8.01 -2.39 -0.02 0.67 16 28 O -0.56 -5.78 13.48 -148.98 -2.01 -7.78 16 29 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 31 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 32 H 0.42 6.66 8.53 -92.71 -0.79 5.87 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.81 8.03 -2.38 -0.02 1.79 16 35 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.09 0.33 8.14 -2.39 -0.02 0.32 16 37 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.12 0.37 7.78 -2.39 -0.02 0.35 16 43 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.41 -0.23 9.11 -74.06 -0.67 -0.91 16 Total: -1.00 -87.25 384.51 -1.25 -88.50 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.47 Total: 8.24 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.14 Total: 6.10 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -4.65 Total: -88.26 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.13 Total: -51.98 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -87.25 -1.25 -88.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739397997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.571 kcal (2) G-P(sol) polarization free energy of solvation -87.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds