Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46891 * 141.90627 * 3 2 1 5 5 C 1.36719 * 119.99736 * 263.96250 * 4 3 2 6 6 H 1.07999 * 119.99937 * 140.94635 * 5 4 3 7 7 C 1.39127 * 119.99884 * 320.95152 * 5 4 3 8 8 N 1.31321 * 120.00272 * 164.16216 * 7 5 4 9 9 Si 1.86803 * 120.00277 * 344.15960 * 7 5 4 10 10 H 1.48499 * 109.47048 * 89.66849 * 9 7 5 11 11 H 1.48500 * 109.47309 * 209.67395 * 9 7 5 12 12 H 1.48507 * 109.46961 * 329.66794 * 9 7 5 13 13 C 1.34777 * 120.00844 * 83.96727 * 4 3 2 14 14 O 1.21717 * 120.00661 * 182.92604 * 13 4 3 15 15 C 1.46531 * 119.99259 * 2.92356 * 13 4 3 16 16 N 1.29821 * 119.55885 * 353.28213 * 15 13 4 17 17 N 1.39855 * 121.12167 * 180.38366 * 16 15 13 18 18 C 1.46497 * 119.79625 * 199.18469 * 17 16 15 19 19 C 1.50694 * 109.47469 * 269.98076 * 18 17 16 20 20 C 1.38235 * 120.00105 * 269.72566 * 19 18 17 21 21 C 1.38236 * 120.00107 * 179.76755 * 20 19 18 22 22 C 1.38239 * 119.99765 * 0.50251 * 21 20 19 23 23 C 1.38232 * 119.99826 * 359.75192 * 22 21 20 24 24 C 1.38231 * 120.00265 * 359.97438 * 23 22 21 25 25 C 1.34753 * 120.40922 * 19.16553 * 17 16 15 26 26 O 1.21261 * 120.11418 * 179.71508 * 25 17 16 27 27 C 1.50769 * 119.76593 * 359.74154 * 25 17 16 28 28 C 1.50549 * 119.55453 * 173.55754 * 15 13 4 29 29 H 1.08999 * 109.47411 * 21.89737 * 3 2 1 30 30 H 1.09003 * 109.46796 * 261.89680 * 3 2 1 31 31 H 0.96996 * 120.00652 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47263 * 29.98212 * 18 17 16 33 33 H 1.09002 * 109.47374 * 149.97826 * 18 17 16 34 34 H 1.08002 * 119.99988 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.00033 * 180.23097 * 21 20 19 36 36 H 1.07994 * 119.99695 * 179.72792 * 22 21 20 37 37 H 1.08002 * 119.99313 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.99629 * 179.97438 * 24 23 22 39 39 H 1.09007 * 109.50965 * 206.79172 * 27 25 17 40 40 H 1.08998 * 109.55661 * 86.66428 * 27 25 17 41 41 H 1.09008 * 109.44596 * 265.59289 * 28 15 13 42 42 H 1.09002 * 109.44879 * 25.49896 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0879 -0.8521 5 6 3.4412 0.8361 -2.1508 6 1 3.1983 1.5515 -2.9225 7 6 4.1053 -0.3418 -2.4781 8 7 4.1637 -0.7368 -3.7292 9 14 4.9142 -1.3614 -1.1381 10 1 3.9366 -2.3445 -0.6061 11 1 6.0838 -2.0818 -1.7022 12 1 5.3652 -0.4683 -0.0407 13 6 3.2043 2.3363 -0.3560 14 8 3.5586 3.2497 -1.0783 15 6 2.8955 2.5940 1.0530 16 7 2.3939 1.6446 1.7827 17 7 2.0795 1.8569 3.1288 18 6 1.9221 0.7118 4.0290 19 6 0.4837 0.2626 4.0237 20 6 -0.4109 0.7976 4.9316 21 6 -1.7314 0.3891 4.9236 22 6 -2.1552 -0.5621 4.0144 23 6 -1.2594 -1.1009 3.1099 24 6 0.0599 -0.6883 3.1142 25 6 1.9209 3.1081 3.6031 26 8 1.6433 3.2858 4.7701 27 6 2.0892 4.2864 2.6776 28 6 3.1583 3.9580 1.6335 29 1 2.9719 -0.9527 -0.3833 30 1 2.9713 0.1457 1.0175 31 1 4.6270 -1.5578 -3.9575 32 1 2.5593 -0.1058 3.6917 33 1 2.2083 1.0022 5.0399 34 1 -0.0787 1.5373 5.6451 35 1 -2.4311 0.8098 5.6306 36 1 -3.1859 -0.8844 4.0110 37 1 -1.5904 -1.8444 2.3998 38 1 0.7597 -1.1096 2.4078 39 1 2.3978 5.1596 3.2524 40 1 1.1437 4.4953 2.1773 41 1 4.1413 3.9686 2.1045 42 1 3.1296 4.7026 0.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072059642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 69.793852 kcal Electronic energy + Delta-G solvation = -30149.861084 eV Core-core repulsion = 26097.860796 eV Total energy + Delta-G solvation = -4052.000288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82751 -39.41365 -38.93782 -36.89169 -36.31909 -34.91470 -34.46670 -32.57569 -31.70906 -30.90799 -30.85227 -27.88214 -27.18459 -25.77398 -24.70855 -23.10968 -22.50582 -21.49806 -20.23111 -18.72180 -17.83351 -17.69679 -17.21745 -16.77325 -16.67763 -15.91324 -15.67413 -15.36166 -15.12762 -14.98573 -14.48616 -14.19159 -14.08946 -13.82474 -13.46338 -13.29038 -13.12883 -12.93943 -12.71392 -12.56994 -12.47073 -12.38109 -12.23477 -12.17123 -11.92142 -11.69716 -11.49748 -11.12173 -11.02654 -10.95514 -10.79375 -10.35455 -10.14699 -9.64468 -9.39802 -9.01907 -8.87303 -8.84485 -8.62193 -8.24797 -6.70721 -4.33267 1.11375 1.20787 1.44793 2.36440 2.47438 2.79016 3.00418 3.01406 3.07310 3.38315 3.65512 3.78877 3.84504 3.85610 4.17843 4.50065 4.55177 4.71631 4.77062 4.80125 4.89007 4.99677 5.02204 5.08191 5.13799 5.25169 5.33789 5.42421 5.54750 5.55521 5.62414 5.65385 5.71279 5.84041 5.96986 6.06360 6.20963 6.25987 6.46413 6.53123 6.60681 7.00306 7.14323 7.64468 7.85987 7.96541 8.09094 8.12744 8.54294 8.88342 9.26965 10.38843 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.004942 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.220933 B = 5664.210077 C = 7064.919896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.217 3.783 3 C 0.160 3.840 4 N -0.424 5.424 5 C -0.318 4.318 6 H 0.118 0.882 7 C 0.066 3.934 8 N -0.841 5.841 9 Si 0.869 3.131 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.253 1.253 13 C 0.507 3.493 14 O -0.538 6.538 15 C 0.103 3.897 16 N -0.240 5.240 17 N -0.456 5.456 18 C 0.174 3.826 19 C -0.112 4.112 20 C -0.098 4.098 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.085 4.085 25 C 0.499 3.501 26 O -0.528 6.528 27 C -0.141 4.141 28 C -0.105 4.105 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.282 0.718 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 0.159 15.580 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.102 4.102 3 C 0.034 3.966 4 N -0.145 5.145 5 C -0.446 4.446 6 H 0.135 0.865 7 C -0.144 4.144 8 N -0.475 5.475 9 Si 0.695 3.305 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.177 1.177 13 C 0.295 3.705 14 O -0.416 6.416 15 C -0.088 4.088 16 N -0.053 5.053 17 N -0.274 5.274 18 C 0.053 3.947 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.147 4.147 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.104 4.104 25 C 0.287 3.713 26 O -0.402 6.402 27 C -0.181 4.181 28 C -0.145 4.145 29 H 0.125 0.875 30 H 0.157 0.843 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.861 -0.257 15.811 16.543 hybrid contribution 0.867 0.004 0.489 0.995 sum -3.994 -0.253 16.299 16.784 Atomic orbital electron populations 1.81049 1.12824 1.08147 1.09423 1.29436 0.95269 0.93221 0.92230 1.20093 0.82163 0.94595 0.99779 1.43517 1.53741 1.05727 1.11480 1.19220 1.36858 1.07170 0.81398 0.86466 1.25466 0.95498 0.96925 0.96540 1.69620 1.37868 1.22376 1.17611 0.87109 0.80075 0.80682 0.82648 1.19120 1.20319 1.17697 1.17199 0.84417 0.84729 0.84193 1.90760 1.50410 1.42532 1.57906 1.25403 0.93293 0.93825 0.96322 1.75255 1.12976 1.25981 0.91071 1.49195 1.66128 1.06134 1.05993 1.20371 0.93326 0.87446 0.93547 1.20067 0.95982 0.98028 0.97216 1.21151 0.93210 0.98800 0.98511 1.21104 0.95896 0.98204 0.99504 1.21160 0.99400 0.97064 0.95722 1.21103 0.93467 1.00267 0.98466 1.21044 0.96215 0.96331 0.96786 1.21248 0.76102 0.84951 0.88975 1.90677 1.46899 1.85166 1.17459 1.21828 1.02028 0.97090 0.97176 1.20867 0.99437 0.95049 0.99153 0.87481 0.84283 0.90718 0.88613 0.88128 0.85680 0.86332 0.86364 0.86182 0.86336 0.86718 0.87794 0.88296 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.67 18.23 42.15 0.77 -7.90 16 2 C 0.22 4.13 13.38 -20.76 -0.28 3.86 16 3 C 0.16 2.95 4.02 -6.83 -0.03 2.92 16 4 N -0.42 -9.14 2.16 -119.49 -0.26 -9.40 16 5 C -0.32 -7.97 9.40 -15.04 -0.14 -8.11 16 6 H 0.12 3.32 7.91 -52.49 -0.42 2.91 16 7 C 0.07 1.59 5.37 -17.44 -0.09 1.50 16 8 N -0.84 -21.74 13.95 55.51 0.77 -20.96 16 9 Si 0.87 17.24 24.88 -169.99 -4.23 13.01 16 10 H -0.26 -4.74 6.51 56.52 0.37 -4.38 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.25 -4.78 7.11 56.52 0.40 -4.38 16 13 C 0.51 10.46 7.51 -12.92 -0.10 10.37 16 14 O -0.54 -12.57 16.08 5.17 0.08 -12.49 16 15 C 0.10 1.68 6.67 -80.18 -0.53 1.15 16 16 N -0.24 -3.74 6.04 34.87 0.21 -3.53 16 17 N -0.46 -6.48 3.45 -61.46 -0.21 -6.69 16 18 C 0.17 2.16 5.82 -5.20 -0.03 2.13 16 19 C -0.11 -1.50 5.46 -104.63 -0.57 -2.07 16 20 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 21 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 23 C -0.11 -1.53 10.05 -39.59 -0.40 -1.92 16 24 C -0.09 -1.18 9.33 -39.59 -0.37 -1.55 16 25 C 0.50 7.11 7.55 -10.96 -0.08 7.03 16 26 O -0.53 -8.39 16.19 5.57 0.09 -8.30 16 27 C -0.14 -1.66 6.20 -27.85 -0.17 -1.83 16 28 C -0.11 -1.34 5.89 -27.95 -0.16 -1.51 16 29 H 0.11 1.98 3.14 -51.93 -0.16 1.82 16 30 H 0.14 2.24 5.19 -56.78 -0.29 1.94 16 31 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.10 1.16 7.36 -51.93 -0.38 0.78 16 34 H 0.13 1.62 7.57 -52.49 -0.40 1.22 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.12 1.64 7.08 -52.49 -0.37 1.27 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.10 1.10 8.14 -51.92 -0.42 0.68 16 42 H 0.12 1.49 7.47 -51.93 -0.39 1.10 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -29.52 358.83 -6.04 -35.56 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.54 Total: 8.76 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -4.14 Total: 6.54 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 1.28 Total: -48.49 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -4.23 Total: 13.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.52 -6.04 -35.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.353 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds