Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46891 * 141.90627 * 3 2 1 5 5 C 1.36719 * 119.99736 * 263.96250 * 4 3 2 6 6 H 1.07999 * 119.99937 * 140.94635 * 5 4 3 7 7 C 1.39127 * 119.99884 * 320.95152 * 5 4 3 8 8 N 1.31321 * 120.00272 * 164.16216 * 7 5 4 9 9 Si 1.86803 * 120.00277 * 344.15960 * 7 5 4 10 10 H 1.48499 * 109.47048 * 89.66849 * 9 7 5 11 11 H 1.48500 * 109.47309 * 209.67395 * 9 7 5 12 12 H 1.48507 * 109.46961 * 329.66794 * 9 7 5 13 13 C 1.34777 * 120.00844 * 83.96727 * 4 3 2 14 14 O 1.21717 * 120.00661 * 182.92604 * 13 4 3 15 15 C 1.46531 * 119.99259 * 2.92356 * 13 4 3 16 16 N 1.29821 * 119.55885 * 353.28213 * 15 13 4 17 17 N 1.39855 * 121.12167 * 180.38366 * 16 15 13 18 18 C 1.46497 * 119.79625 * 199.18469 * 17 16 15 19 19 C 1.50694 * 109.47469 * 269.98076 * 18 17 16 20 20 C 1.38235 * 120.00105 * 269.72566 * 19 18 17 21 21 C 1.38236 * 120.00107 * 179.76755 * 20 19 18 22 22 C 1.38239 * 119.99765 * 0.50251 * 21 20 19 23 23 C 1.38232 * 119.99826 * 359.75192 * 22 21 20 24 24 C 1.38231 * 120.00265 * 359.97438 * 23 22 21 25 25 C 1.34753 * 120.40922 * 19.16553 * 17 16 15 26 26 O 1.21261 * 120.11418 * 179.71508 * 25 17 16 27 27 C 1.50769 * 119.76593 * 359.74154 * 25 17 16 28 28 C 1.50549 * 119.55453 * 173.55754 * 15 13 4 29 29 H 1.08999 * 109.47411 * 21.89737 * 3 2 1 30 30 H 1.09003 * 109.46796 * 261.89680 * 3 2 1 31 31 H 0.96996 * 120.00652 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47263 * 29.98212 * 18 17 16 33 33 H 1.09002 * 109.47374 * 149.97826 * 18 17 16 34 34 H 1.08002 * 119.99988 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.00033 * 180.23097 * 21 20 19 36 36 H 1.07994 * 119.99695 * 179.72792 * 22 21 20 37 37 H 1.08002 * 119.99313 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.99629 * 179.97438 * 24 23 22 39 39 H 1.09007 * 109.50965 * 206.79172 * 27 25 17 40 40 H 1.08998 * 109.55661 * 86.66428 * 27 25 17 41 41 H 1.09008 * 109.44596 * 265.59289 * 28 15 13 42 42 H 1.09002 * 109.44879 * 25.49896 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0879 -0.8521 5 6 3.4412 0.8361 -2.1508 6 1 3.1983 1.5515 -2.9225 7 6 4.1053 -0.3418 -2.4781 8 7 4.1637 -0.7368 -3.7292 9 14 4.9142 -1.3614 -1.1381 10 1 3.9366 -2.3445 -0.6061 11 1 6.0838 -2.0818 -1.7022 12 1 5.3652 -0.4683 -0.0407 13 6 3.2043 2.3363 -0.3560 14 8 3.5586 3.2497 -1.0783 15 6 2.8955 2.5940 1.0530 16 7 2.3939 1.6446 1.7827 17 7 2.0795 1.8569 3.1288 18 6 1.9221 0.7118 4.0290 19 6 0.4837 0.2626 4.0237 20 6 -0.4109 0.7976 4.9316 21 6 -1.7314 0.3891 4.9236 22 6 -2.1552 -0.5621 4.0144 23 6 -1.2594 -1.1009 3.1099 24 6 0.0599 -0.6883 3.1142 25 6 1.9209 3.1081 3.6031 26 8 1.6433 3.2858 4.7701 27 6 2.0892 4.2864 2.6776 28 6 3.1583 3.9580 1.6335 29 1 2.9719 -0.9527 -0.3833 30 1 2.9713 0.1457 1.0175 31 1 4.6270 -1.5578 -3.9575 32 1 2.5593 -0.1058 3.6917 33 1 2.2083 1.0022 5.0399 34 1 -0.0787 1.5373 5.6451 35 1 -2.4311 0.8098 5.6306 36 1 -3.1859 -0.8844 4.0110 37 1 -1.5904 -1.8444 2.3998 38 1 0.7597 -1.1096 2.4078 39 1 2.3978 5.1596 3.2524 40 1 1.1437 4.4953 2.1773 41 1 4.1413 3.9686 2.1045 42 1 3.1296 4.7026 0.8379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072059642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 52.740664 kcal Electronic energy + Delta-G solvation = -30150.600566 eV Core-core repulsion = 26097.860796 eV Total energy + Delta-G solvation = -4052.739770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04133 -40.88218 -39.96533 -38.16988 -37.94359 -36.53468 -35.58499 -34.31182 -32.81224 -32.08268 -31.82251 -29.46662 -28.35295 -27.32396 -25.79684 -24.41901 -23.51056 -22.55044 -21.60969 -20.38986 -19.29321 -18.85808 -18.40660 -18.22313 -17.83026 -17.26146 -16.92974 -16.68932 -16.12965 -16.01692 -15.98729 -15.71015 -15.35916 -15.16124 -14.76202 -14.52182 -14.34686 -14.28984 -14.15799 -13.89715 -13.61491 -13.49759 -13.48649 -13.45570 -13.18883 -13.10206 -12.72397 -12.57299 -12.24933 -12.06338 -11.92195 -11.83983 -11.55641 -11.24866 -10.94500 -10.50702 -10.04750 -9.88066 -9.85298 -9.71569 -8.53149 -6.26414 -0.21214 0.21601 0.46633 1.21605 1.23781 1.31952 1.39614 1.49969 1.53229 1.84798 2.11603 2.18236 2.43330 2.82835 2.86558 2.96941 3.23971 3.50801 3.53063 3.76652 3.84029 3.95003 4.01372 4.05289 4.09007 4.14450 4.22770 4.29245 4.47571 4.52432 4.60769 4.71609 4.73514 4.76956 5.03098 5.06875 5.10499 5.13227 5.41213 5.51275 5.57055 5.61763 5.97622 6.05104 6.28800 6.51022 6.56773 6.72623 6.82535 7.05139 7.53370 8.61426 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.004942 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.220933 B = 5664.210077 C = 7064.919896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.224 3.776 3 C 0.166 3.834 4 N -0.438 5.438 5 C -0.340 4.340 6 H 0.061 0.939 7 C 0.022 3.978 8 N -0.895 5.895 9 Si 0.923 3.077 10 H -0.227 1.227 11 H -0.280 1.280 12 H -0.233 1.233 13 C 0.514 3.486 14 O -0.570 6.570 15 C 0.099 3.901 16 N -0.232 5.232 17 N -0.453 5.453 18 C 0.168 3.832 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.099 4.099 25 C 0.495 3.505 26 O -0.542 6.542 27 C -0.134 4.134 28 C -0.099 4.099 29 H 0.111 0.889 30 H 0.169 0.831 31 H 0.286 0.714 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.144 0.856 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 -0.087 19.135 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.095 4.095 3 C 0.040 3.960 4 N -0.159 5.159 5 C -0.468 4.468 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.530 5.530 9 Si 0.744 3.256 10 H -0.152 1.152 11 H -0.206 1.206 12 H -0.156 1.156 13 C 0.302 3.698 14 O -0.450 6.450 15 C -0.093 4.093 16 N -0.045 5.045 17 N -0.272 5.272 18 C 0.048 3.952 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.117 4.117 25 C 0.285 3.715 26 O -0.416 6.416 27 C -0.174 4.174 28 C -0.139 4.139 29 H 0.129 0.871 30 H 0.185 0.815 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.907 -0.507 19.372 19.991 hybrid contribution 0.722 0.201 -0.541 0.924 sum -4.185 -0.306 18.832 19.294 Atomic orbital electron populations 1.81053 1.13362 1.08594 1.09997 1.29573 0.95403 0.92773 0.91713 1.20306 0.81566 0.93697 1.00424 1.43478 1.54781 1.06880 1.10797 1.18729 1.38994 1.06929 0.82195 0.92124 1.26243 0.95186 0.97877 0.99016 1.69742 1.39473 1.23582 1.20219 0.86242 0.79508 0.79881 0.79983 1.15222 1.20579 1.15557 1.17756 0.82528 0.83821 0.85702 1.90736 1.51089 1.43595 1.59539 1.24970 0.94319 0.95946 0.94038 1.75019 1.11205 1.26174 0.92091 1.49311 1.65736 1.07042 1.05100 1.20620 0.93289 0.87548 0.93768 1.20161 0.96528 0.98071 0.97267 1.21277 0.93746 0.98972 0.98613 1.21409 0.96017 0.97857 0.99680 1.21446 1.00348 0.96717 0.95147 1.21293 0.93727 1.00696 0.99034 1.21118 0.96523 0.96920 0.97177 1.21666 0.75436 0.85326 0.89084 1.90680 1.47424 1.85332 1.18194 1.21888 1.01854 0.97061 0.96588 1.20938 1.00979 0.92632 0.99339 0.87144 0.81457 0.90360 0.86666 0.87046 0.85679 0.84158 0.84219 0.85931 0.86613 0.83817 0.87620 0.85962 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.56 18.23 20.01 0.36 -17.20 16 2 C 0.22 8.27 13.38 89.44 1.20 9.47 16 3 C 0.17 5.81 4.02 84.58 0.34 6.15 16 4 N -0.44 -18.94 2.16 -650.16 -1.40 -20.34 16 5 C -0.34 -17.82 9.40 84.15 0.79 -17.03 16 6 H 0.06 3.76 7.91 -2.91 -0.02 3.73 16 7 C 0.02 1.10 5.37 84.98 0.46 1.56 16 8 N -0.89 -48.36 13.95 21.69 0.30 -48.05 16 9 Si 0.92 34.27 24.88 68.60 1.71 35.98 16 10 H -0.23 -7.11 6.51 99.48 0.65 -6.46 16 11 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 12 H -0.23 -7.84 7.11 99.48 0.71 -7.14 16 13 C 0.51 21.09 7.51 86.40 0.65 21.74 16 14 O -0.57 -27.23 16.08 -4.40 -0.07 -27.30 16 15 C 0.10 3.03 6.67 44.97 0.30 3.33 16 16 N -0.23 -6.60 6.04 -43.58 -0.26 -6.86 16 17 N -0.45 -11.45 3.45 -466.77 -1.61 -13.06 16 18 C 0.17 3.65 5.82 85.63 0.50 4.15 16 19 C -0.12 -2.91 5.46 -19.87 -0.11 -3.02 16 20 C -0.11 -2.56 9.70 22.27 0.22 -2.35 16 21 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 22 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 23 C -0.13 -3.23 10.05 22.27 0.22 -3.00 16 24 C -0.10 -2.54 9.33 22.27 0.21 -2.34 16 25 C 0.50 12.50 7.55 87.68 0.66 13.16 16 26 O -0.54 -15.50 16.19 -2.97 -0.05 -15.54 16 27 C -0.13 -2.70 6.20 29.87 0.19 -2.51 16 28 C -0.10 -2.24 5.89 29.80 0.18 -2.07 16 29 H 0.11 3.82 3.14 -2.39 -0.01 3.81 16 30 H 0.17 4.86 5.19 -8.73 -0.05 4.81 16 31 H 0.29 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.12 2.03 8.09 -2.39 -0.02 2.01 16 33 H 0.11 2.22 7.36 -2.39 -0.02 2.20 16 34 H 0.13 2.95 7.57 -2.91 -0.02 2.93 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.12 2.97 7.08 -2.91 -0.02 2.95 16 39 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.12 2.72 7.47 -2.39 -0.02 2.71 16 Total: -1.00 -67.26 358.83 6.21 -61.05 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.99 Total: 29.11 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 6.24 Total: 22.22 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -2.61 Total: -105.52 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.12 Total: -42.84 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 1.71 Total: 35.98 kcal Total: -67.26 6.21 -61.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.791 kcal (2) G-P(sol) polarization free energy of solvation -67.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds