Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99906 * 2 1 4 4 C 1.53005 * 109.47154 * 184.91009 * 3 2 1 5 5 N 1.46905 * 109.46897 * 65.29989 * 4 3 2 6 6 C 1.46902 * 110.99564 * 199.54801 * 5 4 3 7 7 C 1.50700 * 109.47238 * 66.05009 * 6 5 4 8 8 H 1.08005 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00172 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00084 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99861 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47392 * 89.99934 * 11 9 7 13 13 H 1.48501 * 109.46932 * 209.99874 * 11 9 7 14 14 H 1.48502 * 109.46968 * 330.00044 * 11 9 7 15 15 C 1.46893 * 110.99746 * 75.59814 * 5 4 3 16 16 C 1.50710 * 109.46941 * 199.97482 * 15 5 4 17 17 O 1.21281 * 119.99709 * 5.46342 * 16 15 5 18 18 N 1.34775 * 119.99849 * 185.46738 * 16 15 5 19 19 C 1.39929 * 119.99472 * 184.67924 * 18 16 15 20 20 C 1.38904 * 120.06098 * 214.80754 * 19 18 16 21 21 C 1.38097 * 119.95139 * 180.23353 * 20 19 18 22 22 C 1.38282 * 120.08388 * 359.51812 * 21 20 19 23 23 C 1.50703 * 119.93236 * 180.21320 * 22 21 20 24 24 C 1.38380 * 120.12890 * 0.46471 * 22 21 20 25 25 Cl 1.73594 * 119.97608 * 179.77028 * 24 22 21 26 26 C 1.38246 * 120.04498 * 359.78670 * 24 22 21 27 27 H 1.09004 * 109.47076 * 304.91125 * 1 2 3 28 28 H 1.08995 * 109.47769 * 64.91216 * 1 2 3 29 29 H 1.09003 * 109.47291 * 184.91657 * 1 2 3 30 30 H 1.08999 * 109.47207 * 64.90892 * 3 2 1 31 31 H 1.08998 * 109.47154 * 304.90758 * 3 2 1 32 32 H 1.08998 * 109.47102 * 305.30039 * 4 3 2 33 33 H 1.08995 * 109.46827 * 185.29764 * 4 3 2 34 34 H 1.09000 * 109.46860 * 186.05082 * 6 5 4 35 35 H 1.09001 * 109.47103 * 306.04467 * 6 5 4 36 36 H 0.96997 * 119.99688 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47803 * 79.97453 * 15 5 4 38 38 H 1.08998 * 109.47146 * 319.96982 * 15 5 4 39 39 H 0.96998 * 120.00514 * 4.67690 * 18 16 15 40 40 H 1.08003 * 120.02087 * 359.96284 * 20 19 18 41 41 H 1.08002 * 119.95149 * 179.72753 * 21 20 19 42 42 H 1.09006 * 109.46482 * 270.25136 * 23 22 21 43 43 H 1.09001 * 109.47536 * 30.25170 * 23 22 21 44 44 H 1.08997 * 109.46839 * 150.25583 * 23 22 21 45 45 H 1.08001 * 120.04405 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1869 -0.1235 5 7 3.8724 0.6161 -1.4332 6 6 5.2324 0.0607 -1.4266 7 6 5.2875 -1.1222 -0.4946 8 1 4.4009 -1.4305 0.0398 9 6 6.4696 -1.8111 -0.3240 10 7 6.5177 -2.8432 0.4897 11 14 8.0027 -1.2785 -1.2488 12 1 8.7519 -0.2870 -0.4357 13 1 8.8634 -2.4617 -1.5031 14 1 7.6117 -0.6634 -2.5426 15 6 3.7167 1.6144 -2.4994 16 6 3.5889 0.9147 -3.8281 17 8 3.5245 -0.2956 -3.8722 18 7 3.5464 1.6339 -4.9671 19 6 3.3296 0.9925 -6.1917 20 6 3.9510 1.4611 -7.3422 21 6 3.7317 0.8294 -8.5504 22 6 2.9020 -0.2751 -8.6146 23 6 2.6688 -0.9648 -9.9340 24 6 2.2814 -0.7450 -7.4705 25 17 1.2360 -2.1282 -7.5566 26 6 2.4932 -0.1135 -6.2590 27 1 -0.3633 0.5882 0.8428 28 1 -0.3634 0.4357 -0.9306 29 1 -0.3634 -1.0239 0.0881 30 1 1.7598 1.8147 0.9307 31 1 1.6207 1.8766 -0.8427 32 1 3.9097 0.5378 0.6659 33 1 3.9809 2.1750 -0.0291 34 1 5.4997 -0.2578 -2.4342 35 1 5.9345 0.8228 -1.0883 36 1 7.3493 -3.3280 0.6094 37 1 4.5888 2.2681 -2.5154 38 1 2.8213 2.2077 -2.3137 39 1 3.6660 2.5960 -4.9380 40 1 4.6019 2.3216 -7.2925 41 1 4.2114 1.1964 -9.4457 42 1 1.8112 -0.5136 -10.4332 43 1 3.5532 -0.8564 -10.5620 44 1 2.4733 -2.0230 -9.7612 45 1 2.0085 -0.4801 -5.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072688695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -43.053475 kcal Electronic energy + Delta-G solvation = -27428.306632 eV Core-core repulsion = 23472.520411 eV Total energy + Delta-G solvation = -3955.786222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50785 -38.88103 -37.68090 -36.55404 -36.01147 -34.79513 -32.44161 -31.82458 -30.86639 -29.78369 -28.79619 -26.70216 -25.94580 -24.82238 -23.19147 -22.05888 -21.83024 -20.62515 -19.74959 -17.94990 -17.06106 -16.79750 -16.01370 -15.80635 -15.72000 -15.61142 -14.86048 -14.81421 -14.65770 -14.29217 -14.09830 -14.00308 -13.74148 -13.49676 -13.20902 -12.68612 -12.48597 -12.45270 -12.33713 -12.05240 -12.01201 -11.91875 -11.64499 -11.40204 -11.29542 -11.25557 -10.87863 -10.67574 -10.60382 -10.11369 -10.02489 -9.78918 -9.53499 -9.24668 -9.08904 -8.85064 -8.47308 -8.09537 -7.42661 -5.93699 -3.89222 1.00692 1.16982 2.08684 2.83697 3.02658 3.32256 3.41262 3.43870 3.56942 4.25275 4.50552 4.58357 4.63505 4.76296 4.90425 4.94414 5.13720 5.26482 5.29033 5.37622 5.43221 5.44585 5.47352 5.52920 5.54823 5.67270 5.70935 5.71973 5.75532 5.78335 5.94163 6.01164 6.03330 6.16845 6.29194 6.31535 6.57523 6.81440 6.84268 6.94869 7.37910 7.61599 7.71819 7.86826 8.01508 8.40693 8.75358 9.20466 9.67880 11.19745 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.003535 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.055715 B = 7918.276721 C = 9123.131629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.359 6.359 3 C 0.070 3.930 4 C 0.059 3.941 5 N -0.499 5.499 6 C 0.165 3.835 7 C -0.499 4.499 8 H 0.087 0.913 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.035 3.965 16 C 0.505 3.495 17 O -0.469 6.469 18 N -0.687 5.687 19 C 0.167 3.833 20 C -0.144 4.144 21 C -0.091 4.091 22 C -0.101 4.101 23 C -0.115 4.115 24 C -0.015 4.015 25 Cl -0.065 7.065 26 C -0.110 4.110 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.033 0.967 35 H -0.020 1.020 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.408 0.592 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.155 14.219 -16.224 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C -0.008 4.008 4 C -0.069 4.069 5 N -0.223 5.223 6 C 0.039 3.961 7 C -0.537 4.537 8 H 0.105 0.895 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.698 3.302 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.097 4.097 16 C 0.292 3.708 17 O -0.337 6.337 18 N -0.335 5.335 19 C 0.072 3.928 20 C -0.164 4.164 21 C -0.110 4.110 22 C -0.103 4.103 23 C -0.171 4.171 24 C -0.042 4.042 25 Cl -0.037 7.037 26 C -0.131 4.131 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.051 0.949 35 H -0.002 1.002 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.244 0.756 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.379 12.476 -16.154 22.898 hybrid contribution 1.284 1.524 -0.284 2.013 sum -9.096 14.000 -16.437 23.429 Atomic orbital electron populations 1.22666 0.82804 1.02254 0.98769 1.88183 1.17801 1.26778 1.94938 1.22589 0.94794 0.85138 0.98231 1.22133 0.92705 0.98387 0.93705 1.61584 1.30251 1.29522 1.00929 1.20248 0.82624 0.94789 0.98392 1.21016 0.97720 1.10981 1.23989 0.89510 1.24857 0.98378 0.94898 0.95082 1.69893 1.26865 1.19953 1.37256 0.86940 0.83942 0.78364 0.80936 1.20482 1.21155 1.19446 1.21962 1.02023 0.94744 0.90983 1.21135 0.76102 0.88470 0.85134 1.90811 1.43355 1.13428 1.86102 1.43754 1.73700 1.11186 1.04825 1.17544 0.94970 0.94653 0.85661 1.20983 1.00853 1.02622 0.91982 1.20715 0.97996 0.94724 0.97522 1.19701 0.98656 0.97147 0.94769 1.20813 1.02251 1.00850 0.93219 1.20579 0.97399 0.91856 0.94365 1.98359 1.65101 1.41670 1.98520 1.21063 0.98271 0.96253 0.97466 0.95021 0.94937 0.90036 0.93851 0.94605 0.87433 0.94320 0.94887 1.00213 0.92826 0.92607 0.88671 0.75620 0.85202 0.84944 0.90996 0.91304 0.90922 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -6.79 10.65 -35.23 -0.38 -7.16 16 3 C 0.07 1.09 6.12 37.16 0.23 1.32 16 4 C 0.06 1.07 5.17 -3.82 -0.02 1.05 16 5 N -0.50 -10.39 3.90 -237.51 -0.93 -11.32 16 6 C 0.17 4.11 3.43 -4.98 -0.02 4.09 16 7 C -0.50 -14.71 8.79 -34.44 -0.30 -15.02 16 8 H 0.09 2.83 7.55 -52.48 -0.40 2.43 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -28.53 13.96 55.43 0.77 -27.76 16 11 Si 0.87 22.34 27.47 -169.99 -4.67 17.67 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 15 C 0.03 0.54 5.30 -4.97 -0.03 0.52 16 16 C 0.51 8.55 7.12 -10.98 -0.08 8.47 16 17 O -0.47 -10.42 13.29 5.56 0.07 -10.34 16 18 N -0.69 -8.56 5.34 -9.86 -0.05 -8.61 16 19 C 0.17 2.22 6.25 -83.69 -0.52 1.70 16 20 C -0.14 -1.52 9.97 -39.39 -0.39 -1.91 16 21 C -0.09 -0.90 9.69 -39.62 -0.38 -1.28 16 22 C -0.10 -1.14 5.89 -104.55 -0.62 -1.75 16 23 C -0.11 -0.99 9.61 36.01 0.35 -0.65 16 24 C -0.01 -0.20 6.31 -39.53 -0.25 -0.45 16 25 Cl -0.07 -0.86 27.28 -51.86 -1.41 -2.27 16 26 C -0.11 -1.65 8.43 -39.36 -0.33 -1.99 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.49 6.64 -51.93 -0.34 0.14 16 32 H 0.11 2.32 6.58 -51.93 -0.34 1.98 16 33 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 34 H 0.03 0.89 5.96 -51.93 -0.31 0.58 16 35 H -0.02 -0.47 7.55 -51.93 -0.39 -0.86 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16 38 H 0.10 1.17 6.43 -51.93 -0.33 0.83 16 39 H 0.41 3.35 8.82 -40.82 -0.36 2.99 16 40 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 44 H 0.07 0.67 6.89 -51.93 -0.36 0.31 16 45 H 0.15 2.56 6.51 -52.49 -0.34 2.21 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -36.90 383.36 -8.72 -45.62 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.55 Total: 0.78 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.35 Total: -2.38 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.21 Total: -47.69 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.30 Total: -17.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.41 Total: -2.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.90 -8.72 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072688695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.563 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds