Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99906 * 2 1 4 4 C 1.53005 * 109.47154 * 184.91009 * 3 2 1 5 5 N 1.46905 * 109.46897 * 65.29989 * 4 3 2 6 6 C 1.46902 * 110.99564 * 199.54801 * 5 4 3 7 7 C 1.50700 * 109.47238 * 66.05009 * 6 5 4 8 8 H 1.08005 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00172 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00084 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99861 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47392 * 89.99934 * 11 9 7 13 13 H 1.48501 * 109.46932 * 209.99874 * 11 9 7 14 14 H 1.48502 * 109.46968 * 330.00044 * 11 9 7 15 15 C 1.46893 * 110.99746 * 75.59814 * 5 4 3 16 16 C 1.50710 * 109.46941 * 199.97482 * 15 5 4 17 17 O 1.21281 * 119.99709 * 5.46342 * 16 15 5 18 18 N 1.34775 * 119.99849 * 185.46738 * 16 15 5 19 19 C 1.39929 * 119.99472 * 184.67924 * 18 16 15 20 20 C 1.38904 * 120.06098 * 214.80754 * 19 18 16 21 21 C 1.38097 * 119.95139 * 180.23353 * 20 19 18 22 22 C 1.38282 * 120.08388 * 359.51812 * 21 20 19 23 23 C 1.50703 * 119.93236 * 180.21320 * 22 21 20 24 24 C 1.38380 * 120.12890 * 0.46471 * 22 21 20 25 25 Cl 1.73594 * 119.97608 * 179.77028 * 24 22 21 26 26 C 1.38246 * 120.04498 * 359.78670 * 24 22 21 27 27 H 1.09004 * 109.47076 * 304.91125 * 1 2 3 28 28 H 1.08995 * 109.47769 * 64.91216 * 1 2 3 29 29 H 1.09003 * 109.47291 * 184.91657 * 1 2 3 30 30 H 1.08999 * 109.47207 * 64.90892 * 3 2 1 31 31 H 1.08998 * 109.47154 * 304.90758 * 3 2 1 32 32 H 1.08998 * 109.47102 * 305.30039 * 4 3 2 33 33 H 1.08995 * 109.46827 * 185.29764 * 4 3 2 34 34 H 1.09000 * 109.46860 * 186.05082 * 6 5 4 35 35 H 1.09001 * 109.47103 * 306.04467 * 6 5 4 36 36 H 0.96997 * 119.99688 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47803 * 79.97453 * 15 5 4 38 38 H 1.08998 * 109.47146 * 319.96982 * 15 5 4 39 39 H 0.96998 * 120.00514 * 4.67690 * 18 16 15 40 40 H 1.08003 * 120.02087 * 359.96284 * 20 19 18 41 41 H 1.08002 * 119.95149 * 179.72753 * 21 20 19 42 42 H 1.09006 * 109.46482 * 270.25136 * 23 22 21 43 43 H 1.09001 * 109.47536 * 30.25170 * 23 22 21 44 44 H 1.08997 * 109.46839 * 150.25583 * 23 22 21 45 45 H 1.08001 * 120.04405 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5306 1.1869 -0.1235 5 7 3.8724 0.6161 -1.4332 6 6 5.2324 0.0607 -1.4266 7 6 5.2875 -1.1222 -0.4946 8 1 4.4009 -1.4305 0.0398 9 6 6.4696 -1.8111 -0.3240 10 7 6.5177 -2.8432 0.4897 11 14 8.0027 -1.2785 -1.2488 12 1 8.7519 -0.2870 -0.4357 13 1 8.8634 -2.4617 -1.5031 14 1 7.6117 -0.6634 -2.5426 15 6 3.7167 1.6144 -2.4994 16 6 3.5889 0.9147 -3.8281 17 8 3.5245 -0.2956 -3.8722 18 7 3.5464 1.6339 -4.9671 19 6 3.3296 0.9925 -6.1917 20 6 3.9510 1.4611 -7.3422 21 6 3.7317 0.8294 -8.5504 22 6 2.9020 -0.2751 -8.6146 23 6 2.6688 -0.9648 -9.9340 24 6 2.2814 -0.7450 -7.4705 25 17 1.2360 -2.1282 -7.5566 26 6 2.4932 -0.1135 -6.2590 27 1 -0.3633 0.5882 0.8428 28 1 -0.3634 0.4357 -0.9306 29 1 -0.3634 -1.0239 0.0881 30 1 1.7598 1.8147 0.9307 31 1 1.6207 1.8766 -0.8427 32 1 3.9097 0.5378 0.6659 33 1 3.9809 2.1750 -0.0291 34 1 5.4997 -0.2578 -2.4342 35 1 5.9345 0.8228 -1.0883 36 1 7.3493 -3.3280 0.6094 37 1 4.5888 2.2681 -2.5154 38 1 2.8213 2.2077 -2.3137 39 1 3.6660 2.5960 -4.9380 40 1 4.6019 2.3216 -7.2925 41 1 4.2114 1.1964 -9.4457 42 1 1.8112 -0.5136 -10.4332 43 1 3.5532 -0.8564 -10.5620 44 1 2.4733 -2.0230 -9.7612 45 1 2.0085 -0.4801 -5.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072688695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -70.900962 kcal Electronic energy + Delta-G solvation = -27429.514190 eV Core-core repulsion = 23472.520411 eV Total energy + Delta-G solvation = -3956.993779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61324 -39.99973 -38.98317 -37.67126 -37.36174 -35.93428 -34.64554 -32.79453 -31.76672 -31.22968 -30.40510 -27.95046 -27.04103 -26.22315 -24.14459 -23.79656 -22.89925 -21.85792 -21.12786 -19.15198 -18.81196 -18.22541 -17.31605 -17.21655 -16.79630 -16.51528 -16.27703 -16.14866 -15.89255 -15.76950 -15.31328 -15.09213 -14.89845 -14.85950 -14.48206 -14.38338 -13.98403 -13.52896 -13.40995 -13.28499 -13.17239 -12.88297 -12.85277 -12.72551 -12.62368 -12.52738 -12.27502 -12.20999 -11.86537 -11.85322 -11.57966 -11.40675 -11.14422 -10.79538 -10.74125 -10.42670 -9.81142 -9.05553 -8.93829 -8.25017 -6.26165 0.08888 0.23653 1.11626 1.28092 1.34139 1.43465 1.64095 1.96790 2.34476 2.64995 3.05558 3.08662 3.21876 3.73395 3.84579 3.94052 4.10652 4.12160 4.26584 4.32266 4.32730 4.39487 4.44464 4.51070 4.57629 4.60051 4.66931 4.73560 4.75754 4.82254 4.84052 4.86733 5.02215 5.05987 5.17638 5.19375 5.26825 5.41754 5.46047 5.60047 5.90220 5.97503 6.28964 6.46185 6.55133 6.71275 6.81249 7.26558 7.35259 8.92681 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.003535 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.055715 B = 7918.276721 C = 9123.131629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.412 6.412 3 C 0.071 3.929 4 C 0.059 3.941 5 N -0.530 5.530 6 C 0.183 3.817 7 C -0.504 4.504 8 H 0.033 0.967 9 C 0.003 3.997 10 N -0.952 5.952 11 Si 0.947 3.053 12 H -0.254 1.254 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.036 3.964 16 C 0.503 3.497 17 O -0.536 6.536 18 N -0.663 5.663 19 C 0.144 3.856 20 C -0.130 4.130 21 C -0.084 4.084 22 C -0.101 4.101 23 C -0.114 4.114 24 C -0.036 4.036 25 Cl -0.076 7.076 26 C -0.137 4.137 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.014 0.986 35 H -0.004 1.004 36 H 0.265 0.735 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.431 0.569 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 18.438 -19.059 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C -0.005 4.005 4 C -0.069 4.069 5 N -0.254 5.254 6 C 0.056 3.944 7 C -0.543 4.543 8 H 0.052 0.948 9 C -0.193 4.193 10 N -0.593 5.593 11 Si 0.770 3.230 12 H -0.179 1.179 13 H -0.211 1.211 14 H -0.184 1.184 15 C -0.095 4.095 16 C 0.291 3.709 17 O -0.410 6.410 18 N -0.313 5.313 19 C 0.049 3.951 20 C -0.151 4.151 21 C -0.103 4.103 22 C -0.103 4.103 23 C -0.171 4.171 24 C -0.063 4.063 25 Cl -0.047 7.047 26 C -0.158 4.158 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.014 0.986 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.152 0.848 39 H 0.271 0.729 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.274 16.782 -19.009 27.000 hybrid contribution 0.789 0.214 0.561 0.992 sum -8.484 16.996 -18.449 26.480 Atomic orbital electron populations 1.22810 0.80626 1.02767 1.00526 1.88122 1.20483 1.29203 1.95377 1.22696 0.92708 0.84362 1.00761 1.22142 0.94926 0.98768 0.91029 1.61290 1.27732 1.32925 1.03490 1.19840 0.85640 0.93418 0.95524 1.21256 0.95954 1.12815 1.24247 0.94832 1.25854 1.02446 0.94859 0.96123 1.70074 1.28098 1.21741 1.39401 0.85728 0.78989 0.78423 0.79812 1.17873 1.21059 1.18441 1.22112 1.05186 0.93774 0.88450 1.21470 0.75023 0.87826 0.86608 1.90802 1.46793 1.16291 1.87064 1.43426 1.72171 1.12063 1.03638 1.17760 0.95758 0.94837 0.86721 1.21383 0.99837 1.02995 0.90838 1.21226 0.96765 0.93511 0.98752 1.20118 0.97829 0.97463 0.94855 1.20885 1.03953 0.99995 0.92242 1.20778 0.98460 0.92094 0.94987 1.98343 1.65534 1.42287 1.98539 1.20934 1.00002 0.97999 0.96847 0.92366 0.93685 0.90535 0.91034 0.91880 0.92326 0.90503 0.96779 0.98632 0.92656 0.89288 0.84793 0.72913 0.81610 0.80939 0.89518 0.88987 0.92031 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -16.00 10.65 -148.98 -1.59 -17.59 16 3 C 0.07 2.13 6.12 71.98 0.44 2.57 16 4 C 0.06 2.11 5.17 86.30 0.45 2.56 16 5 N -0.53 -22.09 3.90 -905.35 -3.53 -25.62 16 6 C 0.18 9.17 3.43 85.56 0.29 9.47 16 7 C -0.50 -31.32 8.79 25.60 0.23 -31.10 16 8 H 0.03 2.37 7.55 -2.91 -0.02 2.35 16 9 C 0.00 0.21 5.47 84.65 0.46 0.68 16 10 N -0.95 -63.18 13.96 21.45 0.30 -62.88 16 11 Si 0.95 46.77 27.47 68.60 1.88 48.65 16 12 H -0.25 -11.49 7.11 99.48 0.71 -10.79 16 13 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 14 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 15 C 0.04 1.03 5.30 85.56 0.45 1.48 16 16 C 0.50 16.67 7.12 87.66 0.62 17.30 16 17 O -0.54 -24.86 13.29 -3.03 -0.04 -24.90 16 18 N -0.66 -15.17 5.34 -303.50 -1.62 -16.79 16 19 C 0.14 3.63 6.25 38.15 0.24 3.87 16 20 C -0.13 -2.26 9.97 22.40 0.22 -2.04 16 21 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 22 C -0.10 -2.07 5.89 -19.82 -0.12 -2.18 16 23 C -0.11 -1.69 9.61 71.24 0.68 -1.01 16 24 C -0.04 -0.99 6.31 22.31 0.14 -0.85 16 25 Cl -0.08 -2.08 27.28 -2.72 -0.07 -2.16 16 26 C -0.14 -4.26 8.43 22.41 0.19 -4.07 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.51 6.64 -2.39 -0.02 1.50 16 32 H 0.06 2.67 6.58 -2.39 -0.02 2.65 16 33 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 34 H 0.01 0.76 5.96 -2.39 -0.01 0.75 16 35 H 0.00 -0.18 7.55 -2.39 -0.02 -0.20 16 36 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 37 H 0.09 2.02 8.00 -2.39 -0.02 2.00 16 38 H 0.13 2.75 6.43 -2.39 -0.02 2.74 16 39 H 0.43 5.45 8.82 -92.71 -0.82 4.63 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.09 1.04 8.14 -2.38 -0.02 1.03 16 43 H 0.09 0.94 8.09 -2.39 -0.02 0.93 16 44 H 0.06 1.07 6.89 -2.39 -0.02 1.05 16 45 H 0.11 4.22 6.51 -2.91 -0.02 4.20 16 Total: -1.00 -90.22 383.36 1.24 -88.99 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.14 Total: 14.70 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 5.77 Total: -2.39 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -4.86 Total: -105.30 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.63 Total: -42.49 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.16 kcal Total: -90.22 1.24 -88.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072688695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.088 kcal (2) G-P(sol) polarization free energy of solvation -90.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds