Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47417 * 270.00080 * 3 2 1 5 5 H 1.48500 * 109.47117 * 30.00145 * 3 2 1 6 6 H 1.48500 * 109.47400 * 150.00040 * 3 2 1 7 7 C 1.37886 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99642 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99702 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46880 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.46839 * 180.02562 * 10 9 7 12 12 O 1.42107 * 110.54316 * 68.37654 * 11 10 9 13 13 O 1.42098 * 110.54720 * 291.62489 * 11 10 9 14 14 N 1.65607 * 104.44677 * 179.97438 * 11 10 9 15 15 C 1.46495 * 119.99981 * 65.00326 * 14 11 10 16 16 C 1.50704 * 109.47401 * 164.99837 * 15 14 11 17 17 C 1.38830 * 120.35230 * 89.99699 * 16 15 14 18 18 C 1.38375 * 118.48323 * 180.30216 * 17 16 15 19 19 C 1.38922 * 119.10973 * 359.47636 * 18 17 16 20 20 O 1.35677 * 119.68825 * 180.27659 * 19 18 17 21 21 C 1.42896 * 117.00575 * 180.25438 * 20 19 18 22 22 C 1.52994 * 109.47298 * 180.02562 * 21 20 19 23 23 C 1.53001 * 117.49949 * 243.74596 * 22 21 20 24 24 C 1.53001 * 117.49851 * 175.08875 * 22 21 20 25 25 N 1.32253 * 120.63240 * 0.53369 * 19 18 17 26 26 C 1.31969 * 121.64330 * 359.72291 * 25 19 18 27 27 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46734 * 60.00119 * 9 7 2 29 29 H 1.09002 * 109.47359 * 299.99823 * 9 7 2 30 30 H 1.08994 * 109.46666 * 60.00221 * 10 9 7 31 31 H 1.09002 * 109.47090 * 300.00122 * 10 9 7 32 32 H 0.97004 * 119.99993 * 244.99595 * 14 11 10 33 33 H 1.09001 * 109.47287 * 44.99734 * 15 14 11 34 34 H 1.08998 * 109.46969 * 285.00030 * 15 14 11 35 35 H 1.08002 * 120.75704 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.44930 * 179.72741 * 18 17 16 37 37 H 1.09003 * 109.47089 * 300.00420 * 21 20 19 38 38 H 1.09006 * 109.46658 * 59.99782 * 21 20 19 39 39 H 1.08998 * 115.55437 * 29.41637 * 22 21 20 40 40 H 1.09004 * 117.49978 * 0.02562 * 23 22 21 41 41 H 1.09006 * 117.49937 * 145.01880 * 23 22 21 42 42 H 1.09006 * 117.49680 * 214.97943 * 24 22 21 43 43 H 1.08996 * 117.50044 * 0.02562 * 24 22 21 44 44 H 1.08003 * 119.58076 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 16 5.8354 -2.6367 -0.0009 12 8 6.3341 -2.1462 1.2361 13 8 6.3342 -2.1464 -1.2379 14 7 6.2486 -4.2404 -0.0001 15 6 5.9123 -5.0841 -1.1495 16 6 6.6970 -6.3686 -1.0766 17 6 6.1771 -7.4716 -0.4129 18 6 6.9334 -8.6294 -0.3643 19 6 8.1750 -8.6523 -0.9871 20 8 8.9238 -9.7831 -0.9515 21 6 10.1936 -9.7413 -1.6057 22 6 10.8868 -11.0975 -1.4608 23 6 12.1968 -11.1405 -0.6715 24 6 12.2150 -11.2939 -2.1944 25 7 8.6363 -7.5807 -1.6099 26 6 7.9406 -6.4608 -1.6686 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6805 0.8889 29 1 3.8746 -0.6801 -0.8911 30 1 3.6578 -3.1506 -0.8907 31 1 3.6585 -3.1504 0.8892 32 1 6.7135 -4.6211 0.7615 33 1 6.1609 -4.5582 -2.0713 34 1 4.8457 -5.3085 -1.1357 35 1 5.2066 -7.4256 0.0586 36 1 6.5616 -9.5048 0.1473 37 1 10.0504 -9.5179 -2.6629 38 1 10.8111 -8.9666 -1.1510 39 1 10.2233 -11.9587 -1.3819 40 1 12.5646 -10.2026 -0.2551 41 1 12.3953 -12.0301 -0.0737 42 1 12.4254 -12.2844 -2.5979 43 1 12.5952 -10.4568 -2.7799 44 1 8.3497 -5.6055 -2.1859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111335852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -56.044052 kcal Electronic energy + Delta-G solvation = -25897.112125 eV Core-core repulsion = 21942.806296 eV Total energy + Delta-G solvation = -3954.305829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01391 -38.91986 -37.28873 -36.74918 -35.66393 -35.41711 -33.97153 -32.71222 -31.50438 -31.01317 -28.08684 -25.99771 -25.75024 -23.98628 -22.90773 -22.25637 -21.32861 -21.13069 -19.10753 -18.85587 -17.73621 -17.43957 -17.09950 -16.57568 -16.39529 -15.87795 -15.55686 -15.16443 -14.98215 -14.77704 -14.42686 -14.29883 -13.91723 -13.80784 -13.60826 -13.46175 -13.28733 -12.82685 -12.42834 -12.10380 -11.92014 -11.89917 -11.75707 -11.68086 -11.64223 -11.52781 -11.27293 -11.21655 -11.01311 -10.47269 -10.46306 -10.24424 -10.17886 -10.01872 -9.81494 -9.52191 -9.21261 -8.77525 -8.67981 -6.18428 -4.19837 0.53477 0.84383 0.94114 2.53454 2.98510 3.25374 3.28058 3.32963 3.36939 3.48320 3.94297 4.09039 4.22502 4.33720 4.34318 4.36255 4.44704 4.54851 4.63385 4.66601 4.75471 4.87878 5.05110 5.13035 5.13400 5.14902 5.20368 5.22406 5.37128 5.45329 5.47529 5.50061 5.58551 5.59075 5.66551 5.77069 5.95981 6.10284 6.25529 6.79503 6.89362 6.90236 6.97451 7.50088 7.52920 8.34305 8.82487 9.41259 10.93895 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.001829 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.020542 B =15301.711804 C =15732.790511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.582 4.582 11 S 2.591 3.409 12 O -0.966 6.966 13 O -0.965 6.965 14 N -1.124 6.124 15 C 0.165 3.835 16 C -0.185 4.185 17 C -0.023 4.023 18 C -0.191 4.191 19 C 0.324 3.676 20 O -0.304 6.304 21 C 0.103 3.897 22 C -0.161 4.161 23 C -0.177 4.177 24 C -0.168 4.168 25 N -0.542 5.542 26 C 0.160 3.840 27 H 0.266 0.734 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.414 0.586 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.690 -22.890 -3.001 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.716 4.716 11 S 2.688 3.312 12 O -0.956 6.956 13 O -0.955 6.955 14 N -0.881 5.881 15 C 0.038 3.962 16 C -0.189 4.189 17 C -0.049 4.049 18 C -0.212 4.212 19 C 0.145 3.855 20 O -0.211 6.211 21 C 0.028 3.972 22 C -0.179 4.179 23 C -0.213 4.213 24 C -0.205 4.205 25 N -0.265 5.265 26 C 0.004 3.996 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 20.869 -22.298 -3.452 30.735 hybrid contribution -0.776 0.402 0.614 1.068 sum 20.092 -21.896 -2.837 29.853 Atomic orbital electron populations 1.69882 1.06217 1.27273 1.49944 1.24989 0.94818 0.99180 0.94112 0.86920 0.80693 0.83681 0.79121 1.19673 1.20774 1.18622 1.20851 0.87839 0.94899 1.52350 0.90414 1.19415 0.99893 0.87486 0.97906 1.30292 1.21143 1.09202 1.10924 1.05589 0.79054 0.72325 0.74197 1.93568 1.79178 1.77680 1.45171 1.93548 1.78402 1.77924 1.45652 1.55857 1.75081 1.29880 1.27292 1.20037 0.98304 0.88200 0.89633 1.20680 0.97717 0.96724 1.03776 1.21431 0.99241 0.90717 0.93554 1.21075 0.93791 1.00827 1.05506 1.19869 0.89101 0.85384 0.91123 1.86202 1.30935 1.31438 1.72556 1.22128 0.81773 0.95798 0.97503 1.22168 0.90759 0.98378 1.06587 1.23126 1.00217 1.03759 0.94244 1.23002 0.98871 1.03561 0.95110 1.67405 1.37093 1.00516 1.21515 1.22450 0.89820 0.93795 0.93585 0.92373 0.94927 0.95313 0.85684 0.85460 0.75267 0.88994 0.90352 0.83513 0.83924 0.91044 0.91324 0.86668 0.88462 0.88399 0.88138 0.88360 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 2 C 0.07 2.04 5.47 -17.81 -0.10 1.94 16 3 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.22 9.66 -34.44 -0.33 -14.56 16 8 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 10 C -0.58 -9.91 6.01 37.16 0.22 -9.68 16 11 S 2.59 40.51 5.46 -107.50 -0.59 39.92 16 12 O -0.97 -18.15 18.08 -57.54 -1.04 -19.19 16 13 O -0.97 -17.62 17.50 -57.54 -1.01 -18.62 16 14 N -1.12 -12.38 5.88 -11.66 -0.07 -12.45 16 15 C 0.16 1.53 6.28 -5.19 -0.03 1.50 16 16 C -0.19 -1.66 5.29 -104.47 -0.55 -2.21 16 17 C -0.02 -0.19 9.85 -39.31 -0.39 -0.57 16 18 C -0.19 -1.66 10.04 -39.28 -0.39 -2.05 16 19 C 0.32 3.37 7.49 -17.12 -0.13 3.24 16 20 O -0.30 -3.06 10.12 -18.73 -0.19 -3.25 16 21 C 0.10 0.85 5.59 37.15 0.21 1.06 16 22 C -0.16 -1.06 6.05 -90.62 -0.55 -1.60 16 23 C -0.18 -0.99 10.18 -26.69 -0.27 -1.26 16 24 C -0.17 -0.86 10.25 -26.69 -0.27 -1.13 16 25 N -0.54 -5.85 9.22 -13.33 -0.12 -5.97 16 26 C 0.16 1.56 10.85 -17.57 -0.19 1.37 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 29 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 30 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 31 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16 32 H 0.41 4.01 8.61 -34.48 -0.30 3.71 16 33 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 34 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.58 7.84 -51.93 -0.41 0.18 16 39 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -35.46 387.92 -10.47 -45.93 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.52 Total: 1.42 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -2.89 Total: -24.25 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.58 Total: -44.37 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.24 Total: -41.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: 40.51 SS G_CDS: -0.59 Total: 39.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.46 -10.47 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111335852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.109 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds