Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48502 * 109.47195 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47056 * 299.99613 * 3 2 1 6 6 H 1.48495 * 109.47546 * 59.99776 * 3 2 1 7 7 C 1.37875 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99981 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.34973 * 125.97429 * 124.99966 * 10 9 7 12 12 C 1.35230 * 107.86748 * 180.02562 * 11 10 9 13 13 C 1.40432 * 107.86588 * 359.97438 * 12 11 10 14 14 N 1.40029 * 125.97558 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00140 * 0.02562 * 14 13 12 16 16 O 1.21582 * 119.99974 * 359.97438 * 15 14 13 17 17 C 1.47545 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.29036 * 125.86427 * 359.97283 * 17 15 14 19 19 O 1.41387 * 112.88428 * 180.34556 * 18 17 15 20 20 C 1.44201 * 107.59230 * 342.50459 * 19 18 17 21 21 H 1.09005 * 110.97671 * 267.25202 * 20 19 18 22 22 C 1.50702 * 110.97671 * 143.51089 * 20 19 18 23 23 C 1.38234 * 120.00271 * 146.45139 * 22 20 19 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 20 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 326.43267 * 22 20 19 28 28 C 1.51687 * 125.86177 * 179.97438 * 17 15 14 29 29 N 1.31244 * 108.04942 * 0.26460 * 13 12 11 30 30 H 0.97002 * 120.00272 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47271 * 59.99772 * 9 7 2 32 32 H 1.08997 * 109.47426 * 300.00114 * 9 7 2 33 33 H 1.07999 * 126.06784 * 0.05740 * 11 10 9 34 34 H 1.08002 * 126.06338 * 180.02562 * 12 11 10 35 35 H 0.97005 * 120.00394 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.99769 * 359.97438 * 23 22 20 37 37 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 38 38 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 39 39 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 40 40 H 1.07997 * 120.00489 * 0.02562 * 27 22 20 41 41 H 1.09009 * 110.79491 * 77.10623 * 28 17 15 42 42 H 1.08993 * 110.79491 * 313.63097 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.2421 -4.6216 0.8984 12 6 3.2609 -5.4419 0.5552 13 6 3.8692 -4.9151 -0.5958 14 7 4.9646 -5.4656 -1.2725 15 6 5.5295 -6.6048 -0.8258 16 8 5.0884 -7.1543 0.1649 17 6 6.6834 -7.1851 -1.5392 18 7 7.2403 -6.6995 -2.5970 19 8 8.3233 -7.4833 -3.0574 20 6 8.7256 -8.3485 -1.9762 21 1 9.5210 -7.8924 -1.3867 22 6 9.1487 -9.6988 -2.4947 23 6 10.1557 -10.3994 -1.8576 24 6 10.5434 -11.6381 -2.3330 25 6 9.9237 -12.1766 -3.4451 26 6 8.9160 -11.4765 -4.0816 27 6 8.5294 -10.2369 -3.6073 28 6 7.4186 -8.4550 -1.1549 29 7 3.2353 -3.8134 -0.9227 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5574 -0.8880 32 1 0.6247 -2.5563 0.8919 33 1 1.5773 -4.7511 1.7396 34 1 3.5542 -6.3428 1.0737 35 1 5.3169 -5.0270 -2.0628 36 1 10.6396 -9.9788 -0.9884 37 1 11.3299 -12.1857 -1.8350 38 1 10.2296 -13.1425 -3.8192 39 1 8.4321 -11.8969 -4.9508 40 1 7.7427 -9.6895 -4.1052 41 1 6.8482 -9.3363 -1.4484 42 1 7.6331 -8.4696 -0.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117712872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = 105.681742 kcal Electronic energy + Delta-G solvation = -27046.972224 eV Core-core repulsion = 22996.528151 eV Total energy + Delta-G solvation = -4050.444073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25522 -40.66556 -39.50511 -38.89045 -35.06897 -33.83195 -33.27312 -32.93914 -31.35029 -31.01640 -29.50406 -29.33471 -26.95844 -25.03505 -24.43084 -23.05490 -22.83450 -21.55546 -21.26906 -20.17453 -19.49853 -17.86890 -17.64532 -16.86022 -16.63129 -16.35913 -16.33517 -15.55357 -15.41085 -15.34997 -14.91421 -14.65457 -14.27889 -14.03385 -13.88308 -13.82425 -13.68145 -13.27506 -12.91400 -12.88486 -12.44614 -12.37929 -12.29046 -11.87779 -11.69422 -11.51836 -11.32165 -11.11567 -10.92497 -10.59523 -10.36602 -10.29728 -10.09268 -9.88999 -9.54660 -9.37611 -9.25030 -8.66974 -8.26590 -7.61341 -6.27679 -4.32838 0.54517 0.78130 0.95003 2.18828 2.42370 2.63029 2.87031 3.21067 3.26969 3.28876 3.35075 3.55396 3.59903 3.80683 4.02436 4.09485 4.25895 4.31534 4.37021 4.57029 4.62170 4.69663 4.92682 5.02890 5.07615 5.08164 5.23325 5.26566 5.42436 5.46045 5.58888 5.66966 5.97867 6.05565 6.06322 6.06920 6.30371 6.38470 6.50356 6.66808 6.77889 6.99916 7.19083 7.38413 7.66358 7.81172 7.88487 7.95007 8.50896 8.76042 9.33253 10.81182 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027392 B = 0.001787 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.962553 B =15668.456520 C =16150.082632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.256 3.744 10 N -0.314 5.314 11 C 0.054 3.946 12 C -0.286 4.286 13 C 0.251 3.749 14 N -0.607 5.607 15 C 0.594 3.406 16 O -0.492 6.492 17 C 0.060 3.940 18 N -0.240 5.240 19 O -0.174 6.174 20 C 0.085 3.915 21 H 0.104 0.896 22 C -0.091 4.091 23 C -0.102 4.102 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.094 4.094 28 C -0.123 4.123 29 N -0.294 5.294 30 H 0.267 0.733 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.420 0.580 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.245 -23.653 -3.291 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.096 5.096 11 C -0.096 4.096 12 C -0.317 4.317 13 C -0.002 4.002 14 N -0.255 5.255 15 C 0.376 3.624 16 O -0.362 6.362 17 C -0.135 4.135 18 N 0.017 4.983 19 O -0.196 6.196 20 C 0.026 3.974 21 H 0.122 0.878 22 C -0.092 4.092 23 C -0.121 4.121 24 C -0.138 4.138 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.112 4.112 28 C -0.163 4.163 29 N -0.126 5.126 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.179 0.821 35 H 0.257 0.743 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.666 -22.048 -4.309 28.579 hybrid contribution 0.710 -0.107 0.686 0.993 sum 18.376 -22.154 -3.622 29.010 Atomic orbital electron populations 1.69921 1.06045 1.27594 1.49696 1.24942 0.94990 0.99586 0.94521 0.86269 0.80077 0.82406 0.77743 1.19538 1.20659 1.20744 1.21287 0.94061 0.89315 1.52162 0.91185 1.19810 0.85565 0.81238 0.99463 1.49170 1.22745 1.19692 1.17973 1.22587 1.00180 0.90110 0.96709 1.21508 1.02198 1.06501 1.01473 1.18972 0.91449 0.94756 0.94997 1.42169 1.29260 1.23927 1.30148 1.16662 0.81306 0.80522 0.83911 1.90805 1.61097 1.60158 1.24144 1.25833 0.96348 0.95859 0.95465 1.78506 0.97450 1.12646 1.09700 1.91324 1.43504 1.51303 1.33497 1.22560 0.96906 0.89587 0.88303 0.87844 1.19449 0.98022 0.94257 0.97512 1.20948 0.96165 0.95161 0.99788 1.21131 1.00154 0.95634 0.96909 1.21258 0.96167 0.99933 0.95802 1.21200 0.97606 0.94797 1.00144 1.21049 0.99409 0.95311 0.95447 1.22896 0.93184 0.95870 1.04311 1.77396 1.03277 1.15671 1.16219 0.92332 0.93519 0.92348 0.81189 0.82145 0.74325 0.85574 0.85632 0.85833 0.85662 0.85510 0.86865 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.55 9.23 -34.44 -0.32 -14.87 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.37 6.26 -5.19 -0.03 6.34 16 10 N -0.31 -7.09 3.67 -62.56 -0.23 -7.31 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.35 9.60 -39.83 -0.38 -5.73 16 13 C 0.25 4.89 8.10 -154.49 -1.25 3.64 16 14 N -0.61 -9.52 5.44 -12.09 -0.07 -9.58 16 15 C 0.59 8.32 7.79 -12.47 -0.10 8.22 16 16 O -0.49 -7.76 14.08 5.29 0.07 -7.68 16 17 C 0.06 0.67 7.28 -79.49 -0.58 0.10 16 18 N -0.24 -2.87 12.15 35.27 0.43 -2.44 16 19 O -0.17 -1.96 11.43 -11.37 -0.13 -2.09 16 20 C 0.08 0.70 4.01 -26.97 -0.11 0.59 16 21 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 22 C -0.09 -0.71 5.00 -104.62 -0.52 -1.24 16 23 C -0.10 -0.66 9.70 -39.59 -0.38 -1.04 16 24 C -0.12 -0.71 10.05 -39.59 -0.40 -1.11 16 25 C -0.11 -0.68 10.05 -39.58 -0.40 -1.08 16 26 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.09 -0.76 9.38 -39.58 -0.37 -1.13 16 28 C -0.12 -1.02 6.44 -26.49 -0.17 -1.19 16 29 N -0.29 -6.66 12.42 31.42 0.39 -6.27 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 34 H 0.16 2.83 5.91 -52.49 -0.31 2.51 16 35 H 0.42 5.92 8.50 -40.82 -0.35 5.57 16 36 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 1.06 7.65 -52.49 -0.40 0.65 16 41 H 0.11 0.88 7.90 -51.92 -0.41 0.47 16 42 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -31.88 371.96 -8.73 -40.60 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.81 Total: 4.50 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -5.71 Total: -7.26 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 1.26 Total: -49.88 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.06 Total: -9.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.88 -8.73 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117712872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.286 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds