Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47064 * 299.99977 * 3 2 1 6 6 H 1.48500 * 109.47081 * 60.00109 * 3 2 1 7 7 C 1.38955 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00102 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99689 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46874 * 179.97438 * 12 10 9 14 14 C 1.47005 * 111.00031 * 287.69566 * 13 12 10 15 15 C 1.53100 * 109.25899 * 177.60819 * 14 13 12 16 16 O 1.43016 * 109.25828 * 56.84952 * 15 14 13 17 17 C 1.43020 * 113.77681 * 301.35390 * 16 15 14 18 18 C 1.47015 * 110.99839 * 164.06033 * 13 12 10 19 19 H 1.09009 * 109.50657 * 62.41626 * 18 13 12 20 20 C 1.53002 * 109.51090 * 302.32984 * 18 13 12 21 21 C 1.52998 * 109.46960 * 297.77881 * 20 18 13 22 22 H 1.09006 * 109.47037 * 305.55098 * 21 20 18 23 23 O 1.42906 * 109.47328 * 65.55030 * 21 20 18 24 24 C 1.50697 * 109.47195 * 185.55372 * 21 20 18 25 25 C 1.33388 * 125.20511 * 100.00100 * 24 21 20 26 26 C 1.38424 * 114.92349 * 179.97438 * 25 24 21 27 27 C 1.33392 * 114.91576 * 359.97438 * 26 25 24 28 28 S 1.75874 * 109.59656 * 359.75913 * 27 26 25 29 29 H 0.97002 * 120.00175 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47433 * 59.99709 * 12 10 9 32 32 H 1.09005 * 109.47118 * 299.99452 * 12 10 9 33 33 H 1.08994 * 109.51233 * 297.54390 * 14 13 12 34 34 H 1.09007 * 109.50865 * 57.63548 * 14 13 12 35 35 H 1.09003 * 109.51085 * 176.78393 * 15 14 13 36 36 H 1.09008 * 109.50562 * 296.91801 * 15 14 13 37 37 H 1.08998 * 109.47273 * 298.69267 * 17 16 15 38 38 H 1.09002 * 109.54662 * 178.55636 * 17 16 15 39 39 H 1.08999 * 109.47107 * 177.77909 * 20 18 13 40 40 H 1.09000 * 109.47144 * 57.77890 * 20 18 13 41 41 H 0.96696 * 113.99764 * 59.99979 * 23 21 20 42 42 H 1.08002 * 122.53561 * 359.95414 * 25 24 21 43 43 H 1.07993 * 122.54293 * 180.02562 * 26 25 24 44 44 H 1.08001 * 125.19645 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0014 14 6 2.8568 -6.1088 -1.3065 15 6 3.8835 -7.2428 -1.2451 16 8 3.2292 -8.4505 -0.8465 17 6 2.5771 -8.3610 0.4232 18 6 1.5379 -7.2375 0.3789 19 1 0.7704 -7.4805 -0.3561 20 6 0.8937 -7.0828 1.7581 21 6 1.9788 -6.7987 2.7987 22 1 2.7405 -7.5770 2.7511 23 8 2.5772 -5.5294 2.5286 24 6 1.3634 -6.7815 4.1742 25 6 1.4032 -7.7893 5.0471 26 6 0.7673 -7.5431 6.2517 27 6 0.2116 -6.3351 6.3572 28 16 0.4904 -5.4263 4.8775 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 0.0024 31 1 0.6167 -4.9209 -0.8875 32 1 0.6174 -4.9205 0.8925 33 1 2.1110 -6.3341 -2.0688 34 1 3.3602 -5.1744 -1.5547 35 1 4.3335 -7.3802 -2.2284 36 1 4.6589 -6.9929 -0.5209 37 1 3.3146 -8.1443 1.1960 38 1 2.0820 -9.3061 0.6463 39 1 0.3708 -8.0025 2.0201 40 1 0.1848 -6.2551 1.7371 41 1 1.9564 -4.7885 2.5542 42 1 1.8941 -8.7266 4.8302 43 1 0.7251 -8.2734 7.0462 44 1 -0.3236 -5.9694 7.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121696960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -71.055161 kcal Electronic energy + Delta-G solvation = -28596.288337 eV Core-core repulsion = 24641.331577 eV Total energy + Delta-G solvation = -3954.956760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10493 -38.26418 -37.91931 -36.73659 -35.14009 -33.82332 -32.62356 -31.20430 -30.44908 -29.00438 -27.53656 -25.49476 -24.96581 -23.73388 -23.02590 -21.92604 -19.73667 -19.51726 -19.06758 -17.84023 -17.82040 -16.71082 -16.20710 -15.82529 -15.75415 -15.59562 -14.98487 -14.72846 -14.61364 -14.32219 -14.07765 -13.90540 -13.70762 -13.28885 -13.22301 -12.91119 -12.72222 -12.48809 -12.20737 -12.02073 -11.85193 -11.57904 -11.47818 -11.38912 -11.16601 -11.04301 -10.81157 -10.56083 -10.35912 -10.32463 -10.19266 -9.89334 -9.46091 -9.43206 -8.74361 -8.53295 -8.37230 -7.92529 -7.76821 -6.38867 -3.79119 0.90315 1.55010 1.94181 2.63162 3.17999 3.28637 3.35712 3.81400 3.94774 3.97494 4.24261 4.42872 4.64785 4.73754 4.88564 4.95205 5.06884 5.13489 5.25399 5.26247 5.29781 5.37136 5.38936 5.43761 5.49172 5.56956 5.61331 5.74631 5.80386 5.86552 5.88317 5.95907 6.09549 6.18483 6.18557 6.26414 6.31280 6.37698 7.19428 7.25409 7.38874 7.58407 7.90139 8.10213 8.65859 9.22420 9.58444 10.11091 10.79088 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.004337 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.014611 B = 6454.014211 C = 8996.834439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.294 4.294 8 H 0.103 0.897 9 N -0.570 5.570 10 C 0.446 3.554 11 O -0.564 6.564 12 C 0.041 3.959 13 N -0.485 5.485 14 C 0.022 3.978 15 C 0.067 3.933 16 O -0.391 6.391 17 C 0.069 3.931 18 C 0.052 3.948 19 H 0.047 0.953 20 C -0.146 4.146 21 C 0.180 3.820 22 H 0.113 0.887 23 O -0.510 6.510 24 C -0.206 4.206 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.220 4.220 28 S 0.118 5.882 29 H 0.270 0.730 30 H 0.390 0.610 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.367 0.633 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -16.974 7.168 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.424 4.424 8 H 0.121 0.879 9 N -0.207 5.207 10 C 0.231 3.769 11 O -0.447 6.447 12 C -0.090 4.090 13 N -0.210 5.210 14 C -0.106 4.106 15 C -0.010 4.010 16 O -0.309 6.309 17 C -0.008 4.008 18 C -0.057 4.057 19 H 0.065 0.935 20 C -0.184 4.184 21 C 0.118 3.882 22 H 0.131 0.869 23 O -0.313 6.313 24 C -0.324 4.324 25 C -0.171 4.171 26 C -0.167 4.167 27 C -0.356 4.356 28 S 0.382 5.618 29 H 0.079 0.921 30 H 0.223 0.777 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.214 0.786 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.041 -15.780 6.866 17.240 hybrid contribution -1.314 -0.090 0.304 1.352 sum -2.355 -15.870 7.170 17.573 Atomic orbital electron populations 1.69617 1.05898 1.27902 1.51133 1.25219 0.95583 0.99589 0.97558 0.85843 0.79764 0.81375 0.77634 1.19246 1.20886 1.20830 1.19723 0.93327 0.82176 1.47162 0.87904 1.41891 1.09056 1.04598 1.65186 1.19683 0.88486 0.84260 0.84481 1.90530 1.13420 1.86750 1.53967 1.21968 0.94046 0.91863 1.01105 1.61807 1.29280 1.01169 1.28767 1.22836 0.97302 1.01175 0.89276 1.22668 0.94456 0.83359 1.00490 1.87915 1.70961 1.35343 1.36694 1.22738 0.94433 0.97276 0.86389 1.22235 0.95771 0.91758 0.95962 0.93531 1.22459 0.98341 1.03197 0.94418 1.20340 0.93772 0.89382 0.84692 0.86932 1.86882 1.37537 1.14140 1.92770 1.25825 1.06040 0.98018 1.02479 1.20045 1.03439 1.00152 0.93449 1.20143 1.00628 0.97280 0.98631 1.25650 1.08759 0.98719 1.02477 1.84593 1.51639 1.16848 1.08762 0.92050 0.77722 0.93737 0.89774 0.95290 0.87730 0.88925 0.91845 0.91814 0.89064 0.90195 0.90576 0.78579 0.84428 0.84531 0.82057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.29 -8.02 9.68 -14.93 -0.14 -8.16 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -13.91 5.29 -10.97 -0.06 -13.97 16 10 C 0.45 10.01 7.29 -10.99 -0.08 9.93 16 11 O -0.56 -14.58 14.43 5.55 0.08 -14.50 16 12 C 0.04 0.71 4.27 -4.98 -0.02 0.69 16 13 N -0.49 -7.70 2.66 -227.77 -0.60 -8.31 16 14 C 0.02 0.35 5.30 -3.71 -0.02 0.33 16 15 C 0.07 0.94 7.01 37.21 0.26 1.20 16 16 O -0.39 -5.47 10.82 -35.23 -0.38 -5.85 16 17 C 0.07 0.82 5.98 37.21 0.22 1.04 16 18 C 0.05 0.66 2.28 -67.59 -0.15 0.51 16 19 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 20 C -0.15 -1.62 4.47 -26.73 -0.12 -1.74 16 21 C 0.18 2.23 3.15 -27.89 -0.09 2.14 16 22 H 0.11 1.32 6.00 -51.93 -0.31 1.01 16 23 O -0.51 -8.40 11.08 -35.23 -0.39 -8.79 16 24 C -0.21 -2.43 5.48 -36.00 -0.20 -2.63 16 25 C -0.14 -1.46 10.04 -41.21 -0.41 -1.88 16 26 C -0.14 -1.33 10.18 -41.21 -0.42 -1.75 16 27 C -0.22 -2.26 11.23 29.04 0.33 -1.93 16 28 S 0.12 1.42 22.63 -107.50 -2.43 -1.01 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 31 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.08 1.29 4.76 -51.93 -0.25 1.04 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.97 6.42 -51.93 -0.33 1.64 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.06 0.79 6.10 -51.93 -0.32 0.47 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.89 5.94 -51.93 -0.31 0.58 16 41 H 0.37 6.18 7.02 45.56 0.32 6.50 16 42 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -31.13 363.39 -8.81 -39.94 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -5.25 Total: 16.40 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.94 Total: -1.78 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.06 Total: -45.83 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.69 Total: -29.14 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.43 Total: -1.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.13 -8.81 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121696960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.114 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds