Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47064 * 299.99977 * 3 2 1 6 6 H 1.48500 * 109.47081 * 60.00109 * 3 2 1 7 7 C 1.38955 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00102 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99689 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46874 * 179.97438 * 12 10 9 14 14 C 1.47005 * 111.00031 * 287.69566 * 13 12 10 15 15 C 1.53100 * 109.25899 * 177.60819 * 14 13 12 16 16 O 1.43016 * 109.25828 * 56.84952 * 15 14 13 17 17 C 1.43020 * 113.77681 * 301.35390 * 16 15 14 18 18 C 1.47015 * 110.99839 * 164.06033 * 13 12 10 19 19 H 1.09009 * 109.50657 * 62.41626 * 18 13 12 20 20 C 1.53002 * 109.51090 * 302.32984 * 18 13 12 21 21 C 1.52998 * 109.46960 * 297.77881 * 20 18 13 22 22 H 1.09006 * 109.47037 * 305.55098 * 21 20 18 23 23 O 1.42906 * 109.47328 * 65.55030 * 21 20 18 24 24 C 1.50697 * 109.47195 * 185.55372 * 21 20 18 25 25 C 1.33388 * 125.20511 * 100.00100 * 24 21 20 26 26 C 1.38424 * 114.92349 * 179.97438 * 25 24 21 27 27 C 1.33392 * 114.91576 * 359.97438 * 26 25 24 28 28 S 1.75874 * 109.59656 * 359.75913 * 27 26 25 29 29 H 0.97002 * 120.00175 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99914 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47433 * 59.99709 * 12 10 9 32 32 H 1.09005 * 109.47118 * 299.99452 * 12 10 9 33 33 H 1.08994 * 109.51233 * 297.54390 * 14 13 12 34 34 H 1.09007 * 109.50865 * 57.63548 * 14 13 12 35 35 H 1.09003 * 109.51085 * 176.78393 * 15 14 13 36 36 H 1.09008 * 109.50562 * 296.91801 * 15 14 13 37 37 H 1.08998 * 109.47273 * 298.69267 * 17 16 15 38 38 H 1.09002 * 109.54662 * 178.55636 * 17 16 15 39 39 H 1.08999 * 109.47107 * 177.77909 * 20 18 13 40 40 H 1.09000 * 109.47144 * 57.77890 * 20 18 13 41 41 H 0.96696 * 113.99764 * 59.99979 * 23 21 20 42 42 H 1.08002 * 122.53561 * 359.95414 * 25 24 21 43 43 H 1.07993 * 122.54293 * 180.02562 * 26 25 24 44 44 H 1.08001 * 125.19645 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0014 14 6 2.8568 -6.1088 -1.3065 15 6 3.8835 -7.2428 -1.2451 16 8 3.2292 -8.4505 -0.8465 17 6 2.5771 -8.3610 0.4232 18 6 1.5379 -7.2375 0.3789 19 1 0.7704 -7.4805 -0.3561 20 6 0.8937 -7.0828 1.7581 21 6 1.9788 -6.7987 2.7987 22 1 2.7405 -7.5770 2.7511 23 8 2.5772 -5.5294 2.5286 24 6 1.3634 -6.7815 4.1742 25 6 1.4032 -7.7893 5.0471 26 6 0.7673 -7.5431 6.2517 27 6 0.2116 -6.3351 6.3572 28 16 0.4904 -5.4263 4.8775 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 0.0024 31 1 0.6167 -4.9209 -0.8875 32 1 0.6174 -4.9205 0.8925 33 1 2.1110 -6.3341 -2.0688 34 1 3.3602 -5.1744 -1.5547 35 1 4.3335 -7.3802 -2.2284 36 1 4.6589 -6.9929 -0.5209 37 1 3.3146 -8.1443 1.1960 38 1 2.0820 -9.3061 0.6463 39 1 0.3708 -8.0025 2.0201 40 1 0.1848 -6.2551 1.7371 41 1 1.9564 -4.7885 2.5542 42 1 1.8941 -8.7266 4.8302 43 1 0.7251 -8.2734 7.0462 44 1 -0.3236 -5.9694 7.2210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121696960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -93.888854 kcal Electronic energy + Delta-G solvation = -28597.278480 eV Core-core repulsion = 24641.331577 eV Total energy + Delta-G solvation = -3955.946903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28634 -39.69202 -39.14156 -37.73197 -36.45299 -35.71904 -33.76038 -33.19968 -31.40694 -30.33262 -28.55909 -27.14797 -25.88824 -25.28918 -23.96444 -23.00046 -21.16595 -20.55442 -20.31555 -19.79915 -18.77544 -18.01054 -17.36486 -17.26195 -16.84179 -16.63798 -16.49891 -15.96026 -15.80627 -15.74064 -15.50899 -15.20933 -15.13677 -14.58185 -14.41740 -13.94257 -13.81657 -13.55089 -13.49188 -13.42652 -13.04863 -12.97251 -12.84600 -12.58719 -12.44857 -12.35481 -12.23144 -12.11068 -11.88377 -11.52874 -11.47958 -11.37909 -10.99533 -10.56554 -10.15446 -9.92818 -9.57639 -9.42103 -9.07066 -8.41857 -5.88938 0.08508 0.70288 1.12908 1.37514 1.42531 1.56075 1.85948 2.13399 2.29879 2.65122 2.94293 3.24465 3.40767 3.48627 3.62600 3.75487 3.95005 4.07382 4.15210 4.23761 4.25719 4.28827 4.31608 4.42951 4.53083 4.53389 4.55287 4.67369 4.70898 4.76180 4.83911 4.89301 4.95171 5.04724 5.09136 5.24491 5.38123 5.46085 5.61221 5.90169 6.07746 6.14523 6.25237 6.67346 6.71569 7.20289 7.64405 8.21650 8.75919 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.004337 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.014611 B = 6454.014211 C = 8996.834439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.987 3.013 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.323 4.323 8 H 0.077 0.923 9 N -0.580 5.580 10 C 0.450 3.550 11 O -0.600 6.600 12 C 0.056 3.944 13 N -0.498 5.498 14 C 0.023 3.977 15 C 0.075 3.925 16 O -0.395 6.395 17 C 0.066 3.934 18 C 0.053 3.947 19 H 0.054 0.946 20 C -0.137 4.137 21 C 0.180 3.820 22 H 0.121 0.879 23 O -0.536 6.536 24 C -0.218 4.218 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.216 4.216 28 S 0.060 5.940 29 H 0.275 0.725 30 H 0.393 0.607 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.360 0.640 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -19.126 8.115 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.212 4.212 3 Si 0.811 3.189 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.453 4.453 8 H 0.095 0.905 9 N -0.218 5.218 10 C 0.237 3.763 11 O -0.484 6.484 12 C -0.075 4.075 13 N -0.224 5.224 14 C -0.105 4.105 15 C -0.002 4.002 16 O -0.314 6.314 17 C -0.010 4.010 18 C -0.055 4.055 19 H 0.072 0.928 20 C -0.175 4.175 21 C 0.119 3.881 22 H 0.139 0.861 23 O -0.340 6.340 24 C -0.335 4.335 25 C -0.164 4.164 26 C -0.168 4.168 27 C -0.351 4.351 28 S 0.323 5.677 29 H 0.084 0.916 30 H 0.226 0.774 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.206 0.794 42 H 0.180 0.820 43 H 0.183 0.817 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.911 -17.964 7.817 19.684 hybrid contribution -1.028 0.460 0.080 1.129 sum -2.938 -17.504 7.897 19.426 Atomic orbital electron populations 1.69677 1.06709 1.28903 1.51155 1.25921 0.96437 1.02085 0.96751 0.84955 0.78094 0.77663 0.78156 1.19937 1.19826 1.19824 1.19628 0.92526 0.83973 1.49133 0.90475 1.41933 1.09089 1.04665 1.66125 1.20595 0.88292 0.85449 0.81983 1.90504 1.15403 1.87583 1.54945 1.21777 0.93702 0.89482 1.02557 1.61749 1.29642 1.02285 1.28707 1.22751 0.97806 1.00263 0.89722 1.22581 0.93450 0.82887 1.01237 1.87914 1.71015 1.34802 1.37669 1.22953 0.94150 0.98495 0.85434 1.22355 0.96105 0.90179 0.96877 0.92787 1.22407 0.97722 1.04355 0.93018 1.20464 0.94317 0.87749 0.85548 0.86142 1.86855 1.38508 1.15448 1.93164 1.25696 1.07142 0.98119 1.02593 1.20409 1.02397 1.00503 0.93077 1.20501 0.99699 0.97527 0.99075 1.25928 1.08831 0.98516 1.01872 1.84814 1.53001 1.18783 1.11117 0.91562 0.77369 0.92585 0.87729 0.94576 0.91321 0.86969 0.93268 0.92296 0.85597 0.87177 0.91302 0.79391 0.82041 0.81688 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.46 29.55 68.60 2.03 45.48 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.32 -18.25 9.68 84.04 0.81 -17.44 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.58 -29.36 5.29 -306.99 -1.62 -30.98 16 10 C 0.45 20.93 7.29 87.66 0.64 21.57 16 11 O -0.60 -32.50 14.43 -3.07 -0.04 -32.54 16 12 C 0.06 1.92 4.27 85.55 0.37 2.28 16 13 N -0.50 -15.67 2.66 -874.53 -2.32 -17.99 16 14 C 0.02 0.74 5.30 86.32 0.46 1.19 16 15 C 0.08 2.07 7.01 72.02 0.50 2.58 16 16 O -0.40 -10.23 10.82 -148.98 -1.61 -11.84 16 17 C 0.07 1.41 5.98 72.02 0.43 1.84 16 18 C 0.05 1.24 2.28 44.93 0.10 1.35 16 19 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 20 C -0.14 -2.75 4.47 30.59 0.14 -2.61 16 21 C 0.18 4.23 3.15 29.85 0.09 4.33 16 22 H 0.12 2.59 6.00 -2.38 -0.01 2.58 16 23 O -0.54 -17.95 11.08 -148.98 -1.65 -19.60 16 24 C -0.22 -4.83 5.48 24.59 0.13 -4.70 16 25 C -0.13 -2.40 10.04 21.22 0.21 -2.18 16 26 C -0.14 -2.28 10.18 21.22 0.22 -2.06 16 27 C -0.22 -4.03 11.23 66.72 0.75 -3.28 16 28 S 0.06 1.43 22.63 -56.49 -1.28 0.15 16 29 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.39 19.08 7.90 -92.70 -0.73 18.35 16 31 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 32 H 0.10 3.18 4.76 -2.38 -0.01 3.17 16 33 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 2.71 6.42 -2.38 -0.02 2.69 16 35 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 37 H 0.06 1.33 6.10 -2.39 -0.01 1.31 16 38 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.51 5.94 -2.39 -0.01 1.49 16 41 H 0.36 12.65 7.02 -74.06 -0.52 12.13 16 42 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -69.08 363.39 -1.09 -70.17 By element: Atomic # 1 Polarization: 44.30 SS G_CDS: -0.20 Total: 44.11 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 5.32 Total: 2.65 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -3.66 Total: -98.57 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -3.31 Total: -63.99 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.28 Total: 0.15 kcal Total: -69.08 -1.09 -70.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121696960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.716 kcal (2) G-P(sol) polarization free energy of solvation -69.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds