Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38616 * 119.82219 * 2 1 4 4 C 1.37949 * 120.42306 * 180.02562 * 3 2 1 5 5 C 1.38956 * 120.06578 * 0.02562 * 4 3 2 6 6 N 1.38878 * 120.17886 * 180.27161 * 5 4 3 7 7 S 1.65600 * 119.99639 * 35.69379 * 6 5 4 8 8 C 1.81407 * 104.44801 * 59.49301 * 7 6 5 9 9 O 1.42098 * 104.27482 * 175.56176 * 7 6 5 10 10 O 1.42100 * 104.28069 * 303.42220 * 7 6 5 11 11 C 1.40347 * 119.64762 * 0.02562 * 5 4 3 12 12 C 1.47436 * 120.20902 * 180.02562 * 11 5 4 13 13 O 1.21603 * 119.99953 * 359.97438 * 12 11 5 14 14 N 1.34774 * 120.00288 * 179.97438 * 12 11 5 15 15 C 1.46495 * 120.00077 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47296 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47658 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47674 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99549 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00171 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99580 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47010 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46740 * 120.00269 * 22 20 18 25 25 H 1.48502 * 109.46794 * 240.00109 * 22 20 18 26 26 C 1.37748 * 119.82829 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47278 * 269.97709 * 1 2 3 28 28 H 1.08992 * 109.47016 * 29.98135 * 1 2 3 29 29 H 1.09000 * 109.46684 * 149.97984 * 1 2 3 30 30 H 1.08003 * 119.78688 * 0.03983 * 3 2 1 31 31 H 1.08004 * 119.96829 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00207 * 215.69209 * 6 5 4 33 33 H 1.08995 * 109.47217 * 59.99928 * 8 7 6 34 34 H 1.09001 * 109.46670 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47224 * 299.99511 * 8 7 6 36 36 H 0.97006 * 119.99836 * 0.02562 * 14 12 11 37 37 H 1.09006 * 109.47220 * 299.99792 * 15 14 12 38 38 H 1.09000 * 109.47519 * 60.00119 * 15 14 12 39 39 H 1.08999 * 109.47313 * 300.00149 * 16 15 14 40 40 H 1.09003 * 109.47357 * 59.99643 * 16 15 14 41 41 H 1.08997 * 109.47417 * 300.00114 * 17 16 15 42 42 H 1.09010 * 109.46602 * 59.99932 * 17 16 15 43 43 H 0.97008 * 119.99806 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.03259 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2026 0.0000 4 6 3.5758 1.2171 -0.0005 5 6 4.2845 0.0218 -0.0016 6 7 5.6733 0.0336 0.0035 7 16 6.4881 1.2028 0.8469 8 6 5.9375 0.9903 2.5623 9 8 7.8560 0.8417 0.7140 10 8 5.9980 2.4255 0.3138 11 6 3.5895 -1.1974 -0.0027 12 6 4.3290 -2.4729 -0.0033 13 8 5.5450 -2.4707 -0.0033 14 7 3.6573 -3.6414 -0.0038 15 6 4.3922 -4.9087 -0.0049 16 6 3.4002 -6.0735 -0.0060 17 6 4.1676 -7.3971 -0.0078 18 6 3.1904 -8.5444 -0.0082 19 1 2.1282 -8.3490 -0.0077 20 6 3.6525 -9.8434 -0.0093 21 7 4.9459 -10.0812 -0.0094 22 14 2.4412 -11.2655 -0.0105 23 1 1.0544 -10.7344 -0.0095 24 1 2.6532 -12.0953 -1.2237 25 1 2.6531 -12.0972 1.2014 26 6 2.1922 -1.1950 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6500 2.1342 0.0007 31 1 4.1055 2.1583 -0.0001 32 1 6.1659 -0.6429 -0.4868 33 1 6.1943 -0.0121 2.9048 34 1 6.4302 1.7277 3.1960 35 1 4.8576 1.1273 2.6169 36 1 2.6873 -3.6432 -0.0042 37 1 5.0186 -4.9647 -0.8953 38 1 5.0193 -4.9659 0.8847 39 1 2.7734 -6.0177 0.8840 40 1 2.7733 -6.0161 -0.8959 41 1 4.7940 -7.4526 -0.8980 42 1 4.7947 -7.4546 0.8820 43 1 5.2710 -10.9952 -0.0098 44 1 1.6499 -2.1290 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171593890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = -92.631110 kcal Electronic energy + Delta-G solvation = -26920.726243 eV Core-core repulsion = 22964.833880 eV Total energy + Delta-G solvation = -3955.892363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72105 -38.77085 -37.48001 -36.39235 -36.15155 -35.22356 -33.46462 -32.08631 -31.44559 -30.76655 -29.86265 -26.89169 -26.47209 -24.38971 -23.18508 -21.90702 -20.91157 -20.09034 -19.83302 -18.20523 -17.98621 -17.24919 -16.71318 -16.47490 -15.90559 -15.80647 -15.45468 -15.02806 -14.92819 -14.49127 -14.37976 -14.25840 -13.79397 -13.71282 -13.59058 -13.51911 -13.02784 -12.82313 -12.49666 -12.46929 -12.36168 -12.29072 -12.12090 -11.89419 -11.80204 -11.50275 -11.32536 -10.96314 -10.94601 -10.78673 -10.61546 -9.97959 -9.94074 -9.45792 -9.42648 -9.15703 -8.92699 -8.46508 -8.41786 -6.06082 -4.09389 -0.20907 0.55541 0.93775 2.22101 2.69119 3.20250 3.26896 3.34669 3.34804 3.37860 3.49773 3.81171 4.32275 4.39830 4.41261 4.42908 4.53667 4.56773 4.68656 4.91754 4.98353 5.26452 5.28802 5.29957 5.30005 5.41970 5.51145 5.63071 5.68919 5.74992 5.82408 5.99283 6.07437 6.18268 6.30350 6.46917 6.51422 6.70909 6.82952 6.93372 7.54014 7.58545 7.70234 7.92246 8.19177 8.33298 8.97415 9.55170 11.05212 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002360 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.321367 B =11860.994651 C =13453.073227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.112 4.112 3 C -0.064 4.064 4 C -0.186 4.186 5 C 0.210 3.790 6 N -1.040 6.040 7 S 2.607 3.393 8 C -0.668 4.668 9 O -0.946 6.946 10 O -0.954 6.954 11 C -0.156 4.156 12 C 0.556 3.444 13 O -0.543 6.543 14 N -0.716 5.716 15 C 0.115 3.885 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.062 4.062 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.167 0.833 32 H 0.441 0.559 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 26.949 3.408 28.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.083 4.083 4 C -0.208 4.208 5 C 0.109 3.891 6 N -0.794 5.794 7 S 2.700 3.300 8 C -0.819 4.819 9 O -0.936 6.936 10 O -0.944 6.944 11 C -0.163 4.163 12 C 0.343 3.657 13 O -0.422 6.422 14 N -0.367 5.367 15 C -0.007 4.007 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.081 4.081 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.185 0.815 32 H 0.286 0.714 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.193 27.487 3.129 28.147 hybrid contribution -1.256 -1.673 0.297 2.113 sum -6.449 25.814 3.426 26.827 Atomic orbital electron populations 1.20792 0.90442 1.03194 1.02610 1.19879 0.96636 0.92696 1.02113 1.21094 0.93261 0.97929 0.95992 1.21992 0.95483 0.98046 1.05233 1.17363 0.82503 0.92757 0.96428 1.53505 1.12162 1.50267 1.63461 1.05114 0.73845 0.73598 0.77398 1.30448 1.13494 1.12640 1.25273 1.93651 1.31416 1.82804 1.85766 1.93546 1.80722 1.43938 1.76162 1.19938 0.93856 0.92682 1.09867 1.18066 0.87194 0.83596 0.76845 1.90629 1.13420 1.87201 1.50999 1.46130 1.10525 1.06196 1.73806 1.21723 0.95588 0.81107 1.02306 1.21899 0.97833 0.95270 1.00925 1.19031 0.95477 0.89179 0.97697 1.21227 0.92997 0.90913 1.50974 0.92595 1.25033 0.95134 0.99070 0.95240 1.69973 1.12458 1.20250 1.50518 0.86526 0.81333 0.82423 0.77635 1.19760 1.20972 1.20990 1.21145 0.92091 0.98466 0.96427 0.90968 0.91315 0.91197 0.84847 0.81539 0.71433 0.84641 0.84877 0.85138 0.76646 0.91423 0.91453 0.92682 0.92659 0.96235 0.96259 0.92936 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.00 36.01 0.36 -0.21 16 2 C -0.11 -0.82 5.87 -104.66 -0.61 -1.43 16 3 C -0.06 -0.46 9.67 -39.55 -0.38 -0.84 16 4 C -0.19 -1.66 9.23 -39.42 -0.36 -2.02 16 5 C 0.21 2.22 6.10 -83.61 -0.51 1.71 16 6 N -1.04 -11.48 4.96 32.55 0.16 -11.32 16 7 S 2.61 25.22 5.86 -107.50 -0.63 24.59 16 8 C -0.67 -4.17 10.69 101.05 1.08 -3.09 16 9 O -0.95 -12.72 18.08 -57.54 -1.04 -13.76 16 10 O -0.95 -10.57 15.08 -57.54 -0.87 -11.44 16 11 C -0.16 -1.72 5.89 -104.80 -0.62 -2.34 16 12 C 0.56 7.69 7.76 -12.52 -0.10 7.59 16 13 O -0.54 -8.99 13.92 5.27 0.07 -8.91 16 14 N -0.72 -9.50 5.51 -61.38 -0.34 -9.84 16 15 C 0.12 1.90 5.67 -4.05 -0.02 1.88 16 16 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 19 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C -0.06 -0.53 9.17 -39.20 -0.36 -0.89 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 31 H 0.17 1.47 5.20 -52.48 -0.27 1.20 16 32 H 0.44 5.48 6.55 -34.47 -0.23 5.25 16 33 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 4.17 6.50 -40.82 -0.27 3.90 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.13 0.89 6.40 -52.48 -0.34 0.56 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -35.75 378.78 -9.57 -45.32 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.13 Total: 3.94 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.22 Total: -14.69 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.56 Total: -46.88 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.83 Total: -34.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 25.22 SS G_CDS: -0.63 Total: 24.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.75 -9.57 -45.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.316 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds