Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38616 * 119.82219 * 2 1 4 4 C 1.37949 * 120.42306 * 180.02562 * 3 2 1 5 5 C 1.38956 * 120.06578 * 0.02562 * 4 3 2 6 6 N 1.38878 * 120.17886 * 180.27161 * 5 4 3 7 7 S 1.65600 * 119.99639 * 35.69379 * 6 5 4 8 8 C 1.81407 * 104.44801 * 59.49301 * 7 6 5 9 9 O 1.42098 * 104.27482 * 175.56176 * 7 6 5 10 10 O 1.42100 * 104.28069 * 303.42220 * 7 6 5 11 11 C 1.40347 * 119.64762 * 0.02562 * 5 4 3 12 12 C 1.47436 * 120.20902 * 180.02562 * 11 5 4 13 13 O 1.21603 * 119.99953 * 359.97438 * 12 11 5 14 14 N 1.34774 * 120.00288 * 179.97438 * 12 11 5 15 15 C 1.46495 * 120.00077 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47296 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47658 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47674 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99549 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00171 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99580 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99705 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47010 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46740 * 120.00269 * 22 20 18 25 25 H 1.48502 * 109.46794 * 240.00109 * 22 20 18 26 26 C 1.37748 * 119.82829 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47278 * 269.97709 * 1 2 3 28 28 H 1.08992 * 109.47016 * 29.98135 * 1 2 3 29 29 H 1.09000 * 109.46684 * 149.97984 * 1 2 3 30 30 H 1.08003 * 119.78688 * 0.03983 * 3 2 1 31 31 H 1.08004 * 119.96829 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00207 * 215.69209 * 6 5 4 33 33 H 1.08995 * 109.47217 * 59.99928 * 8 7 6 34 34 H 1.09001 * 109.46670 * 179.97438 * 8 7 6 35 35 H 1.08993 * 109.47224 * 299.99511 * 8 7 6 36 36 H 0.97006 * 119.99836 * 0.02562 * 14 12 11 37 37 H 1.09006 * 109.47220 * 299.99792 * 15 14 12 38 38 H 1.09000 * 109.47519 * 60.00119 * 15 14 12 39 39 H 1.08999 * 109.47313 * 300.00149 * 16 15 14 40 40 H 1.09003 * 109.47357 * 59.99643 * 16 15 14 41 41 H 1.08997 * 109.47417 * 300.00114 * 17 16 15 42 42 H 1.09010 * 109.46602 * 59.99932 * 17 16 15 43 43 H 0.97008 * 119.99806 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.03259 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2026 0.0000 4 6 3.5758 1.2171 -0.0005 5 6 4.2845 0.0218 -0.0016 6 7 5.6733 0.0336 0.0035 7 16 6.4881 1.2028 0.8469 8 6 5.9375 0.9903 2.5623 9 8 7.8560 0.8417 0.7140 10 8 5.9980 2.4255 0.3138 11 6 3.5895 -1.1974 -0.0027 12 6 4.3290 -2.4729 -0.0033 13 8 5.5450 -2.4707 -0.0033 14 7 3.6573 -3.6414 -0.0038 15 6 4.3922 -4.9087 -0.0049 16 6 3.4002 -6.0735 -0.0060 17 6 4.1676 -7.3971 -0.0078 18 6 3.1904 -8.5444 -0.0082 19 1 2.1282 -8.3490 -0.0077 20 6 3.6525 -9.8434 -0.0093 21 7 4.9459 -10.0812 -0.0094 22 14 2.4412 -11.2655 -0.0105 23 1 1.0544 -10.7344 -0.0095 24 1 2.6532 -12.0953 -1.2237 25 1 2.6531 -12.0972 1.2014 26 6 2.1922 -1.1950 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6500 2.1342 0.0007 31 1 4.1055 2.1583 -0.0001 32 1 6.1659 -0.6429 -0.4868 33 1 6.1943 -0.0121 2.9048 34 1 6.4302 1.7277 3.1960 35 1 4.8576 1.1273 2.6169 36 1 2.6873 -3.6432 -0.0042 37 1 5.0186 -4.9647 -0.8953 38 1 5.0193 -4.9659 0.8847 39 1 2.7734 -6.0177 0.8840 40 1 2.7733 -6.0161 -0.8959 41 1 4.7940 -7.4526 -0.8980 42 1 4.7947 -7.4546 0.8820 43 1 5.2710 -10.9952 -0.0098 44 1 1.6499 -2.1290 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171593890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = -118.882887 kcal Electronic energy + Delta-G solvation = -26921.864606 eV Core-core repulsion = 22964.833880 eV Total energy + Delta-G solvation = -3957.030726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58885 -39.71283 -38.32872 -37.28200 -37.16890 -36.36883 -35.18437 -33.43013 -32.05948 -31.99270 -30.42635 -28.58786 -27.03348 -25.61520 -24.44173 -22.82307 -22.34502 -21.27096 -20.60435 -19.04036 -18.77064 -18.50164 -18.13377 -17.45563 -16.99704 -16.74333 -16.58762 -16.46677 -15.83025 -15.75710 -15.46632 -15.04429 -14.63605 -14.54980 -14.21836 -14.15173 -14.12232 -13.79618 -13.75708 -13.53484 -13.40456 -13.32129 -13.15725 -13.00506 -12.78204 -12.68567 -12.54417 -12.35083 -12.22344 -11.96162 -11.68474 -11.67518 -11.52773 -11.21772 -10.82451 -10.56320 -10.28068 -9.97765 -9.15758 -8.19730 -6.31055 -0.92702 -0.18495 0.28078 1.41972 1.42218 1.46835 1.55230 1.79252 2.11202 2.42488 2.61926 2.73226 3.09319 3.14498 3.61317 3.76092 3.80867 3.97718 4.00546 4.07727 4.16651 4.21138 4.32782 4.36103 4.54513 4.69920 4.81370 4.88907 4.93870 4.96327 4.97614 4.99432 5.14565 5.17138 5.31148 5.36557 5.38864 5.52315 5.60229 5.70626 5.78847 5.84334 5.99837 6.22001 6.50075 6.87010 7.15034 7.38816 8.92580 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002360 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.321367 B =11860.994651 C =13453.073227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.053 4.053 4 C -0.192 4.192 5 C 0.196 3.804 6 N -1.050 6.050 7 S 2.610 3.390 8 C -0.649 4.649 9 O -0.992 6.992 10 O -0.973 6.973 11 C -0.174 4.174 12 C 0.553 3.447 13 O -0.578 6.578 14 N -0.707 5.707 15 C 0.129 3.871 16 C -0.102 4.102 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.068 0.932 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.060 4.060 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.432 0.568 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.414 0.586 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.068 0.932 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 28.209 4.265 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.071 4.071 4 C -0.213 4.213 5 C 0.096 3.904 6 N -0.801 5.801 7 S 2.708 3.292 8 C -0.803 4.803 9 O -0.983 6.983 10 O -0.963 6.963 11 C -0.182 4.182 12 C 0.342 3.658 13 O -0.460 6.460 14 N -0.358 5.358 15 C 0.006 3.994 16 C -0.140 4.140 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.180 1.180 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.079 4.079 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.184 0.816 32 H 0.274 0.726 33 H 0.157 0.843 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.974 28.781 3.954 30.406 hybrid contribution -0.134 -1.981 0.061 1.987 sum -9.108 26.800 4.015 28.588 Atomic orbital electron populations 1.20863 0.88348 1.04164 1.03601 1.20188 0.98032 0.92044 1.00662 1.21490 0.92557 0.99345 0.93715 1.22063 0.96327 0.97216 1.05732 1.17584 0.82214 0.93365 0.97200 1.53507 1.12685 1.49866 1.64044 1.04866 0.72781 0.72811 0.78768 1.30283 1.14926 1.13788 1.21264 1.93589 1.34308 1.83344 1.87082 1.93510 1.80568 1.44596 1.77590 1.19748 0.94789 0.91050 1.12584 1.18555 0.86975 0.84468 0.75805 1.90619 1.15110 1.87754 1.52480 1.45854 1.11174 1.04907 1.73903 1.21280 0.95002 0.82205 1.00960 1.21599 0.97499 0.92617 1.02257 1.18946 0.95158 0.92313 0.95038 1.21715 0.93921 0.91815 1.50223 0.91414 1.26026 0.96965 1.02347 0.94845 1.70120 1.14716 1.20968 1.51819 0.85373 0.79405 0.78547 0.77555 1.18035 1.20713 1.20655 1.21378 0.90978 1.00007 0.95585 0.89842 0.89954 0.90739 0.81800 0.81606 0.72593 0.84342 0.82076 0.83167 0.74764 0.93064 0.92831 0.91135 0.91301 0.99066 0.98958 0.92856 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.00 71.24 0.71 0.06 16 2 C -0.11 -1.20 5.87 -19.89 -0.12 -1.32 16 3 C -0.05 -0.58 9.67 22.29 0.22 -0.37 16 4 C -0.19 -3.09 9.23 22.37 0.21 -2.89 16 5 C 0.20 4.06 6.10 38.71 0.24 4.29 16 6 N -1.05 -24.07 4.96 -50.94 -0.25 -24.32 16 7 S 2.61 51.63 5.86 -56.49 -0.33 51.30 16 8 C -0.65 -6.98 10.69 113.37 1.21 -5.77 16 9 O -0.99 -28.34 18.08 -127.65 -2.31 -30.64 16 10 O -0.97 -21.65 15.08 -127.65 -1.92 -23.57 16 11 C -0.17 -3.69 5.89 -19.98 -0.12 -3.81 16 12 C 0.55 15.37 7.76 86.67 0.67 16.04 16 13 O -0.58 -19.99 13.92 -4.04 -0.06 -20.04 16 14 N -0.71 -18.32 5.51 -466.38 -2.57 -20.89 16 15 C 0.13 4.35 5.67 86.38 0.49 4.85 16 16 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 17 C 0.02 1.18 4.97 29.85 0.15 1.33 16 18 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 19 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 21 N -0.94 -56.74 13.29 21.45 0.28 -56.46 16 22 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 26 C -0.06 -0.88 9.17 22.51 0.21 -0.68 16 27 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.29 8.08 -2.39 -0.02 0.27 16 29 H 0.07 0.40 8.08 -2.39 -0.02 0.38 16 30 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 31 H 0.17 2.71 5.20 -2.91 -0.02 2.70 16 32 H 0.43 11.63 6.55 -96.75 -0.63 11.00 16 33 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.41 7.87 6.50 -92.70 -0.60 7.27 16 37 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 44 H 0.15 1.56 6.40 -2.91 -0.02 1.54 16 Total: -1.00 -80.05 378.78 -0.60 -80.66 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.20 Total: 19.63 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 4.72 Total: -20.85 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -2.54 Total: -101.67 kcal Atomic # 8 Polarization: -69.97 SS G_CDS: -4.29 Total: -74.26 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 51.63 SS G_CDS: -0.33 Total: 51.30 kcal Total: -80.05 -0.60 -80.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171593890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.228 kcal (2) G-P(sol) polarization free energy of solvation -80.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds