Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86796 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47534 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47031 * 299.99620 * 3 2 1 6 6 H 1.48498 * 109.47702 * 59.99041 * 3 2 1 7 7 C 1.39905 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00423 * 174.57870 * 7 2 1 9 9 C 1.41155 * 119.99675 * 354.58029 * 7 2 1 10 10 C 1.40869 * 120.16475 * 325.32510 * 9 7 2 11 11 C 1.36380 * 119.82504 * 180.32062 * 10 9 7 12 12 C 1.39478 * 120.17356 * 359.92900 * 11 10 9 13 13 N 1.39233 * 119.83457 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99813 * 214.74119 * 13 12 11 15 15 O 1.21282 * 120.00668 * 5.58045 * 14 13 12 16 16 C 1.50706 * 119.99921 * 185.57484 * 14 13 12 17 17 H 1.09004 * 110.85944 * 300.70654 * 16 14 13 18 18 C 1.54633 * 110.96900 * 64.49230 * 16 14 13 19 19 C 1.51375 * 104.14761 * 93.33052 * 18 16 14 20 20 O 1.21306 * 124.93812 * 196.22316 * 19 18 16 21 21 N 1.34418 * 110.12428 * 16.26027 * 19 18 16 22 22 C 1.40766 * 124.34962 * 180.37745 * 21 19 18 23 23 C 1.40258 * 126.08071 * 179.71161 * 22 21 19 24 24 N 1.30830 * 108.33381 * 179.81680 * 23 22 21 25 25 N 1.40062 * 108.37033 * 0.44402 * 24 23 22 26 26 H 0.97003 * 126.05739 * 179.73280 * 25 24 23 27 27 C 1.35751 * 126.08366 * 0.02818 * 22 21 19 28 28 C 1.46763 * 111.30425 * 0.40032 * 21 19 18 29 29 C 1.39483 * 120.33000 * 0.05141 * 12 11 10 30 30 C 1.36371 * 120.17112 * 359.97438 * 29 12 11 31 31 H 0.96998 * 119.99908 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.08673 * 0.24488 * 10 9 7 33 33 H 1.08005 * 119.90922 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00127 * 34.74421 * 13 12 11 35 35 H 1.08995 * 110.48966 * 211.99858 * 18 16 14 36 36 H 1.09001 * 110.48505 * 334.64530 * 18 16 14 37 37 H 1.08003 * 125.82890 * 0.02562 * 23 22 21 38 38 H 1.08006 * 126.21515 * 0.02562 * 27 22 21 39 39 H 1.08995 * 110.24614 * 223.98632 * 28 21 19 40 40 H 1.09004 * 110.32028 * 102.01668 * 28 21 19 41 41 H 1.08002 * 119.91299 * 179.97438 * 29 12 11 42 42 H 1.08000 * 120.08829 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8839 2.3966 1.2123 7 6 2.0083 -1.2116 0.0005 8 1 3.0846 -1.2138 -0.0878 9 6 1.3072 -2.4312 0.1166 10 6 0.1469 -2.5078 0.9116 11 6 -0.5214 -3.6914 1.0240 12 6 -0.0596 -4.8237 0.3532 13 7 -0.7476 -6.0282 0.4725 14 6 -0.0703 -7.1934 0.4786 15 8 1.1425 -7.1899 0.4823 16 6 -0.8200 -8.5007 0.4810 17 1 -1.4669 -8.5757 1.3551 18 6 -1.6308 -8.6761 -0.8240 19 6 -0.7040 -9.4536 -1.7338 20 8 -0.8377 -9.5601 -2.9348 21 7 0.2882 -10.0095 -1.0174 22 6 1.3223 -10.7914 -1.5660 23 6 2.3766 -11.3831 -0.8550 24 7 3.1323 -12.0317 -1.7035 25 7 2.5947 -11.8697 -2.9867 26 1 2.9548 -12.2405 -3.8076 27 6 1.4798 -11.1019 -2.8781 28 6 0.1548 -9.6971 0.4104 29 6 1.0883 -4.7555 -0.4362 30 6 1.7675 -3.5792 -0.5579 31 1 -0.4850 0.8400 -0.0004 32 1 -0.2119 -1.6320 1.4317 33 1 -1.4110 -3.7517 1.6336 34 1 -1.7144 -6.0288 0.5513 35 1 -2.5424 -9.2424 -0.6336 36 1 -1.8676 -7.7052 -1.2593 37 1 2.5354 -11.3174 0.2113 38 1 0.8356 -10.7939 -3.6885 39 1 1.1227 -9.4202 0.8280 40 1 -0.2570 -10.5514 0.9479 41 1 1.4402 -5.6365 -0.9523 42 1 2.6565 -3.5280 -1.1691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177638391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = 38.362157 kcal Electronic energy + Delta-G solvation = -28322.271765 eV Core-core repulsion = 24268.908496 eV Total energy + Delta-G solvation = -4053.363269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72837 -40.63551 -39.28385 -37.44576 -36.34208 -34.53540 -33.46947 -32.76879 -31.47480 -29.67336 -29.24490 -28.53127 -27.97141 -25.35029 -23.56510 -22.85416 -21.70203 -21.32198 -20.66959 -19.68171 -19.40941 -18.30659 -17.69351 -17.30364 -16.71755 -16.25590 -15.80151 -15.33151 -15.19596 -14.96439 -14.69608 -14.47611 -14.00040 -13.95942 -13.94857 -13.51023 -13.20313 -12.90051 -12.70637 -12.57632 -12.19721 -12.03285 -11.78790 -11.75161 -11.52131 -11.19812 -11.18392 -10.94336 -10.60004 -10.54872 -10.10637 -10.02380 -9.85444 -9.82372 -9.43648 -9.25288 -8.84171 -7.87861 -7.61478 -6.94974 -6.71057 -4.36236 1.60570 2.08434 2.37361 2.41118 2.89307 2.92720 3.00640 3.02803 3.08273 3.13779 3.24927 3.46395 3.95219 3.97423 4.06039 4.49548 4.65295 4.66358 4.73549 4.83820 5.09005 5.14129 5.29473 5.32373 5.43259 5.50814 5.52565 5.61836 5.89515 6.12339 6.33058 6.60650 6.66691 6.83129 6.84052 7.00970 7.02958 7.13947 7.23038 7.39712 7.55086 7.63457 7.78259 7.93590 8.00869 8.16490 8.24048 8.54251 8.63890 8.87369 8.93878 10.24802 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002396 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.991492 B =11684.770912 C =12355.425576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.108 3.892 10 C -0.140 4.140 11 C -0.116 4.116 12 C 0.001 3.999 13 N -0.646 5.646 14 C 0.503 3.497 15 O -0.521 6.521 16 C -0.124 4.124 17 H 0.128 0.872 18 C -0.142 4.142 19 C 0.516 3.484 20 O -0.525 6.525 21 N -0.528 5.528 22 C 0.014 3.986 23 C 0.046 3.954 24 N -0.280 5.280 25 N -0.474 5.474 26 H 0.444 0.556 27 C 0.040 3.960 28 C 0.116 3.884 29 C -0.079 4.079 30 C -0.205 4.205 31 H 0.278 0.722 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.188 0.812 38 H 0.191 0.809 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -18.755 0.862 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.160 4.160 11 C -0.136 4.136 12 C -0.091 4.091 13 N -0.289 5.289 14 C 0.288 3.712 15 O -0.397 6.397 16 C -0.146 4.146 17 H 0.146 0.854 18 C -0.182 4.182 19 C 0.305 3.695 20 O -0.401 6.401 21 N -0.254 5.254 22 C -0.089 4.089 23 C -0.143 4.143 24 N -0.102 5.102 25 N -0.187 5.187 26 H 0.289 0.711 27 C -0.108 4.108 28 C -0.007 4.007 29 C -0.099 4.099 30 C -0.226 4.226 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.230 0.770 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.205 0.795 38 H 0.208 0.792 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.486 -19.376 0.079 19.687 hybrid contribution -0.821 1.267 -0.241 1.529 sum -4.306 -18.109 -0.162 18.615 Atomic orbital electron populations 1.69785 1.07298 1.28844 1.37677 1.25864 0.94909 1.01117 0.92471 0.86194 0.80738 0.80913 0.78437 1.18539 1.20022 1.19878 1.19548 0.95008 0.90189 1.44610 0.90451 1.17695 0.91529 0.92088 0.88147 1.20939 0.98299 0.95798 1.00974 1.20259 1.00071 0.93208 1.00050 1.17155 0.99577 0.84494 1.07848 1.42935 1.09629 1.04852 1.71477 1.20088 0.88243 0.84906 0.77942 1.90730 1.13523 1.86840 1.48595 1.22341 0.98022 0.93828 1.00423 0.85400 1.22357 0.98584 1.03262 0.94035 1.20878 0.81639 0.79208 0.87810 1.90669 1.74238 1.61534 1.13630 1.45058 1.23455 1.48133 1.08776 1.17554 0.94589 1.04719 0.92032 1.23681 0.92557 0.97662 1.00378 1.77256 1.21505 1.23268 0.88217 1.46121 1.21374 1.42707 1.08451 0.71095 1.22522 0.92303 0.97906 0.98054 1.22107 1.02168 0.96011 0.80387 1.20230 0.95164 0.97098 0.97431 1.20787 1.02801 0.93847 1.05122 0.91099 0.86097 0.88990 0.76969 0.86310 0.86929 0.79543 0.79244 0.87690 0.89502 0.88270 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.64 10.97 55.55 0.61 -20.03 16 2 C 0.07 1.80 5.31 -17.34 -0.09 1.70 16 3 Si 0.91 18.74 29.56 -169.99 -5.03 13.71 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.24 9.02 -37.85 -0.34 -12.58 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 9 C 0.11 2.85 5.50 -106.80 -0.59 2.26 16 10 C -0.14 -3.50 8.57 -39.26 -0.34 -3.84 16 11 C -0.12 -2.51 9.90 -39.79 -0.39 -2.91 16 12 C 0.00 0.03 6.26 -83.57 -0.52 -0.50 16 13 N -0.65 -10.03 5.12 -9.74 -0.05 -10.08 16 14 C 0.50 7.43 6.83 -10.98 -0.08 7.36 16 15 O -0.52 -10.03 13.28 5.56 0.07 -9.95 16 16 C -0.12 -1.11 3.54 -90.13 -0.32 -1.43 16 17 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 18 C -0.14 -1.26 6.40 -26.69 -0.17 -1.43 16 19 C 0.52 6.62 7.98 -10.81 -0.09 6.53 16 20 O -0.52 -8.24 15.64 5.54 0.09 -8.16 16 21 N -0.53 -6.25 3.16 -112.44 -0.36 -6.60 16 22 C 0.01 0.17 6.80 -83.88 -0.57 -0.40 16 23 C 0.05 0.52 11.53 -17.22 -0.20 0.32 16 24 N -0.28 -3.36 12.69 30.71 0.39 -2.97 16 25 N -0.47 -4.81 7.40 30.69 0.23 -4.59 16 26 H 0.44 2.93 8.96 -182.62 -1.64 1.30 16 27 C 0.04 0.47 11.18 -16.68 -0.19 0.29 16 28 C 0.12 1.06 6.28 -3.12 -0.02 1.04 16 29 C -0.08 -1.86 8.57 -39.79 -0.34 -2.20 16 30 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 31 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 32 H 0.12 3.11 6.47 -52.49 -0.34 2.77 16 33 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.40 4.59 8.82 -40.82 -0.36 4.23 16 35 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.09 7.75 -51.93 -0.40 0.69 16 37 H 0.19 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.19 2.20 6.51 -52.48 -0.34 1.86 16 39 H 0.10 1.12 6.97 -51.93 -0.36 0.75 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.10 2.32 6.50 -52.49 -0.34 1.98 16 42 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -34.52 359.28 -9.12 -43.64 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.87 Total: 10.95 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -4.62 Total: -11.33 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.82 Total: -44.28 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.11 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.52 -9.12 -43.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177638391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.999 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds