Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86796 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47534 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47031 * 299.99620 * 3 2 1 6 6 H 1.48498 * 109.47702 * 59.99041 * 3 2 1 7 7 C 1.39905 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00423 * 174.57870 * 7 2 1 9 9 C 1.41155 * 119.99675 * 354.58029 * 7 2 1 10 10 C 1.40869 * 120.16475 * 325.32510 * 9 7 2 11 11 C 1.36380 * 119.82504 * 180.32062 * 10 9 7 12 12 C 1.39478 * 120.17356 * 359.92900 * 11 10 9 13 13 N 1.39233 * 119.83457 * 180.02562 * 12 11 10 14 14 C 1.34774 * 119.99813 * 214.74119 * 13 12 11 15 15 O 1.21282 * 120.00668 * 5.58045 * 14 13 12 16 16 C 1.50706 * 119.99921 * 185.57484 * 14 13 12 17 17 H 1.09004 * 110.85944 * 300.70654 * 16 14 13 18 18 C 1.54633 * 110.96900 * 64.49230 * 16 14 13 19 19 C 1.51375 * 104.14761 * 93.33052 * 18 16 14 20 20 O 1.21306 * 124.93812 * 196.22316 * 19 18 16 21 21 N 1.34418 * 110.12428 * 16.26027 * 19 18 16 22 22 C 1.40766 * 124.34962 * 180.37745 * 21 19 18 23 23 C 1.40258 * 126.08071 * 179.71161 * 22 21 19 24 24 N 1.30830 * 108.33381 * 179.81680 * 23 22 21 25 25 N 1.40062 * 108.37033 * 0.44402 * 24 23 22 26 26 H 0.97003 * 126.05739 * 179.73280 * 25 24 23 27 27 C 1.35751 * 126.08366 * 0.02818 * 22 21 19 28 28 C 1.46763 * 111.30425 * 0.40032 * 21 19 18 29 29 C 1.39483 * 120.33000 * 0.05141 * 12 11 10 30 30 C 1.36371 * 120.17112 * 359.97438 * 29 12 11 31 31 H 0.96998 * 119.99908 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.08673 * 0.24488 * 10 9 7 33 33 H 1.08005 * 119.90922 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00127 * 34.74421 * 13 12 11 35 35 H 1.08995 * 110.48966 * 211.99858 * 18 16 14 36 36 H 1.09001 * 110.48505 * 334.64530 * 18 16 14 37 37 H 1.08003 * 125.82890 * 0.02562 * 23 22 21 38 38 H 1.08006 * 126.21515 * 0.02562 * 27 22 21 39 39 H 1.08995 * 110.24614 * 223.98632 * 28 21 19 40 40 H 1.09004 * 110.32028 * 102.01668 * 28 21 19 41 41 H 1.08002 * 119.91299 * 179.97438 * 29 12 11 42 42 H 1.08000 * 120.08829 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3464 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8839 2.3966 1.2123 7 6 2.0083 -1.2116 0.0005 8 1 3.0846 -1.2138 -0.0878 9 6 1.3072 -2.4312 0.1166 10 6 0.1469 -2.5078 0.9116 11 6 -0.5214 -3.6914 1.0240 12 6 -0.0596 -4.8237 0.3532 13 7 -0.7476 -6.0282 0.4725 14 6 -0.0703 -7.1934 0.4786 15 8 1.1425 -7.1899 0.4823 16 6 -0.8200 -8.5007 0.4810 17 1 -1.4669 -8.5757 1.3551 18 6 -1.6308 -8.6761 -0.8240 19 6 -0.7040 -9.4536 -1.7338 20 8 -0.8377 -9.5601 -2.9348 21 7 0.2882 -10.0095 -1.0174 22 6 1.3223 -10.7914 -1.5660 23 6 2.3766 -11.3831 -0.8550 24 7 3.1323 -12.0317 -1.7035 25 7 2.5947 -11.8697 -2.9867 26 1 2.9548 -12.2405 -3.8076 27 6 1.4798 -11.1019 -2.8781 28 6 0.1548 -9.6971 0.4104 29 6 1.0883 -4.7555 -0.4362 30 6 1.7675 -3.5792 -0.5579 31 1 -0.4850 0.8400 -0.0004 32 1 -0.2119 -1.6320 1.4317 33 1 -1.4110 -3.7517 1.6336 34 1 -1.7144 -6.0288 0.5513 35 1 -2.5424 -9.2424 -0.6336 36 1 -1.8676 -7.7052 -1.2593 37 1 2.5354 -11.3174 0.2113 38 1 0.8356 -10.7939 -3.6885 39 1 1.1227 -9.4202 0.8280 40 1 -0.2570 -10.5514 0.9479 41 1 1.4402 -5.6365 -0.9523 42 1 2.6565 -3.5280 -1.1691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177638391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = 14.285487 kcal Electronic energy + Delta-G solvation = -28323.315808 eV Core-core repulsion = 24268.908496 eV Total energy + Delta-G solvation = -4054.407312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60988 -41.65256 -40.52926 -39.06563 -37.38905 -36.13511 -34.82886 -33.99814 -32.34783 -31.50137 -30.86466 -29.61079 -28.76182 -26.99457 -24.74868 -23.77006 -23.25265 -22.54248 -22.14245 -20.85735 -20.39317 -19.25836 -19.17465 -18.71335 -18.04684 -17.30871 -17.02372 -16.83226 -16.19592 -16.13728 -15.69839 -15.58254 -15.45782 -15.19642 -14.97886 -14.75377 -14.49678 -14.15170 -14.01419 -13.79097 -13.71737 -13.44809 -13.22059 -12.89799 -12.81381 -12.66290 -12.53348 -12.35731 -12.08741 -11.84391 -11.56769 -11.40060 -11.13709 -10.96503 -10.81695 -10.73165 -10.47024 -9.48743 -8.76748 -8.73952 -8.55961 -6.31261 0.70620 0.78303 1.11256 1.18862 1.39579 1.42079 1.53624 1.58232 1.79915 2.02735 2.19924 2.24046 2.31238 2.79084 3.21184 3.28369 3.66793 3.73040 3.81364 3.89920 3.98764 4.37927 4.39891 4.44767 4.45504 4.52957 4.60191 4.73801 4.82831 4.88240 4.92464 5.08096 5.11814 5.14632 5.32725 5.42800 5.66336 5.75080 5.87674 6.00856 6.02105 6.11016 6.25528 6.38302 6.55962 6.65387 6.74766 6.95048 6.99299 7.03315 7.42024 8.41858 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002396 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.991492 B =11684.770912 C =12355.425576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.074 3.926 10 C -0.156 4.156 11 C -0.113 4.113 12 C 0.028 3.972 13 N -0.641 5.641 14 C 0.500 3.500 15 O -0.568 6.568 16 C -0.104 4.104 17 H 0.187 0.813 18 C -0.131 4.131 19 C 0.496 3.504 20 O -0.567 6.567 21 N -0.531 5.531 22 C -0.010 4.010 23 C 0.045 3.955 24 N -0.300 5.300 25 N -0.464 5.464 26 H 0.457 0.543 27 C 0.034 3.966 28 C 0.110 3.890 29 C -0.093 4.093 30 C -0.225 4.225 31 H 0.286 0.714 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.421 0.579 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.211 0.789 38 H 0.187 0.813 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 -20.100 2.546 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.072 3.928 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.066 4.066 13 N -0.286 5.286 14 C 0.288 3.712 15 O -0.447 6.447 16 C -0.125 4.125 17 H 0.204 0.796 18 C -0.170 4.170 19 C 0.287 3.713 20 O -0.447 6.447 21 N -0.256 5.256 22 C -0.113 4.113 23 C -0.143 4.143 24 N -0.123 5.123 25 N -0.178 5.178 26 H 0.304 0.696 27 C -0.115 4.115 28 C -0.011 4.011 29 C -0.113 4.113 30 C -0.245 4.245 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.259 0.741 35 H 0.184 0.816 36 H 0.124 0.876 37 H 0.227 0.773 38 H 0.204 0.796 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.112 0.888 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.732 -20.770 1.781 21.620 hybrid contribution -0.138 1.463 -0.786 1.666 sum -5.869 -19.308 0.996 20.204 Atomic orbital electron populations 1.69824 1.08424 1.30132 1.38141 1.26636 0.95775 1.04000 0.91535 0.85134 0.79003 0.76429 0.78949 1.18812 1.19224 1.18598 1.19711 0.94814 0.91547 1.47357 0.91443 1.17973 0.92853 0.92539 0.89415 1.20945 0.98566 0.96812 1.01300 1.20560 1.00806 0.92099 0.99809 1.17185 0.98108 0.86526 1.04787 1.42886 1.10808 1.03340 1.71608 1.21230 0.88018 0.86372 0.75582 1.90731 1.16162 1.87707 1.50087 1.22421 0.97816 0.89472 1.02807 0.79585 1.22444 0.99207 1.02922 0.92469 1.21720 0.82384 0.79341 0.87892 1.90642 1.75411 1.63115 1.15522 1.45295 1.22866 1.47495 1.09966 1.17883 0.95449 1.05441 0.92483 1.24063 0.91884 0.96930 1.01406 1.77209 1.22182 1.24007 0.88907 1.46157 1.20799 1.42176 1.08690 0.69571 1.22592 0.92651 0.98116 0.98191 1.22417 1.01862 0.97750 0.79109 1.20294 0.96445 0.96179 0.98431 1.20880 1.03231 0.94663 1.05727 0.90316 0.87325 0.85027 0.74079 0.81589 0.87577 0.77269 0.79591 0.89388 0.84824 0.88782 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.55 10.97 21.82 0.24 -43.31 16 2 C 0.03 1.70 5.31 85.24 0.45 2.15 16 3 Si 0.98 39.09 29.56 68.60 2.03 41.12 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.50 -27.92 9.02 23.39 0.21 -27.71 16 8 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 9 C 0.07 4.10 5.50 -21.27 -0.12 3.99 16 10 C -0.16 -7.94 8.57 22.48 0.19 -7.74 16 11 C -0.11 -4.75 9.90 22.13 0.22 -4.53 16 12 C 0.03 1.12 6.26 38.57 0.24 1.36 16 13 N -0.64 -17.87 5.12 -303.11 -1.55 -19.42 16 14 C 0.50 13.32 6.83 87.66 0.60 13.92 16 15 O -0.57 -21.32 13.28 -3.04 -0.04 -21.36 16 16 C -0.10 -1.34 3.54 -10.48 -0.04 -1.38 16 17 H 0.19 0.39 8.14 -2.39 -0.02 0.37 16 18 C -0.13 -1.75 6.40 30.62 0.20 -1.56 16 19 C 0.50 11.80 7.98 87.93 0.70 12.50 16 20 O -0.57 -17.69 15.64 -3.11 -0.05 -17.74 16 21 N -0.53 -11.52 3.16 -628.24 -1.99 -13.50 16 22 C -0.01 -0.23 6.80 37.62 0.26 0.02 16 23 C 0.05 0.98 11.53 85.33 0.98 1.96 16 24 N -0.30 -7.03 12.69 -56.77 -0.72 -7.75 16 25 N -0.46 -9.34 7.40 -56.81 -0.42 -9.76 16 26 H 0.46 5.98 8.96 -213.34 -1.91 4.07 16 27 C 0.03 0.79 11.18 83.50 0.93 1.73 16 28 C 0.11 1.58 6.28 86.83 0.55 2.13 16 29 C -0.09 -4.45 8.57 22.13 0.19 -4.26 16 30 C -0.22 -11.86 9.74 22.48 0.22 -11.64 16 31 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 32 H 0.11 5.72 6.47 -2.91 -0.02 5.70 16 33 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.42 7.76 8.82 -92.71 -0.82 6.94 16 35 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 1.66 7.75 -2.39 -0.02 1.64 16 37 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.19 4.49 6.51 -2.91 -0.02 4.47 16 39 H 0.09 1.65 6.97 -2.39 -0.02 1.63 16 40 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.09 4.53 6.50 -2.91 -0.02 4.51 16 42 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -81.52 359.28 1.66 -79.86 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -1.62 Total: 30.93 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 5.79 Total: -19.06 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -4.44 Total: -93.75 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.09 Total: -39.10 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -81.52 1.66 -79.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177638391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.141 kcal (2) G-P(sol) polarization free energy of solvation -81.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds