Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48511 * 109.47095 * 240.00155 * 3 2 1 5 5 H 1.48499 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47057 * 120.00487 * 3 2 1 7 7 C 1.37879 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47419 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99600 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00215 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00242 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47472 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47339 * 179.97438 * 16 15 14 18 18 S 1.81398 * 109.47178 * 179.97438 * 17 16 15 19 19 O 1.42095 * 110.54225 * 68.37635 * 18 17 16 20 20 O 1.42100 * 110.54081 * 291.62780 * 18 17 16 21 21 C 1.76199 * 104.44793 * 180.02562 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00439 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97621 * 21 18 17 27 27 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47378 * 59.99955 * 9 7 2 29 29 H 1.09000 * 109.47016 * 300.00165 * 9 7 2 30 30 H 1.09000 * 109.46926 * 59.99624 * 10 9 7 31 31 H 1.09008 * 109.46958 * 299.99775 * 10 9 7 32 32 H 0.96999 * 120.00269 * 359.97438 * 11 10 9 33 33 H 0.96999 * 119.99968 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.47169 * 59.99713 * 15 14 12 35 35 H 1.09002 * 109.47142 * 300.00116 * 15 14 12 36 36 H 1.09003 * 109.46732 * 59.99985 * 16 15 14 37 37 H 1.09002 * 109.46844 * 300.00069 * 16 15 14 38 38 H 1.09004 * 109.46514 * 59.99903 * 17 16 15 39 39 H 1.08994 * 109.47457 * 300.00175 * 17 16 15 40 40 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0032 12 6 2.1866 -6.0980 -0.0028 13 8 3.4024 -6.0980 -0.0014 14 7 1.5127 -7.2652 -0.0039 15 6 2.2451 -8.5340 -0.0040 16 6 1.2509 -9.6969 -0.0060 17 6 2.0159 -11.0219 -0.0067 18 16 0.8371 -12.4007 -0.0083 19 8 0.1409 -12.4601 -1.2456 20 8 0.1399 -12.4620 1.2283 21 6 1.8484 -13.8436 -0.0083 22 6 2.2441 -14.4103 1.1889 23 6 3.0379 -15.5420 1.1888 24 6 3.4350 -16.1077 -0.0083 25 6 3.0433 -15.5382 -1.2055 26 6 2.2455 -14.4093 -1.2054 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8712 -3.6047 0.8890 31 1 2.8726 -3.6040 -0.8910 32 1 0.5427 -4.9308 -0.0039 33 1 0.5427 -7.2652 -0.0053 34 1 2.8712 -8.5922 0.8864 35 1 2.8725 -8.5913 -0.8936 36 1 0.6253 -9.6385 -0.8966 37 1 0.6233 -9.6398 0.8834 38 1 2.6419 -11.0805 0.8837 39 1 2.6433 -11.0788 -0.8962 40 1 1.9338 -13.9683 2.1242 41 1 3.3474 -15.9845 2.1241 42 1 4.0548 -16.9922 -0.0083 43 1 3.3572 -15.9776 -2.1408 44 1 1.9363 -13.9666 -2.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273094496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -87.043779 kcal Electronic energy + Delta-G solvation = -25323.012408 eV Core-core repulsion = 21367.362330 eV Total energy + Delta-G solvation = -3955.650078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.65314 -39.62309 -37.54489 -36.42590 -36.24262 -34.72448 -33.14399 -32.62040 -31.90729 -31.60919 -29.58205 -26.90967 -24.55184 -23.81640 -23.32293 -22.29187 -21.07779 -20.57660 -19.49463 -18.52023 -17.96103 -17.05155 -16.77228 -16.48940 -16.31936 -15.97411 -15.61689 -15.27698 -15.11023 -14.82104 -14.52075 -14.11466 -14.05893 -13.78789 -13.57976 -13.55873 -13.06069 -12.79415 -12.79023 -12.50519 -12.42333 -12.39657 -12.26089 -11.84814 -11.56659 -11.35168 -11.18842 -11.00479 -10.96714 -10.64227 -10.30453 -10.00519 -9.95461 -9.63571 -9.55399 -9.27012 -9.08550 -8.47783 -8.25733 -6.08006 -4.10779 -0.47091 0.25819 0.70351 2.37654 2.83985 2.98291 3.32324 3.36131 3.39475 3.44054 3.56159 3.62808 4.05322 4.10540 4.30993 4.31544 4.39855 4.41326 4.45407 4.72527 4.73097 4.77940 4.93739 4.99370 5.08513 5.19930 5.29027 5.32758 5.48442 5.60708 5.63391 5.67798 5.76458 6.23194 6.29149 6.40007 6.52054 6.77895 6.98975 7.20127 7.57204 7.64219 7.90850 8.26290 8.41422 8.92618 8.97937 9.53876 11.03585 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035006 B = 0.001455 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.678400 B =19233.739714 C =19545.119248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.757 5.757 15 C 0.149 3.851 16 C -0.129 4.129 17 C -0.602 4.602 18 S 2.497 3.503 19 O -0.933 6.933 20 O -0.933 6.933 21 C -0.661 4.661 22 C -0.024 4.024 23 C -0.141 4.141 24 C -0.066 4.066 25 C -0.141 4.141 26 C -0.025 4.025 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.394 0.606 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -35.083 -0.024 35.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.477 6.477 14 N -0.414 5.414 15 C 0.023 3.977 16 C -0.168 4.168 17 C -0.732 4.732 18 S 2.678 3.322 19 O -0.931 6.931 20 O -0.931 6.931 21 C -0.747 4.747 22 C -0.043 4.043 23 C -0.160 4.160 24 C -0.084 4.084 25 C -0.160 4.160 26 C -0.043 4.043 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.230 0.770 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.618 -34.929 -0.024 35.115 hybrid contribution 0.467 0.594 -0.001 0.755 sum 4.084 -34.335 -0.024 34.577 Atomic orbital electron populations 1.69941 1.06085 1.26969 1.50311 1.24990 0.94890 0.99383 0.94988 0.86566 0.79503 0.82645 0.78767 1.20119 1.21259 1.20126 1.21014 0.93234 0.90377 1.51452 0.92274 1.19327 0.94261 0.91058 0.97846 1.21604 0.95657 0.80383 1.00658 1.45542 1.09920 1.05311 1.78358 1.16038 0.85621 0.80461 0.78032 1.90889 1.11772 1.86681 1.58392 1.45098 1.09586 1.04681 1.82064 1.20986 0.93364 0.80360 1.02945 1.21570 0.98759 0.91592 1.04860 1.30236 1.16600 1.13418 1.12902 1.05456 0.76099 0.75821 0.74874 1.93588 1.69092 1.85963 1.44415 1.93589 1.69054 1.85953 1.44465 1.30615 1.21298 1.23243 0.99565 1.21031 0.92158 0.94385 0.96756 1.21354 0.99112 0.96744 0.98762 1.21552 0.96001 0.98195 0.92666 1.21355 0.99092 0.96764 0.98762 1.21029 0.92148 0.94404 0.96754 0.92806 0.95938 0.95940 0.92758 0.92768 0.77297 0.77044 0.91211 0.91224 0.89214 0.89209 0.84025 0.84020 0.83928 0.84864 0.85122 0.84863 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 11 N -0.74 -12.96 5.56 -65.22 -0.36 -13.32 16 12 C 0.70 12.05 8.57 -86.92 -0.74 11.30 16 13 O -0.60 -12.73 16.34 5.29 0.09 -12.64 16 14 N -0.76 -9.07 5.56 -65.23 -0.36 -9.43 16 15 C 0.15 1.45 5.67 -4.04 -0.02 1.43 16 16 C -0.13 -0.84 5.34 -26.73 -0.14 -0.98 16 17 C -0.60 -2.83 5.98 37.16 0.22 -2.61 16 18 S 2.50 17.99 5.16 -107.50 -0.55 17.43 16 19 O -0.93 -9.46 17.13 -57.54 -0.99 -10.45 16 20 O -0.93 -9.46 17.12 -57.54 -0.99 -10.45 16 21 C -0.66 -4.50 5.66 -39.58 -0.22 -4.72 16 22 C -0.02 -0.15 9.47 -39.58 -0.37 -0.53 16 23 C -0.14 -0.73 10.05 -39.58 -0.40 -1.12 16 24 C -0.07 -0.31 10.05 -39.58 -0.40 -0.71 16 25 C -0.14 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.02 -0.15 9.47 -39.58 -0.37 -0.53 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.39 5.89 8.49 -40.82 -0.35 5.54 16 33 H 0.40 3.57 8.49 -40.82 -0.35 3.22 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.14 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.14 0.71 7.57 -52.48 -0.40 0.32 16 41 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 42 H 0.13 0.28 8.06 -52.49 -0.42 -0.14 16 43 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 44 H 0.14 0.71 7.57 -52.49 -0.40 0.31 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -38.75 390.34 -11.52 -50.27 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.53 Total: 1.41 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -3.43 Total: -9.70 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.01 Total: -48.13 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.88 Total: -33.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 17.99 SS G_CDS: -0.55 Total: 17.43 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.75 -11.52 -50.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273094496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.774 kcal (2) G-P(sol) polarization free energy of solvation -38.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds