Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48511 * 109.47095 * 240.00155 * 3 2 1 5 5 H 1.48499 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47057 * 120.00487 * 3 2 1 7 7 C 1.37879 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00274 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47419 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47089 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99600 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00215 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00242 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47472 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47339 * 179.97438 * 16 15 14 18 18 S 1.81398 * 109.47178 * 179.97438 * 17 16 15 19 19 O 1.42095 * 110.54225 * 68.37635 * 18 17 16 20 20 O 1.42100 * 110.54081 * 291.62780 * 18 17 16 21 21 C 1.76199 * 104.44793 * 180.02562 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00439 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97621 * 21 18 17 27 27 H 0.96996 * 120.00294 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47378 * 59.99955 * 9 7 2 29 29 H 1.09000 * 109.47016 * 300.00165 * 9 7 2 30 30 H 1.09000 * 109.46926 * 59.99624 * 10 9 7 31 31 H 1.09008 * 109.46958 * 299.99775 * 10 9 7 32 32 H 0.96999 * 120.00269 * 359.97438 * 11 10 9 33 33 H 0.96999 * 119.99968 * 0.02562 * 14 12 11 34 34 H 1.08999 * 109.47169 * 59.99713 * 15 14 12 35 35 H 1.09002 * 109.47142 * 300.00116 * 15 14 12 36 36 H 1.09003 * 109.46732 * 59.99985 * 16 15 14 37 37 H 1.09002 * 109.46844 * 300.00069 * 16 15 14 38 38 H 1.09004 * 109.46514 * 59.99903 * 17 16 15 39 39 H 1.08994 * 109.47457 * 300.00175 * 17 16 15 40 40 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0032 12 6 2.1866 -6.0980 -0.0028 13 8 3.4024 -6.0980 -0.0014 14 7 1.5127 -7.2652 -0.0039 15 6 2.2451 -8.5340 -0.0040 16 6 1.2509 -9.6969 -0.0060 17 6 2.0159 -11.0219 -0.0067 18 16 0.8371 -12.4007 -0.0083 19 8 0.1409 -12.4601 -1.2456 20 8 0.1399 -12.4620 1.2283 21 6 1.8484 -13.8436 -0.0083 22 6 2.2441 -14.4103 1.1889 23 6 3.0379 -15.5420 1.1888 24 6 3.4350 -16.1077 -0.0083 25 6 3.0433 -15.5382 -1.2055 26 6 2.2455 -14.4093 -1.2054 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8880 30 1 2.8712 -3.6047 0.8890 31 1 2.8726 -3.6040 -0.8910 32 1 0.5427 -4.9308 -0.0039 33 1 0.5427 -7.2652 -0.0053 34 1 2.8712 -8.5922 0.8864 35 1 2.8725 -8.5913 -0.8936 36 1 0.6253 -9.6385 -0.8966 37 1 0.6233 -9.6398 0.8834 38 1 2.6419 -11.0805 0.8837 39 1 2.6433 -11.0788 -0.8962 40 1 1.9338 -13.9683 2.1242 41 1 3.3474 -15.9845 2.1241 42 1 4.0548 -16.9922 -0.0083 43 1 3.3572 -15.9776 -2.1408 44 1 1.9363 -13.9666 -2.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273094496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -116.305797 kcal Electronic energy + Delta-G solvation = -25324.281304 eV Core-core repulsion = 21367.362330 eV Total energy + Delta-G solvation = -3956.918975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97516 -40.02442 -38.20372 -37.30389 -37.02697 -36.34431 -34.82869 -33.83945 -32.29778 -31.98277 -31.36641 -27.90868 -26.30912 -24.29701 -23.70138 -23.10594 -22.73357 -21.97204 -20.03523 -19.40147 -18.92391 -18.40350 -17.73318 -17.35910 -16.94704 -16.82311 -16.74116 -16.47598 -16.14588 -15.62397 -15.49418 -15.26650 -15.17986 -14.96036 -14.47309 -14.25582 -14.07650 -13.76680 -13.70814 -13.22320 -13.19793 -13.19758 -13.09683 -13.04182 -12.90686 -12.52083 -12.24837 -12.20047 -12.09390 -11.89839 -11.67656 -11.54091 -11.45458 -11.19115 -10.58450 -10.36811 -10.33653 -10.02951 -9.70408 -8.22120 -6.32454 -0.99378 -0.16438 0.31298 1.43393 1.45791 1.53578 1.74664 1.89998 2.17626 2.42735 2.47170 2.91324 3.12745 3.13059 3.32495 3.68709 3.73115 3.83279 3.88873 3.97340 4.12114 4.29122 4.40267 4.49399 4.49883 4.49920 4.54486 4.70546 4.72628 4.88664 4.91932 4.97444 4.98861 5.10072 5.28753 5.33035 5.40453 5.49182 5.53680 5.61619 5.80687 5.88008 6.06201 6.19071 6.80616 7.14159 7.36833 7.60745 8.89476 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035006 B = 0.001455 C = 0.001432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.678400 B =19233.739714 C =19545.119248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.697 3.303 13 O -0.640 6.640 14 N -0.737 5.737 15 C 0.144 3.856 16 C -0.131 4.131 17 C -0.586 4.586 18 S 2.506 3.494 19 O -0.970 6.970 20 O -0.970 6.970 21 C -0.669 4.669 22 C -0.043 4.043 23 C -0.148 4.148 24 C -0.069 4.069 25 C -0.148 4.148 26 C -0.043 4.043 27 H 0.265 0.735 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.407 0.593 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 -36.128 -0.026 36.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.036 3.964 11 N -0.389 5.389 12 C 0.397 3.603 13 O -0.522 6.522 14 N -0.395 5.395 15 C 0.019 3.981 16 C -0.170 4.170 17 C -0.718 4.718 18 S 2.691 3.309 19 O -0.967 6.967 20 O -0.967 6.967 21 C -0.757 4.757 22 C -0.062 4.062 23 C -0.166 4.166 24 C -0.087 4.087 25 C -0.166 4.166 26 C -0.062 4.062 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.243 0.757 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.667 -36.034 -0.026 36.335 hybrid contribution 0.143 0.818 0.000 0.830 sum 4.810 -35.216 -0.026 35.543 Atomic orbital electron populations 1.70049 1.07531 1.28023 1.50953 1.25860 0.95785 1.03054 0.94404 0.85502 0.78295 0.78147 0.79115 1.19350 1.20631 1.19360 1.21448 0.93634 0.91929 1.51636 0.92248 1.19137 0.94274 0.91688 0.96389 1.21069 0.94602 0.81119 0.99620 1.45234 1.10459 1.04492 1.78721 1.16158 0.85150 0.81286 0.77741 1.90859 1.13705 1.87371 1.60253 1.44977 1.10539 1.03849 1.80129 1.21176 0.94056 0.79976 1.02860 1.21605 0.98446 0.90957 1.06006 1.30115 1.15815 1.10501 1.15385 1.04906 0.76288 0.76394 0.73315 1.93537 1.70920 1.86753 1.45494 1.93537 1.70884 1.86743 1.45543 1.30432 1.21780 1.23267 1.00179 1.21271 0.92848 0.95225 0.96872 1.21697 0.98553 0.96313 1.00074 1.21940 0.95712 0.98782 0.92234 1.21698 0.98533 0.96328 1.00073 1.21270 0.92838 0.95243 0.96871 0.92582 0.97273 0.97279 0.93802 0.93811 0.75713 0.75096 0.91352 0.91363 0.88258 0.88254 0.81696 0.81690 0.83372 0.82789 0.82494 0.82785 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.14 5.09 29.85 0.15 1.30 16 10 C 0.16 6.95 5.61 86.38 0.48 7.44 16 11 N -0.73 -25.48 5.56 -478.52 -2.66 -28.14 16 12 C 0.70 23.47 8.57 179.05 1.53 25.00 16 13 O -0.64 -27.01 16.34 -3.98 -0.07 -27.07 16 14 N -0.74 -16.49 5.56 -478.53 -2.66 -19.15 16 15 C 0.14 2.54 5.67 86.38 0.49 3.03 16 16 C -0.13 -1.44 5.34 30.59 0.16 -1.28 16 17 C -0.59 -4.35 5.98 71.98 0.43 -3.92 16 18 S 2.51 35.09 5.16 -56.49 -0.29 34.80 16 19 O -0.97 -19.78 17.13 -127.65 -2.19 -21.97 16 20 O -0.97 -19.78 17.12 -127.65 -2.19 -21.97 16 21 C -0.67 -8.74 5.66 22.27 0.13 -8.61 16 22 C -0.04 -0.51 9.47 22.27 0.21 -0.30 16 23 C -0.15 -1.28 10.05 22.27 0.22 -1.06 16 24 C -0.07 -0.50 10.05 22.27 0.22 -0.27 16 25 C -0.15 -1.28 10.05 22.27 0.22 -1.06 16 26 C -0.04 -0.51 9.47 22.27 0.21 -0.30 16 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.41 11.87 8.49 -92.71 -0.79 11.08 16 33 H 0.41 6.60 8.49 -92.71 -0.79 5.81 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.17 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.15 1.43 7.57 -2.91 -0.02 1.41 16 41 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 43 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 44 H 0.15 1.43 7.57 -2.91 -0.02 1.41 16 Total: -1.00 -83.76 390.34 -3.13 -86.89 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.55 Total: 14.55 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 5.17 Total: -9.56 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.04 Total: -101.25 kcal Atomic # 8 Polarization: -66.57 SS G_CDS: -4.44 Total: -71.01 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: 35.09 SS G_CDS: -0.29 Total: 34.80 kcal Total: -83.76 -3.13 -86.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273094496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.418 kcal (2) G-P(sol) polarization free energy of solvation -83.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds