Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37830 * 120.09408 * 2 1 4 4 C 1.38456 * 120.18792 * 179.97438 * 3 2 1 5 5 C 1.38497 * 120.38231 * 0.04109 * 4 3 2 6 6 S 1.76211 * 119.89989 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.39756 * 217.16743 * 6 5 4 8 8 O 1.42092 * 106.40174 * 350.08818 * 6 5 4 9 9 N 1.65599 * 107.21461 * 103.62982 * 6 5 4 10 10 C 1.46504 * 120.00043 * 293.71734 * 9 6 5 11 11 C 1.53002 * 109.47145 * 52.12037 * 10 9 6 12 12 C 1.52992 * 109.47385 * 172.12241 * 10 9 6 13 13 C 1.53002 * 109.46884 * 292.12063 * 10 9 6 14 14 C 1.37779 * 120.19305 * 359.70110 * 5 4 3 15 15 C 1.40055 * 120.09831 * 179.97438 * 2 1 3 16 16 C 1.46978 * 120.18740 * 359.97438 * 15 2 1 17 17 O 1.35176 * 119.99780 * 173.54126 * 16 15 2 18 18 N 1.32517 * 120.00146 * 353.53479 * 16 15 2 19 19 C 1.32773 * 120.00214 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99629 * 359.97438 * 19 18 16 21 21 C 1.40519 * 120.00257 * 179.72962 * 19 18 16 22 22 N 1.30719 * 119.99921 * 0.27474 * 21 19 18 23 23 Si 1.86800 * 120.00244 * 180.27607 * 21 19 18 24 24 H 1.48498 * 109.47050 * 59.99564 * 23 21 19 25 25 H 1.48493 * 109.47394 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46857 * 299.99782 * 23 21 19 27 27 H 1.08998 * 109.46983 * 262.86909 * 1 2 3 28 28 H 1.09002 * 109.47015 * 22.87551 * 1 2 3 29 29 H 1.09007 * 109.46805 * 142.87054 * 1 2 3 30 30 H 1.08001 * 119.90993 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.80464 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00122 * 113.71816 * 9 6 5 33 33 H 1.08995 * 109.47386 * 51.79388 * 11 10 9 34 34 H 1.08993 * 109.47030 * 171.80158 * 11 10 9 35 35 H 1.09008 * 109.46812 * 291.79556 * 11 10 9 36 36 H 1.08999 * 109.47392 * 59.99552 * 12 10 9 37 37 H 1.08998 * 109.47384 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47154 * 299.99834 * 12 10 9 39 39 H 1.09000 * 109.47494 * 69.16855 * 13 10 9 40 40 H 1.09000 * 109.47175 * 189.16980 * 13 10 9 41 41 H 1.08996 * 109.47421 * 309.16800 * 13 10 9 42 42 H 1.08005 * 120.10045 * 180.27566 * 14 5 4 43 43 H 0.96698 * 113.99991 * 359.97438 * 17 16 15 44 44 H 0.96998 * 119.99702 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1925 0.0000 4 6 3.5827 1.1948 0.0005 5 6 4.2851 0.0012 0.0002 6 16 6.0472 0.0189 0.0002 7 8 6.4592 -1.0631 -0.8236 8 8 6.4349 1.3657 -0.2341 9 7 6.5410 -0.3493 1.5374 10 6 6.2610 0.5760 2.6381 11 6 4.7703 0.9207 2.6480 12 6 6.6412 -0.0814 3.9663 13 6 7.0791 1.8551 2.4496 14 6 3.6103 -1.2000 0.0056 15 6 2.2094 -1.2117 0.0005 16 6 1.4809 -2.4882 0.0017 17 8 2.1561 -3.6519 -0.1295 18 7 0.1621 -2.4984 0.1314 19 6 -0.4961 -3.6515 0.1319 20 1 0.0433 -4.5812 0.0262 21 6 -1.8939 -3.6626 0.2752 22 7 -2.5468 -2.5374 0.4026 23 14 -2.8191 -5.2854 0.2837 24 1 -2.3363 -6.1245 1.4097 25 1 -4.2720 -5.0260 0.4477 26 1 -2.5843 -5.9957 -0.9992 27 1 -0.3633 -0.1276 1.0197 28 1 -0.3633 0.9469 -0.3995 29 1 -0.3633 -0.8194 -0.6204 30 1 1.6582 2.1279 -0.0004 31 1 4.1180 2.1328 0.0010 32 1 7.0156 -1.1776 1.7090 33 1 4.1847 0.0016 2.6354 34 1 4.5349 1.4894 3.5475 35 1 4.5295 1.5170 1.7678 36 1 7.7031 -0.3270 3.9593 37 1 6.4333 0.6073 4.7852 38 1 6.0584 -0.9927 4.1006 39 1 6.6973 2.4074 1.5909 40 1 6.9985 2.4730 3.3440 41 1 8.1241 1.5964 2.2798 42 1 4.1595 -2.1299 0.0098 43 1 3.1129 -3.5435 -0.2183 44 1 -3.5117 -2.5451 0.5019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330465002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -82.599952 kcal Electronic energy + Delta-G solvation = -28477.374626 eV Core-core repulsion = 24521.917246 eV Total energy + Delta-G solvation = -3955.457379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.96493 -38.02274 -36.78470 -36.66973 -35.59582 -34.54356 -32.74204 -31.40841 -30.97866 -30.34266 -27.49908 -27.27288 -26.43215 -25.57136 -22.54132 -21.20193 -20.61825 -20.05386 -18.88079 -18.03352 -17.50079 -17.26046 -16.07359 -15.87578 -15.23451 -15.05222 -14.73955 -14.46990 -14.19701 -13.79435 -13.72927 -13.46035 -13.38221 -13.06194 -12.68846 -12.44844 -12.28775 -12.25008 -12.08850 -11.94507 -11.87630 -11.70743 -11.59980 -11.57702 -11.50137 -11.39550 -11.28798 -11.09111 -11.01376 -10.80371 -10.55498 -10.34810 -10.11469 -10.03660 -9.48736 -8.80133 -8.37192 -7.96844 -7.72911 -7.35359 -4.36411 0.70602 1.50545 1.80159 2.75692 2.82480 2.85795 3.19322 3.51990 3.57349 3.95203 4.35907 4.63651 4.70058 4.85633 4.94679 5.24691 5.34406 5.35277 5.46501 5.48188 5.49477 5.60495 5.69047 5.79798 5.84556 5.91738 5.94392 5.98325 6.08049 6.16024 6.36231 6.38433 6.41204 6.41688 6.55706 6.66321 6.70921 6.90332 6.93704 7.04120 7.20631 7.47852 7.57374 7.68080 7.86005 8.34363 9.22355 9.55261 10.18613 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.003162 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.817492 B = 8853.377046 C = 8994.131947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.048 4.048 3 C -0.126 4.126 4 C -0.088 4.088 5 C -0.650 4.650 6 S 2.696 3.304 7 O -0.971 6.971 8 O -0.966 6.966 9 N -1.112 6.112 10 C 0.177 3.823 11 C -0.194 4.194 12 C -0.149 4.149 13 C -0.177 4.177 14 C -0.078 4.078 15 C 0.009 3.991 16 C 0.003 3.997 17 O -0.521 6.521 18 N -0.311 5.311 19 C -0.219 4.219 20 H 0.075 0.925 21 C 0.064 3.936 22 N -0.729 5.729 23 Si 0.938 3.062 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.258 1.258 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.414 0.586 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.362 0.638 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 5.245 5.977 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.050 4.050 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.740 4.740 6 S 2.789 3.211 7 O -0.961 6.961 8 O -0.956 6.956 9 N -0.870 5.870 10 C 0.089 3.911 11 C -0.252 4.252 12 C -0.208 4.208 13 C -0.235 4.235 14 C -0.100 4.100 15 C 0.005 3.995 16 C -0.184 4.184 17 O -0.320 6.320 18 N -0.036 5.036 19 C -0.378 4.378 20 H 0.092 0.908 21 C -0.164 4.164 22 N -0.351 5.351 23 Si 0.760 3.240 24 H -0.182 1.182 25 H -0.195 1.195 26 H -0.182 1.182 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.135 0.865 43 H 0.211 0.789 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.821 6.047 5.392 11.977 hybrid contribution 0.038 -1.657 0.351 1.694 sum 8.859 4.390 5.743 11.434 Atomic orbital electron populations 1.21059 0.89447 1.01455 1.03805 1.20238 0.97135 0.91397 0.96244 1.20889 0.93690 0.97324 1.02573 1.20375 0.94438 0.95378 1.00687 1.30062 1.24381 0.99528 1.20037 1.01577 0.74246 0.73392 0.71898 1.93568 1.82080 1.55580 1.64889 1.93510 1.81807 1.36343 1.83907 1.55710 1.73099 1.32322 1.25896 1.20133 0.95206 0.88985 0.86796 1.22902 0.94311 1.03653 1.04304 1.22055 1.01787 1.01377 0.95534 1.22568 1.00501 0.96850 1.03596 1.20341 0.93912 0.95148 1.00614 1.18523 0.91226 0.92149 0.97563 1.20243 0.88097 0.81887 1.28129 1.84716 1.21906 1.31600 1.93741 1.68169 1.01938 1.28679 1.04771 1.20691 0.91302 0.92031 1.33744 0.90783 1.26543 0.97715 0.99528 0.92578 1.69661 1.10529 1.28764 1.26185 0.85822 0.77719 0.79753 0.80744 1.18210 1.19499 1.18165 0.91246 0.95088 0.86943 0.86538 0.85583 0.75180 0.90805 0.90961 0.90249 0.92083 0.91193 0.91716 0.89453 0.91809 0.92198 0.86497 0.78913 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 8.58 36.01 0.31 -1.85 16 2 C -0.05 -0.99 5.93 -104.09 -0.62 -1.61 16 3 C -0.13 -2.23 9.66 -39.65 -0.38 -2.61 16 4 C -0.09 -1.47 6.89 -39.41 -0.27 -1.74 16 5 C -0.65 -11.08 3.95 -39.65 -0.16 -11.23 16 6 S 2.70 40.99 5.39 -107.50 -0.58 40.41 16 7 O -0.97 -17.43 17.69 -57.17 -1.01 -18.45 16 8 O -0.97 -15.79 14.18 -57.17 -0.81 -16.60 16 9 N -1.11 -12.98 5.54 0.54 0.00 -12.97 16 10 C 0.18 1.90 1.14 -131.82 -0.15 1.75 16 11 C -0.19 -2.33 6.96 37.16 0.26 -2.07 16 12 C -0.15 -1.27 8.57 37.15 0.32 -0.95 16 13 C -0.18 -1.86 8.13 37.16 0.30 -1.55 16 14 C -0.08 -1.49 8.96 -39.06 -0.35 -1.84 16 15 C 0.01 0.19 5.88 -104.98 -0.62 -0.43 16 16 C 0.00 0.07 7.82 -13.72 -0.11 -0.04 16 17 O -0.52 -12.30 12.26 -17.22 -0.21 -12.51 16 18 N -0.31 -8.14 5.94 -10.40 -0.06 -8.20 16 19 C -0.22 -5.64 9.59 -16.29 -0.16 -5.80 16 20 H 0.07 1.94 6.98 -52.49 -0.37 1.57 16 21 C 0.06 1.46 5.53 -17.17 -0.09 1.36 16 22 N -0.73 -16.94 13.59 55.58 0.76 -16.19 16 23 Si 0.94 16.92 29.57 -169.99 -5.03 11.89 16 24 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 25 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 26 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 29 H 0.11 2.75 5.70 -51.93 -0.30 2.45 16 30 H 0.12 1.77 8.05 -52.49 -0.42 1.35 16 31 H 0.13 1.85 6.95 -52.49 -0.36 1.48 16 32 H 0.41 3.95 8.62 -34.47 -0.30 3.65 16 33 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 34 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.08 1.02 3.91 -51.92 -0.20 0.82 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.07 6.00 -51.93 -0.31 0.76 16 40 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.12 2.00 6.25 -52.48 -0.33 1.67 16 43 H 0.36 6.92 6.67 45.56 0.30 7.23 16 44 H 0.29 5.96 8.29 -40.82 -0.34 5.63 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -30.68 363.19 -8.38 -39.06 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -5.19 Total: 16.68 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -1.72 Total: -28.60 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.70 Total: -37.36 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -2.03 Total: -47.56 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 40.99 SS G_CDS: -0.58 Total: 40.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.68 -8.38 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330465002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.544 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds