Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37830 * 120.09408 * 2 1 4 4 C 1.38456 * 120.18792 * 179.97438 * 3 2 1 5 5 C 1.38497 * 120.38231 * 0.04109 * 4 3 2 6 6 S 1.76211 * 119.89989 * 179.97438 * 5 4 3 7 7 O 1.42100 * 106.39756 * 217.16743 * 6 5 4 8 8 O 1.42092 * 106.40174 * 350.08818 * 6 5 4 9 9 N 1.65599 * 107.21461 * 103.62982 * 6 5 4 10 10 C 1.46504 * 120.00043 * 293.71734 * 9 6 5 11 11 C 1.53002 * 109.47145 * 52.12037 * 10 9 6 12 12 C 1.52992 * 109.47385 * 172.12241 * 10 9 6 13 13 C 1.53002 * 109.46884 * 292.12063 * 10 9 6 14 14 C 1.37779 * 120.19305 * 359.70110 * 5 4 3 15 15 C 1.40055 * 120.09831 * 179.97438 * 2 1 3 16 16 C 1.46978 * 120.18740 * 359.97438 * 15 2 1 17 17 O 1.35176 * 119.99780 * 173.54126 * 16 15 2 18 18 N 1.32517 * 120.00146 * 353.53479 * 16 15 2 19 19 C 1.32773 * 120.00214 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99629 * 359.97438 * 19 18 16 21 21 C 1.40519 * 120.00257 * 179.72962 * 19 18 16 22 22 N 1.30719 * 119.99921 * 0.27474 * 21 19 18 23 23 Si 1.86800 * 120.00244 * 180.27607 * 21 19 18 24 24 H 1.48498 * 109.47050 * 59.99564 * 23 21 19 25 25 H 1.48493 * 109.47394 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46857 * 299.99782 * 23 21 19 27 27 H 1.08998 * 109.46983 * 262.86909 * 1 2 3 28 28 H 1.09002 * 109.47015 * 22.87551 * 1 2 3 29 29 H 1.09007 * 109.46805 * 142.87054 * 1 2 3 30 30 H 1.08001 * 119.90993 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.80464 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00122 * 113.71816 * 9 6 5 33 33 H 1.08995 * 109.47386 * 51.79388 * 11 10 9 34 34 H 1.08993 * 109.47030 * 171.80158 * 11 10 9 35 35 H 1.09008 * 109.46812 * 291.79556 * 11 10 9 36 36 H 1.08999 * 109.47392 * 59.99552 * 12 10 9 37 37 H 1.08998 * 109.47384 * 179.97438 * 12 10 9 38 38 H 1.09004 * 109.47154 * 299.99834 * 12 10 9 39 39 H 1.09000 * 109.47494 * 69.16855 * 13 10 9 40 40 H 1.09000 * 109.47175 * 189.16980 * 13 10 9 41 41 H 1.08996 * 109.47421 * 309.16800 * 13 10 9 42 42 H 1.08005 * 120.10045 * 180.27566 * 14 5 4 43 43 H 0.96698 * 113.99991 * 359.97438 * 17 16 15 44 44 H 0.96998 * 119.99702 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1925 0.0000 4 6 3.5827 1.1948 0.0005 5 6 4.2851 0.0012 0.0002 6 16 6.0472 0.0189 0.0002 7 8 6.4592 -1.0631 -0.8236 8 8 6.4349 1.3657 -0.2341 9 7 6.5410 -0.3493 1.5374 10 6 6.2610 0.5760 2.6381 11 6 4.7703 0.9207 2.6480 12 6 6.6412 -0.0814 3.9663 13 6 7.0791 1.8551 2.4496 14 6 3.6103 -1.2000 0.0056 15 6 2.2094 -1.2117 0.0005 16 6 1.4809 -2.4882 0.0017 17 8 2.1561 -3.6519 -0.1295 18 7 0.1621 -2.4984 0.1314 19 6 -0.4961 -3.6515 0.1319 20 1 0.0433 -4.5812 0.0262 21 6 -1.8939 -3.6626 0.2752 22 7 -2.5468 -2.5374 0.4026 23 14 -2.8191 -5.2854 0.2837 24 1 -2.3363 -6.1245 1.4097 25 1 -4.2720 -5.0260 0.4477 26 1 -2.5843 -5.9957 -0.9992 27 1 -0.3633 -0.1276 1.0197 28 1 -0.3633 0.9469 -0.3995 29 1 -0.3633 -0.8194 -0.6204 30 1 1.6582 2.1279 -0.0004 31 1 4.1180 2.1328 0.0010 32 1 7.0156 -1.1776 1.7090 33 1 4.1847 0.0016 2.6354 34 1 4.5349 1.4894 3.5475 35 1 4.5295 1.5170 1.7678 36 1 7.7031 -0.3270 3.9593 37 1 6.4333 0.6073 4.7852 38 1 6.0584 -0.9927 4.1006 39 1 6.6973 2.4074 1.5909 40 1 6.9985 2.4730 3.3440 41 1 8.1241 1.5964 2.2798 42 1 4.1595 -2.1299 0.0098 43 1 3.1129 -3.5435 -0.2183 44 1 -3.5117 -2.5451 0.5019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330465002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -106.079185 kcal Electronic energy + Delta-G solvation = -28478.392762 eV Core-core repulsion = 24521.917246 eV Total energy + Delta-G solvation = -3956.475515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55187 -39.07630 -38.38496 -38.02332 -36.92116 -36.30449 -34.39273 -33.10193 -32.10539 -31.75675 -28.47698 -28.13116 -27.93138 -27.24092 -24.14690 -22.74831 -21.77721 -21.48498 -20.22041 -19.73576 -18.92187 -18.49858 -17.72035 -17.10311 -16.78876 -16.38580 -16.17640 -15.83987 -15.36871 -15.20355 -15.09569 -14.80978 -14.65610 -14.21655 -14.14987 -13.97429 -13.89543 -13.57006 -13.28772 -13.20208 -13.14950 -13.09131 -12.92679 -12.86798 -12.76162 -12.72780 -12.51664 -12.33194 -12.19043 -12.12406 -11.92555 -11.72731 -11.55283 -11.49139 -10.54722 -10.48833 -9.89556 -9.61081 -9.58263 -9.00935 -6.23148 -0.55084 -0.00652 0.25880 1.26825 1.32536 1.46841 1.87839 2.07594 2.09488 2.60960 2.85726 3.40460 3.51864 3.69247 3.80553 3.91910 3.99608 4.04223 4.11313 4.22613 4.34155 4.44027 4.58512 4.76752 4.78891 4.79766 4.85036 4.87252 4.93160 5.03882 5.08346 5.12152 5.13551 5.15957 5.27445 5.31759 5.33402 5.46697 5.55183 5.59236 5.75094 5.86151 5.96625 6.16536 6.17276 6.57222 7.49836 7.91020 8.39078 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.003162 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.817492 B = 8853.377046 C = 8994.131947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.060 4.060 3 C -0.124 4.124 4 C -0.064 4.064 5 C -0.656 4.656 6 S 2.719 3.281 7 O -0.997 6.997 8 O -0.971 6.971 9 N -1.099 6.099 10 C 0.173 3.827 11 C -0.197 4.197 12 C -0.147 4.147 13 C -0.178 4.178 14 C -0.070 4.070 15 C -0.021 4.021 16 C -0.013 4.013 17 O -0.535 6.535 18 N -0.332 5.332 19 C -0.279 4.279 20 H 0.054 0.946 21 C 0.031 3.969 22 N -0.765 5.765 23 Si 1.008 2.992 24 H -0.258 1.258 25 H -0.248 1.248 26 H -0.259 1.259 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.426 0.574 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.377 0.623 44 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.549 7.049 7.028 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.084 4.084 5 C -0.743 4.743 6 S 2.810 3.190 7 O -0.987 6.987 8 O -0.961 6.961 9 N -0.862 5.862 10 C 0.086 3.914 11 C -0.255 4.255 12 C -0.205 4.205 13 C -0.237 4.237 14 C -0.092 4.092 15 C -0.024 4.024 16 C -0.204 4.204 17 O -0.335 6.335 18 N -0.057 5.057 19 C -0.435 4.435 20 H 0.072 0.928 21 C -0.192 4.192 22 N -0.389 5.389 23 Si 0.826 3.174 24 H -0.182 1.182 25 H -0.171 1.171 26 H -0.183 1.183 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.228 0.772 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.719 7.850 6.441 14.765 hybrid contribution -0.141 -1.899 0.055 1.905 sum 10.578 5.951 6.495 13.766 Atomic orbital electron populations 1.20825 0.90261 1.01455 1.02128 1.20392 0.96895 0.92315 0.96675 1.21203 0.94291 0.97357 1.01402 1.20844 0.94214 0.96458 0.96894 1.30523 1.26064 0.98956 1.18796 1.00914 0.73011 0.72726 0.72358 1.93537 1.82036 1.56528 1.66628 1.93511 1.81306 1.36678 1.84569 1.55474 1.72443 1.33286 1.24969 1.20322 0.94518 0.89262 0.87328 1.22928 0.95009 1.02764 1.04848 1.22062 1.02644 1.01400 0.94440 1.22581 1.00519 0.96582 1.04006 1.20523 0.92845 0.96715 0.99087 1.18682 0.92518 0.91536 0.99618 1.20844 0.88438 0.83081 1.28021 1.84673 1.23237 1.31903 1.93730 1.68222 1.02714 1.28973 1.05807 1.20804 0.92959 0.91249 1.38447 0.92812 1.27395 0.97263 1.03180 0.91406 1.69660 1.11365 1.30515 1.27310 0.84843 0.77252 0.75032 0.80323 1.18232 1.17128 1.18346 0.93102 0.92460 0.90262 0.83315 0.82588 0.73715 0.92763 0.88961 0.91263 0.90658 0.89564 0.92138 0.91163 0.89542 0.91659 0.85215 0.77230 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.95 8.58 71.24 0.61 -3.34 16 2 C -0.06 -2.51 5.93 -19.52 -0.12 -2.62 16 3 C -0.12 -4.09 9.66 22.22 0.21 -3.87 16 4 C -0.06 -1.93 6.89 22.38 0.15 -1.78 16 5 C -0.66 -20.98 3.95 22.22 0.09 -20.89 16 6 S 2.72 75.98 5.39 -56.49 -0.30 75.67 16 7 O -1.00 -33.96 17.69 -128.00 -2.26 -36.22 16 8 O -0.97 -28.74 14.18 -128.00 -1.82 -30.55 16 9 N -1.10 -22.60 5.54 -152.21 -0.84 -23.44 16 10 C 0.17 3.14 1.14 3.60 0.00 3.14 16 11 C -0.20 -4.17 6.96 71.98 0.50 -3.67 16 12 C -0.15 -1.97 8.57 71.98 0.62 -1.35 16 13 C -0.18 -3.08 8.13 71.98 0.59 -2.49 16 14 C -0.07 -2.62 8.96 22.61 0.20 -2.42 16 15 C -0.02 -0.92 5.88 -20.10 -0.12 -1.04 16 16 C -0.01 -0.69 7.82 86.88 0.68 -0.02 16 17 O -0.54 -26.58 12.26 -84.55 -1.04 -27.62 16 18 N -0.33 -18.59 5.94 -299.82 -1.78 -20.37 16 19 C -0.28 -15.46 9.59 85.11 0.82 -14.64 16 20 H 0.05 3.06 6.98 -2.91 -0.02 3.04 16 21 C 0.03 1.48 5.53 85.41 0.47 1.95 16 22 N -0.77 -37.40 13.59 21.94 0.30 -37.10 16 23 Si 1.01 35.99 29.57 68.60 2.03 38.02 16 24 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 25 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 26 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 27 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 29 H 0.08 4.10 5.70 -2.38 -0.01 4.08 16 30 H 0.15 3.95 8.05 -2.91 -0.02 3.93 16 31 H 0.16 3.88 6.95 -2.91 -0.02 3.86 16 32 H 0.43 6.94 8.62 -96.75 -0.83 6.11 16 33 H 0.05 1.37 7.71 -2.39 -0.02 1.35 16 34 H 0.09 1.57 8.13 -2.39 -0.02 1.55 16 35 H 0.07 1.56 3.91 -2.38 -0.01 1.55 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.07 1.48 6.00 -2.39 -0.01 1.47 16 40 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.13 4.38 6.25 -2.91 -0.02 4.36 16 43 H 0.38 14.97 6.67 -74.06 -0.49 14.47 16 44 H 0.30 12.84 8.29 -92.71 -0.77 12.07 16 Total: -1.00 -70.43 363.19 -1.27 -71.70 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -0.27 Total: 42.95 kcal Atomic # 6 Polarization: -57.75 SS G_CDS: 4.71 Total: -53.04 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.32 Total: -80.91 kcal Atomic # 8 Polarization: -89.28 SS G_CDS: -5.12 Total: -94.40 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Atomic # 16 Polarization: 75.98 SS G_CDS: -0.30 Total: 75.67 kcal Total: -70.43 -1.27 -71.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330465002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.377 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds