Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48496 * 109.47107 * 275.00096 * 3 2 1 5 5 H 1.48505 * 109.47247 * 34.99404 * 3 2 1 6 6 H 1.48492 * 109.47281 * 154.99334 * 3 2 1 7 7 C 1.39889 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00040 * 149.28253 * 7 2 1 9 9 C 1.41159 * 120.00105 * 329.27892 * 7 2 1 10 10 C 1.40871 * 120.16466 * 164.39533 * 9 7 2 11 11 C 1.36375 * 119.83139 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16373 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83217 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99970 * 33.61822 * 13 12 11 15 15 O 1.21576 * 120.00066 * 5.10751 * 14 13 12 16 16 N 1.34773 * 119.99921 * 185.11072 * 14 13 12 17 17 C 1.46509 * 119.99913 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.46806 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00534 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99751 * 180.27426 * 18 17 16 21 21 C 1.39950 * 120.00099 * 174.91958 * 20 18 17 22 22 C 1.39280 * 120.49001 * 329.26726 * 21 20 18 23 23 C 1.38506 * 118.35869 * 179.73459 * 22 21 20 24 24 C 1.38272 * 119.23676 * 0.53224 * 23 22 21 25 25 N 1.31858 * 120.91942 * 359.72419 * 24 23 22 26 26 C 1.31825 * 121.79398 * 359.97438 * 25 24 23 27 27 C 1.39480 * 120.33654 * 0.24691 * 12 11 10 28 28 C 1.36375 * 120.16461 * 359.44972 * 27 12 11 29 29 H 0.96994 * 119.99714 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.08423 * 0.02562 * 10 9 7 31 31 H 1.07991 * 119.91532 * 180.02562 * 11 10 9 32 32 H 0.96997 * 120.00220 * 213.62638 * 13 12 11 33 33 H 0.97000 * 119.99999 * 0.02562 * 16 14 13 34 34 H 1.09003 * 109.46568 * 59.99999 * 17 16 14 35 35 H 1.08991 * 109.47032 * 299.99725 * 17 16 14 36 36 H 0.96999 * 119.99810 * 354.92702 * 20 18 17 37 37 H 1.07996 * 120.81892 * 359.97438 * 22 21 20 38 38 H 1.08003 * 120.38164 * 180.25728 * 23 22 21 39 39 H 1.07993 * 119.54226 * 179.75065 * 24 23 22 40 40 H 1.07996 * 119.66496 * 179.97438 * 26 25 24 41 41 H 1.08005 * 119.91565 * 179.70166 * 27 12 11 42 42 H 1.08002 * 120.08527 * 180.24873 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4971 2.6199 0.8029 6 1 3.5891 1.4120 0.5918 7 6 2.0083 -1.2115 0.0005 8 1 2.9747 -1.2773 -0.4772 9 6 1.4511 -2.3479 0.6256 10 6 1.9713 -3.6294 0.3580 11 6 1.4275 -4.7227 0.9652 12 6 0.3584 -4.5744 1.8488 13 7 -0.1919 -5.6955 2.4645 14 6 0.5951 -6.7400 2.7902 15 8 1.7983 -6.6671 2.6320 16 7 0.0483 -7.8653 3.2912 17 6 0.9039 -9.0006 3.6458 18 6 0.0526 -10.1238 4.1793 19 8 -1.1504 -9.9895 4.2554 20 7 0.6286 -11.2757 4.5766 21 6 -0.1474 -12.2777 5.1702 22 6 -1.2713 -11.9479 5.9239 23 6 -2.0105 -12.9750 6.4869 24 6 -1.6058 -14.2830 6.2934 25 7 -0.5334 -14.5617 5.5786 26 6 0.1947 -13.6150 5.0206 27 6 -0.1658 -3.3094 2.1143 28 6 0.3717 -2.2062 1.5194 29 1 -0.4849 0.8400 0.0004 30 1 2.7988 -3.7457 -0.3262 31 1 1.8255 -5.7057 0.7614 32 1 -1.1418 -5.7248 2.6589 33 1 -0.9117 -7.9237 3.4171 34 1 1.6184 -8.6924 4.4091 35 1 1.4416 -9.3405 2.7608 36 1 1.5810 -11.4102 4.4511 37 1 -1.5614 -10.9169 6.0625 38 1 -2.8903 -12.7566 7.0739 39 1 -2.1762 -15.0874 6.7335 40 1 1.0668 -13.8823 4.4425 41 1 -0.9967 -3.2030 2.7960 42 1 -0.0326 -1.2269 1.7291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338244792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -17.352403 kcal Electronic energy + Delta-G solvation = -26811.667012 eV Core-core repulsion = 22755.887779 eV Total energy + Delta-G solvation = -4055.779234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.05403 -41.33705 -40.29212 -39.15290 -36.46272 -36.23882 -35.48331 -34.73283 -33.15796 -31.63507 -31.38281 -30.76187 -28.69338 -26.54565 -24.92881 -24.24580 -23.41953 -22.61885 -21.75950 -21.66608 -19.86987 -19.25776 -19.05040 -18.23352 -17.92984 -17.77140 -17.24037 -17.03131 -16.66174 -16.28073 -16.01743 -15.72148 -15.67798 -15.05148 -14.96463 -14.83716 -14.48549 -14.42612 -14.11993 -13.95501 -13.81785 -13.72667 -13.24142 -13.10999 -12.78497 -12.68192 -12.32674 -12.11210 -11.92594 -11.52259 -11.48447 -11.32731 -11.02086 -10.72021 -10.49820 -10.40598 -10.23475 -9.43926 -9.38944 -8.93725 -8.69985 -6.18560 -0.01699 0.25430 0.88150 1.18265 1.30646 1.37120 1.39842 1.48062 1.58205 2.05602 2.16592 2.21733 2.69992 2.83487 3.30924 3.39425 3.62610 3.77362 3.84049 3.96405 4.10018 4.29647 4.31949 4.34638 4.42178 4.53439 4.67049 4.94838 4.98896 5.10709 5.12820 5.17949 5.18155 5.27336 5.30909 5.48686 5.65170 5.72837 5.77419 6.05976 6.13104 6.14247 6.23011 6.39003 6.66209 6.80868 6.93010 6.95764 7.03381 7.09769 7.62460 8.22293 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.048396 B = 0.001575 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.415653 B =17775.922842 C =18164.798882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.048 3.952 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.075 3.925 10 C -0.244 4.244 11 C -0.078 4.078 12 C 0.012 3.988 13 N -0.657 5.657 14 C 0.700 3.300 15 O -0.617 6.617 16 N -0.728 5.728 17 C 0.124 3.876 18 C 0.521 3.479 19 O -0.545 6.545 20 N -0.648 5.648 21 C 0.089 3.911 22 C -0.099 4.099 23 C -0.150 4.150 24 C 0.073 3.927 25 N -0.491 5.491 26 C 0.074 3.926 27 C -0.106 4.106 28 C -0.191 4.191 29 H 0.294 0.706 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.413 0.587 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.435 0.565 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.182 0.818 41 H 0.120 0.880 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -22.144 12.548 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.171 4.171 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.072 3.928 10 C -0.264 4.264 11 C -0.099 4.099 12 C -0.082 4.082 13 N -0.304 5.304 14 C 0.400 3.600 15 O -0.497 6.497 16 N -0.388 5.388 17 C -0.004 4.004 18 C 0.309 3.691 19 O -0.422 6.422 20 N -0.295 5.295 21 C -0.008 4.008 22 C -0.127 4.127 23 C -0.170 4.170 24 C -0.084 4.084 25 N -0.199 5.199 26 C -0.086 4.086 27 C -0.126 4.126 28 C -0.211 4.211 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.247 0.753 33 H 0.251 0.749 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.275 0.725 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.199 0.801 40 H 0.199 0.801 41 H 0.138 0.862 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.315 -22.721 12.314 26.055 hybrid contribution -0.386 1.577 -0.050 1.624 sum -3.701 -21.144 12.264 24.722 Atomic orbital electron populations 1.69939 1.09289 1.31294 1.31739 1.26763 0.95169 1.04536 0.90617 0.85322 0.79542 0.76052 0.79631 1.18413 1.18554 1.18568 1.19758 1.04696 0.94967 1.33213 0.90701 1.17945 0.91541 0.92425 0.90849 1.20668 1.05757 0.92692 1.07247 1.20357 0.96566 0.97603 0.95341 1.16901 1.02591 0.85521 1.03171 1.41840 1.11196 1.15084 1.62321 1.15916 0.84953 0.80672 0.78447 1.90900 1.14298 1.82813 1.61706 1.44560 1.11653 1.12929 1.69666 1.20947 0.92273 0.83767 1.03378 1.20765 0.88338 0.83524 0.76438 1.90714 1.15911 1.81005 1.54567 1.43135 1.13244 1.14170 1.58958 1.18916 0.95399 0.89783 0.96709 1.21815 0.94840 1.01508 0.94577 1.22373 1.01315 0.93019 1.00321 1.23203 0.93058 0.96723 0.95451 1.67711 1.06606 1.36896 1.08716 1.22965 1.00721 0.86180 0.98696 1.20398 1.00770 0.90927 1.00503 1.20816 1.01198 0.97595 1.01500 0.89542 0.88890 0.87802 0.75265 0.74936 0.86672 0.86761 0.72454 0.84439 0.82169 0.80138 0.80106 0.86190 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.45 11.22 21.82 0.24 -40.21 16 2 C 0.05 2.39 4.91 85.23 0.42 2.81 16 3 Si 0.97 37.35 29.65 68.60 2.03 39.39 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.23 8.98 23.39 0.21 -27.02 16 8 H 0.07 4.00 8.00 -2.91 -0.02 3.97 16 9 C 0.08 4.17 5.64 -21.28 -0.12 4.05 16 10 C -0.24 -12.85 9.74 22.48 0.22 -12.63 16 11 C -0.08 -3.84 8.57 22.13 0.19 -3.65 16 12 C 0.01 0.53 6.29 38.56 0.24 0.77 16 13 N -0.66 -22.54 5.32 -316.79 -1.68 -24.22 16 14 C 0.70 23.27 8.29 179.05 1.48 24.75 16 15 O -0.62 -25.41 14.00 -3.95 -0.06 -25.46 16 16 N -0.73 -16.89 5.53 -482.30 -2.67 -19.56 16 17 C 0.12 2.05 6.16 85.63 0.53 2.58 16 18 C 0.52 8.16 7.68 87.66 0.67 8.83 16 19 O -0.55 -11.95 13.21 -3.05 -0.04 -11.99 16 20 N -0.65 -6.81 5.36 -303.19 -1.63 -8.44 16 21 C 0.09 1.26 6.35 38.24 0.24 1.50 16 22 C -0.10 -1.59 8.78 22.58 0.20 -1.39 16 23 C -0.15 -1.87 10.10 22.34 0.23 -1.64 16 24 C 0.07 0.92 11.18 84.70 0.95 1.87 16 25 N -0.49 -7.89 10.35 -195.33 -2.02 -9.92 16 26 C 0.07 0.98 11.12 84.84 0.94 1.92 16 27 C -0.11 -4.81 9.89 22.13 0.22 -4.59 16 28 C -0.19 -10.00 8.76 22.48 0.20 -9.80 16 29 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 30 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.10 4.98 6.40 -2.92 -0.02 4.96 16 32 H 0.41 11.00 8.83 -92.71 -0.82 10.18 16 33 H 0.41 8.56 7.46 -92.71 -0.69 7.87 16 34 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.44 1.47 8.81 -92.71 -0.82 0.65 16 37 H 0.14 2.48 6.32 -2.91 -0.02 2.47 16 38 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.11 5.76 6.01 -2.91 -0.02 5.74 16 Total: -1.00 -74.15 365.11 -0.21 -74.36 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -1.21 Total: 37.69 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 6.82 Total: -11.65 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -7.76 Total: -102.34 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.10 Total: -37.45 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.39 kcal Total: -74.15 -0.21 -74.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338244792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.008 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds