Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47176 * 300.00026 * 3 2 1 6 6 H 1.48498 * 109.46993 * 59.99782 * 3 2 1 7 7 C 1.37876 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99895 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47285 * 179.97438 * 9 7 2 11 11 C 1.46490 * 120.00245 * 275.00716 * 10 9 7 12 12 C 1.50706 * 109.46749 * 274.99536 * 11 10 9 13 13 C 1.38220 * 119.61941 * 94.73267 * 12 11 10 14 14 C 1.38634 * 119.16442 * 179.70914 * 13 12 11 15 15 C 1.38677 * 118.41461 * 0.55070 * 14 13 12 16 16 C 1.38179 * 119.16330 * 359.72760 * 15 14 13 17 17 N 1.31855 * 119.61947 * 274.99853 * 12 11 10 18 18 S 1.65602 * 119.99652 * 95.00062 * 10 9 7 19 19 O 1.42108 * 104.27708 * 333.93459 * 18 10 9 20 20 O 1.42094 * 104.27783 * 206.07487 * 18 10 9 21 21 C 1.81403 * 104.44967 * 90.00189 * 18 10 9 22 22 C 1.52995 * 109.47062 * 179.97438 * 21 18 10 23 23 H 1.08999 * 110.83239 * 308.64978 * 22 21 18 24 24 C 1.54813 * 110.90744 * 184.99996 * 22 21 18 25 25 C 1.54098 * 104.30472 * 220.98959 * 24 22 21 26 26 O 1.43744 * 107.29564 * 357.90152 * 25 24 22 27 27 C 1.44373 * 106.97248 * 26.51652 * 26 25 24 28 28 H 0.96998 * 120.00626 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47204 * 59.99931 * 9 7 2 30 30 H 1.09000 * 109.47209 * 300.00173 * 9 7 2 31 31 H 1.08998 * 109.47764 * 34.99612 * 11 10 9 32 32 H 1.09003 * 109.47514 * 155.00203 * 11 10 9 33 33 H 1.08003 * 120.41810 * 359.97438 * 13 12 11 34 34 H 1.07998 * 120.79062 * 180.25458 * 14 13 12 35 35 H 1.07996 * 120.41395 * 179.70778 * 15 14 13 36 36 H 1.08000 * 119.61206 * 179.97438 * 16 15 14 37 37 H 1.08993 * 109.46613 * 59.99869 * 21 18 10 38 38 H 1.09005 * 109.47066 * 300.00157 * 21 18 10 39 39 H 1.09002 * 110.48794 * 102.24504 * 24 22 21 40 40 H 1.09002 * 110.48657 * 339.72926 * 24 22 21 41 41 H 1.08999 * 109.88182 * 117.33024 * 25 24 22 42 42 H 1.08997 * 109.87763 * 238.47782 * 25 24 22 43 43 H 1.09002 * 110.62093 * 78.43762 * 27 26 25 44 44 H 1.09000 * 110.61773 * 201.43358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7633 -4.0975 -1.2632 12 6 1.8180 -5.0951 -1.8817 13 6 0.8990 -4.6723 -2.8235 14 6 0.0380 -5.5991 -3.3908 15 6 0.1265 -6.9204 -2.9792 16 6 1.0669 -7.2679 -2.0283 17 7 1.8738 -6.3602 -1.5143 18 16 2.6461 -4.3232 1.4293 19 8 2.4609 -3.3025 2.4005 20 8 3.9353 -4.8610 1.1684 21 6 1.4371 -5.6546 1.6667 22 6 1.7438 -6.3957 2.9696 23 1 2.7904 -6.6981 3.0064 24 6 0.8091 -7.6175 3.1434 25 6 0.4334 -7.5998 4.6378 26 8 1.1383 -6.5028 5.2428 27 6 1.3744 -5.5291 4.2033 28 1 -0.4851 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.9027 -3.2583 -1.9447 32 1 3.7243 -4.5761 -1.0749 33 1 0.8550 -3.6339 -3.1170 34 1 -0.6875 -5.2983 -4.1321 35 1 -0.5316 -7.6682 -3.3964 36 1 1.1417 -8.2947 -1.7021 37 1 1.4952 -6.3514 0.8305 38 1 0.4344 -5.2302 1.7170 39 1 1.3350 -8.5388 2.8931 40 1 -0.0816 -7.5075 2.5248 41 1 -0.6414 -7.4558 4.7482 42 1 0.7338 -8.5369 5.1065 43 1 0.4717 -4.9504 4.0072 44 1 2.2014 -4.8724 4.4732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341440421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -100.638582 kcal Electronic energy + Delta-G solvation = -28709.050671 eV Core-core repulsion = 24752.811078 eV Total energy + Delta-G solvation = -3956.239593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.08596 -40.48547 -38.14283 -37.48140 -36.89719 -34.89826 -34.69127 -33.33098 -32.42414 -30.91182 -29.36788 -27.91471 -26.98078 -24.64313 -24.13173 -23.69828 -22.83545 -21.79451 -19.85114 -18.82373 -18.58202 -17.99101 -17.53730 -17.39498 -17.14796 -16.93204 -16.55245 -16.43542 -16.25755 -16.15569 -15.49914 -15.08357 -14.75039 -14.45751 -14.20469 -14.14403 -13.97573 -13.75831 -13.60753 -13.37631 -13.30512 -13.11323 -13.07521 -12.90548 -12.67217 -12.50723 -12.43481 -12.39926 -12.25163 -11.96788 -11.79097 -11.76507 -11.40149 -10.76151 -10.73399 -10.57097 -10.43423 -9.93415 -9.77969 -8.18898 -6.28671 -0.69738 0.19666 0.42081 1.38357 1.42026 1.52861 1.76359 2.42465 2.73366 2.90814 2.96299 3.11126 3.14792 3.31303 3.39280 3.55376 3.65801 3.80094 4.00744 4.06492 4.10979 4.15981 4.21795 4.29201 4.30765 4.34875 4.52127 4.63762 4.68156 4.73191 4.76439 4.81515 4.86958 4.93466 4.96042 5.09157 5.18567 5.28565 5.35821 5.47007 5.67955 5.76550 5.86063 5.87829 6.13251 6.78751 7.07717 7.39588 8.88869 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008411 B = 0.005389 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3328.356793 B = 5194.222966 C = 7484.352085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.983 5.983 11 C 0.165 3.835 12 C 0.093 3.907 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.163 4.163 16 C 0.087 3.913 17 N -0.506 5.506 18 S 2.593 3.407 19 O -0.982 6.982 20 O -0.988 6.988 21 C -0.598 4.598 22 C -0.116 4.116 23 H 0.099 0.901 24 C -0.133 4.133 25 C 0.035 3.965 26 O -0.393 6.393 27 C 0.030 3.970 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.017 0.983 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.159 0.841 38 H 0.140 0.860 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -19.393 -3.964 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.149 3.851 10 N -0.819 5.819 11 C 0.039 3.961 12 C -0.045 4.045 13 C -0.182 4.182 14 C -0.103 4.103 15 C -0.183 4.183 16 C -0.070 4.070 17 N -0.216 5.216 18 S 2.691 3.309 19 O -0.972 6.972 20 O -0.978 6.978 21 C -0.730 4.730 22 C -0.136 4.136 23 H 0.117 0.883 24 C -0.172 4.172 25 C -0.041 4.041 26 O -0.313 6.313 27 C -0.047 4.047 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.202 0.798 37 H 0.177 0.823 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.401 -19.181 -2.593 19.504 hybrid contribution -0.795 1.410 -0.995 1.900 sum -3.196 -17.771 -3.588 18.409 Atomic orbital electron populations 1.69995 1.06991 1.27895 1.51427 1.25627 0.95710 1.02226 0.94706 0.85619 0.78974 0.79804 0.77988 1.19694 1.19422 1.20763 1.21799 0.93417 0.92246 1.50516 0.93198 1.18661 0.86997 0.82345 0.97067 1.57292 1.59628 1.44821 1.20148 1.20136 0.94666 0.95402 0.85910 1.21615 0.96512 0.91674 0.94736 1.22159 0.96459 1.01691 0.97892 1.21969 0.97062 0.93212 0.98044 1.22516 1.00033 0.97337 0.98400 1.23327 0.90724 0.99570 0.93406 1.67425 1.25195 1.01836 1.27168 1.05223 0.76315 0.75893 0.73478 1.93578 1.87219 1.55475 1.60957 1.93477 1.38049 1.81758 1.84528 1.30481 1.17937 1.17677 1.06892 1.22554 1.02769 0.97371 0.90912 0.88303 1.22991 0.99857 0.97415 0.96912 1.23491 0.97237 0.90717 0.92667 1.88853 1.77952 1.31049 1.33426 1.23976 1.01947 0.91955 0.86849 0.92453 0.94706 0.96494 0.88261 0.88672 0.85065 0.82378 0.81300 0.79791 0.82265 0.84206 0.87594 0.88762 0.91011 0.87460 0.90991 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.07 13.29 21.45 0.28 -52.79 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.54 -30.29 9.38 25.60 0.24 -30.05 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.27 13.49 5.01 85.63 0.43 13.92 16 10 N -0.98 -41.09 2.68 -523.91 -1.41 -42.49 16 11 C 0.17 5.96 5.96 85.64 0.51 6.47 16 12 C 0.09 2.81 6.36 42.55 0.27 3.08 16 13 C -0.16 -4.34 9.63 22.36 0.22 -4.12 16 14 C -0.08 -1.51 10.18 22.47 0.23 -1.28 16 15 C -0.16 -2.60 10.11 22.36 0.23 -2.38 16 16 C 0.09 1.66 11.18 84.67 0.95 2.61 16 17 N -0.51 -13.69 8.72 -183.89 -1.60 -15.29 16 18 S 2.59 104.77 5.24 -56.49 -0.30 104.47 16 19 O -0.98 -47.64 16.05 -127.65 -2.05 -49.69 16 20 O -0.99 -42.52 16.53 -127.65 -2.11 -44.63 16 21 C -0.60 -17.24 5.56 71.98 0.40 -16.84 16 22 C -0.12 -3.00 3.10 -9.41 -0.03 -3.03 16 23 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 24 C -0.13 -2.39 6.59 31.58 0.21 -2.18 16 25 C 0.04 0.67 7.70 72.35 0.56 1.22 16 26 O -0.39 -11.02 11.52 -148.98 -1.72 -12.74 16 27 C 0.03 0.88 6.43 72.75 0.47 1.35 16 28 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.03 1.71 8.02 -2.39 -0.02 1.69 16 30 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 31 H 0.10 3.54 8.01 -2.39 -0.02 3.52 16 32 H 0.10 3.44 6.82 -2.39 -0.02 3.42 16 33 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.16 4.13 6.52 -2.39 -0.02 4.11 16 38 H 0.14 3.79 7.99 -2.39 -0.02 3.77 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.46 7.86 -2.39 -0.02 1.44 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 2.13 7.93 -2.39 -0.02 2.11 16 44 H 0.09 2.86 7.79 -2.39 -0.02 2.84 16 Total: -1.00 -74.96 376.99 -0.74 -75.70 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.99 Total: 20.66 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 5.13 Total: -29.82 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -2.72 Total: -110.57 kcal Atomic # 8 Polarization: -101.18 SS G_CDS: -5.88 Total: -107.05 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 104.77 SS G_CDS: -0.30 Total: 104.47 kcal Total: -74.96 -0.74 -75.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341440421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.939 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds