Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86812 * 119.99892 * 2 1 4 4 H 1.48493 * 109.46928 * 269.99773 * 3 2 1 5 5 H 1.48493 * 109.46889 * 30.00153 * 3 2 1 6 6 H 1.48498 * 109.46890 * 149.99974 * 3 2 1 7 7 C 1.37878 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00041 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99614 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46686 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47396 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47404 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54243 * 68.37490 * 12 11 10 14 14 O 1.42099 * 110.54446 * 291.62402 * 12 11 10 15 15 N 1.65605 * 104.44927 * 179.97438 * 12 11 10 16 16 C 1.46498 * 119.99526 * 65.00515 * 15 12 11 17 17 H 1.08997 * 110.54260 * 337.61304 * 16 15 12 18 18 C 1.54807 * 110.48854 * 100.23257 * 16 15 12 19 19 C 1.54994 * 102.09494 * 97.79488 * 18 16 15 20 20 O 1.44380 * 103.49110 * 37.01885 * 19 18 16 21 21 C 1.43739 * 106.97820 * 319.94499 * 20 19 18 22 22 H 1.09004 * 109.87903 * 267.08704 * 21 20 19 23 23 C 1.50698 * 109.88141 * 145.93316 * 21 20 19 24 24 C 1.38674 * 120.41701 * 147.16599 * 23 21 20 25 25 C 1.38628 * 118.42093 * 180.02562 * 24 23 21 26 26 C 1.38233 * 119.15851 * 0.02562 * 25 24 23 27 27 N 1.31854 * 120.76361 * 0.02562 * 26 25 24 28 28 C 1.31883 * 121.72576 * 359.70010 * 27 26 25 29 29 H 0.97007 * 119.99934 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47574 * 60.00824 * 9 7 2 31 31 H 1.08996 * 109.47663 * 299.99672 * 9 7 2 32 32 H 1.08999 * 109.47399 * 60.00147 * 10 9 7 33 33 H 1.09005 * 109.47230 * 300.00325 * 10 9 7 34 34 H 1.08999 * 109.46896 * 59.99631 * 11 10 9 35 35 H 1.09005 * 109.47027 * 300.00242 * 11 10 9 36 36 H 0.96994 * 119.99870 * 244.99802 * 15 12 11 37 37 H 1.09005 * 110.90346 * 215.99223 * 18 16 15 38 38 H 1.09000 * 110.90998 * 339.58958 * 18 16 15 39 39 H 1.08998 * 110.61564 * 278.52047 * 19 18 16 40 40 H 1.08997 * 110.62119 * 155.52521 * 19 18 16 41 41 H 1.08001 * 120.78908 * 0.02957 * 24 23 21 42 42 H 1.07995 * 120.42196 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.61649 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.61742 * 180.31416 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 16 6.1562 -4.3467 0.0010 13 8 5.8601 -4.9810 -1.2357 14 8 5.8601 -4.9797 1.2383 15 7 7.8059 -4.2017 0.0003 16 6 8.4890 -3.6028 1.1496 17 1 7.8049 -2.9683 1.7130 18 6 9.0821 -4.7041 2.0617 19 6 10.5601 -4.7494 1.5972 20 8 10.8703 -3.3657 1.3255 21 6 9.7165 -2.7945 0.6862 22 1 9.8197 -2.8653 -0.3966 23 6 9.5649 -1.3523 1.0961 24 6 9.0412 -0.4222 0.2110 25 6 8.9206 0.8934 0.6311 26 6 9.3240 1.2320 1.9091 27 7 9.8187 0.3208 2.7237 28 6 9.9430 -0.9407 2.3598 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6796 0.8894 31 1 3.8746 -0.6807 -0.8905 32 1 3.6579 -3.1505 -0.8896 33 1 3.6585 -3.1502 0.8903 34 1 5.9148 -2.1226 0.8901 35 1 5.9149 -2.1227 -0.8899 36 1 8.3198 -4.5135 -0.7610 37 1 9.0128 -4.4187 3.1114 38 1 8.5898 -5.6608 1.8869 39 1 10.6599 -5.3498 0.6929 40 1 11.1998 -5.1378 2.3896 41 1 8.7344 -0.7158 -0.7821 42 1 8.5165 1.6442 -0.0317 43 1 9.2330 2.2546 2.2442 44 1 10.3480 -1.6597 3.0565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343213795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -87.449338 kcal Electronic energy + Delta-G solvation = -27947.314833 eV Core-core repulsion = 23991.647169 eV Total energy + Delta-G solvation = -3955.667665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96778 -39.52417 -37.08422 -35.95801 -35.23392 -34.90167 -33.30128 -32.27379 -31.98761 -30.74127 -28.46863 -28.03730 -24.23306 -23.73639 -23.70717 -22.39061 -21.53412 -20.61567 -19.44645 -17.93128 -17.53321 -17.35517 -16.95626 -16.79301 -16.46974 -16.00379 -15.74455 -15.00220 -14.93600 -14.88901 -14.34272 -14.24497 -14.12950 -13.75712 -13.35126 -13.25755 -13.01682 -12.82023 -12.43097 -12.26260 -12.19892 -12.05795 -11.99246 -11.87544 -11.67415 -11.59315 -11.51673 -11.07988 -11.00512 -10.40612 -10.30235 -10.15642 -9.99145 -9.90749 -9.66004 -9.56050 -9.31854 -9.19625 -8.63302 -6.12723 -4.12358 0.22469 0.76725 0.99356 2.55332 3.22135 3.27952 3.30050 3.31611 3.59893 3.71125 3.93286 4.10633 4.18089 4.27071 4.35864 4.41198 4.54909 4.59073 4.68756 4.71156 4.73042 4.80912 4.91549 4.96146 5.08134 5.20853 5.21694 5.31833 5.36984 5.52693 5.60788 5.64143 5.69768 5.81653 5.91321 6.05114 6.17269 6.32268 6.41627 6.58624 6.62801 7.05654 7.19965 7.65976 7.71159 8.42781 8.91487 9.48174 11.00551 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.004081 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.353715 B = 6860.156242 C = 9111.559782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.097 4.097 11 C -0.615 4.615 12 S 2.599 3.401 13 O -0.957 6.957 14 O -0.954 6.954 15 N -1.116 6.116 16 C 0.127 3.873 17 H 0.105 0.895 18 C -0.169 4.169 19 C 0.045 3.955 20 O -0.363 6.363 21 C 0.121 3.879 22 H 0.091 0.909 23 C -0.149 4.149 24 C -0.064 4.064 25 C -0.169 4.169 26 C 0.102 3.898 27 N -0.485 5.485 28 C 0.123 3.877 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.416 0.584 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.157 0.843 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.945 -4.552 1.387 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.136 4.136 11 C -0.747 4.747 12 S 2.694 3.306 13 O -0.947 6.947 14 O -0.944 6.944 15 N -0.873 5.873 16 C 0.018 3.982 17 H 0.123 0.877 18 C -0.208 4.208 19 C -0.032 4.032 20 O -0.282 6.282 21 C 0.060 3.940 22 H 0.109 0.891 23 C -0.151 4.151 24 C -0.090 4.090 25 C -0.189 4.189 26 C -0.055 4.055 27 N -0.193 5.193 28 C -0.034 4.034 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.251 0.749 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.174 0.826 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 24.679 -4.851 2.442 25.270 hybrid contribution 0.212 1.232 -1.338 1.831 sum 24.891 -3.619 1.104 25.177 Atomic orbital electron populations 1.69907 1.06288 1.27020 1.50546 1.25019 0.94746 0.99142 0.94415 0.86789 0.80365 0.83697 0.78514 1.20203 1.21204 1.19067 1.21119 0.89196 0.94790 1.51510 0.90719 1.19516 0.97386 0.90581 0.96676 1.21319 0.86339 1.03090 1.02881 1.30614 1.09800 1.23182 1.11106 1.05433 0.72548 0.78115 0.74474 1.93603 1.82451 1.73570 1.45083 1.93596 1.82713 1.72645 1.45409 1.55925 1.26799 1.77519 1.27034 1.22109 0.95258 0.94104 0.86713 0.87734 1.23645 0.96069 1.00514 1.00599 1.23648 0.95582 0.83208 1.00717 1.88946 1.35370 1.23840 1.80010 1.21762 0.85352 0.89168 0.97694 0.89139 1.20686 1.02735 0.95241 0.96445 1.21445 0.95321 0.92701 0.99549 1.22185 1.01441 0.97088 0.98165 1.22889 0.93196 0.99254 0.90146 1.67780 1.13415 1.02010 1.36104 1.22648 0.94227 0.92603 0.93891 0.92577 0.96232 0.96640 0.90898 0.90914 0.85694 0.85181 0.74926 0.88973 0.88394 0.91679 0.88250 0.84494 0.84286 0.82550 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.53 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 9 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 10 C -0.10 -1.81 5.16 -26.73 -0.14 -1.95 16 11 C -0.62 -8.23 5.98 37.16 0.22 -8.01 16 12 S 2.60 33.50 5.38 -107.50 -0.58 32.92 16 13 O -0.96 -15.19 18.08 -57.54 -1.04 -16.23 16 14 O -0.95 -15.09 17.82 -57.54 -1.03 -16.12 16 15 N -1.12 -9.64 5.34 -3.59 -0.02 -9.66 16 16 C 0.13 1.06 3.10 -66.40 -0.21 0.86 16 17 H 0.10 0.91 6.84 -51.93 -0.36 0.55 16 18 C -0.17 -1.28 6.88 -24.73 -0.17 -1.45 16 19 C 0.04 0.29 7.72 38.21 0.29 0.58 16 20 O -0.36 -3.08 10.32 -35.23 -0.36 -3.45 16 21 C 0.12 0.96 3.44 -27.31 -0.09 0.86 16 22 H 0.09 0.60 7.71 -51.93 -0.40 0.20 16 23 C -0.15 -1.37 4.81 -104.48 -0.50 -1.88 16 24 C -0.06 -0.56 9.85 -39.28 -0.39 -0.95 16 25 C -0.17 -1.52 10.11 -39.44 -0.40 -1.92 16 26 C 0.10 1.01 11.18 -17.54 -0.20 0.81 16 27 N -0.48 -5.61 10.36 -13.25 -0.14 -5.75 16 28 C 0.12 1.28 10.52 -17.55 -0.18 1.09 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 31 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.12 1.47 7.52 -51.92 -0.39 1.08 16 35 H 0.13 1.44 8.14 -51.92 -0.42 1.02 16 36 H 0.42 2.69 8.65 -34.47 -0.30 2.39 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -36.63 377.89 -10.09 -46.72 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.42 Total: 1.47 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -2.30 Total: -25.35 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.62 Total: -42.00 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -2.43 Total: -35.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 33.50 SS G_CDS: -0.58 Total: 32.92 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.63 -10.09 -46.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343213795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.733 kcal (2) G-P(sol) polarization free energy of solvation -36.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds