Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46726 * 239.99819 * 3 2 1 5 5 H 1.48500 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46980 * 120.00190 * 3 2 1 7 7 C 1.37884 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47223 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47148 * 179.97438 * 11 10 9 13 13 O 1.42107 * 110.54058 * 68.38051 * 12 11 10 14 14 O 1.42095 * 110.54600 * 291.63152 * 12 11 10 15 15 N 1.65602 * 104.45404 * 180.02562 * 12 11 10 16 16 C 1.46504 * 119.99454 * 65.00231 * 15 12 11 17 17 H 1.08998 * 110.56591 * 22.32140 * 16 15 12 18 18 C 1.54506 * 110.51060 * 259.64173 * 16 15 12 19 19 C 1.54469 * 104.06481 * 241.35650 * 18 16 15 20 20 O 1.44423 * 104.80317 * 23.97964 * 19 18 16 21 21 C 1.44425 * 105.27664 * 319.48694 * 20 19 18 22 22 H 1.08997 * 110.46719 * 281.63401 * 21 20 19 23 23 C 1.50699 * 110.37303 * 159.33930 * 21 20 19 24 24 C 1.38676 * 120.41624 * 149.62213 * 23 21 20 25 25 C 1.38620 * 118.42038 * 180.02562 * 24 23 21 26 26 C 1.38235 * 119.16331 * 359.97438 * 25 24 23 27 27 N 1.31850 * 120.75840 * 0.02562 * 26 25 24 28 28 C 1.31892 * 121.73050 * 359.97438 * 27 26 25 29 29 H 0.96998 * 119.99756 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47295 * 59.99495 * 9 7 2 31 31 H 1.09002 * 109.47128 * 299.99774 * 9 7 2 32 32 H 1.09000 * 109.46587 * 59.99902 * 10 9 7 33 33 H 1.09002 * 109.47081 * 300.00164 * 10 9 7 34 34 H 1.09000 * 109.47100 * 60.00606 * 11 10 9 35 35 H 1.09002 * 109.47543 * 300.00270 * 11 10 9 36 36 H 0.96992 * 120.00227 * 245.00777 * 15 12 11 37 37 H 1.09003 * 110.51170 * 0.02562 * 18 16 15 38 38 H 1.09006 * 110.51309 * 122.71084 * 18 16 15 39 39 H 1.08997 * 110.37555 * 142.81166 * 19 18 16 40 40 H 1.09003 * 110.37718 * 265.15049 * 19 18 16 41 41 H 1.07997 * 120.78632 * 0.04303 * 24 23 21 42 42 H 1.07998 * 120.42207 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.61916 * 179.72746 * 26 25 24 44 44 H 1.08001 * 119.61772 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 16 2.6587 -6.3660 0.0004 13 8 3.3563 -6.4263 1.2370 14 8 3.3547 -6.4264 -1.2369 15 7 1.7084 -7.7222 0.0005 16 6 0.8485 -8.0140 -1.1492 17 1 1.2171 -7.5077 -2.0413 18 6 -0.6098 -7.5977 -0.8541 19 6 -1.4041 -8.9191 -0.9495 20 8 -0.4309 -9.9541 -0.6899 21 6 0.7628 -9.5378 -1.3881 22 1 0.6750 -9.7505 -2.4534 23 6 1.9736 -10.2276 -0.8144 24 6 3.0676 -10.5099 -1.6185 25 6 4.1591 -11.1461 -1.0480 26 6 4.1213 -11.4752 0.2941 27 7 3.0638 -11.1911 1.0285 28 6 2.0078 -10.5867 0.5195 29 1 -0.4850 0.8401 0.0004 30 1 0.6245 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8717 -3.6044 0.8905 33 1 2.8718 -3.6045 -0.8895 34 1 0.8532 -5.0451 -0.8886 35 1 0.8536 -5.0446 0.8914 36 1 1.7209 -8.3232 0.7616 37 1 -0.6910 -7.1743 0.1471 38 1 -0.9623 -6.8855 -1.6003 39 1 -2.1930 -8.9428 -0.1977 40 1 -1.8263 -9.0369 -1.9475 41 1 3.0692 -10.2403 -2.6642 42 1 5.0281 -11.3817 -1.6444 43 1 4.9658 -11.9749 0.7451 44 1 1.1600 -10.3700 1.1525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343213796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = -89.726866 kcal Electronic energy + Delta-G solvation = -27848.581924 eV Core-core repulsion = 23892.815499 eV Total energy + Delta-G solvation = -3955.766426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97141 -39.43409 -36.95515 -35.82513 -35.09944 -34.73156 -33.18465 -32.24696 -32.01630 -30.59053 -28.09453 -27.85393 -24.15650 -23.89139 -23.74691 -22.22008 -21.29627 -20.69863 -19.42039 -17.89107 -17.58569 -17.07643 -16.69739 -16.61546 -16.17959 -15.90382 -15.77259 -15.31501 -14.84896 -14.66158 -14.51567 -14.30957 -13.97498 -13.47149 -13.31428 -13.26452 -12.73269 -12.59330 -12.33846 -12.13886 -12.03404 -11.95078 -11.84985 -11.83316 -11.49535 -11.41519 -11.26537 -10.92616 -10.90869 -10.51138 -10.43109 -10.06035 -9.99741 -9.77209 -9.65170 -9.37988 -9.22592 -9.14019 -8.43825 -6.09145 -4.12315 0.37587 0.81615 1.03208 2.72700 3.29845 3.33504 3.33813 3.37020 3.61070 3.86663 4.02471 4.13561 4.28773 4.33640 4.39606 4.57080 4.60917 4.69502 4.70583 4.74735 4.80886 4.91261 4.98523 5.09751 5.15290 5.23150 5.27436 5.35228 5.39379 5.52765 5.60898 5.75537 5.83330 5.84006 5.93702 6.20776 6.34844 6.38648 6.45273 6.76275 6.82158 7.52103 7.62054 7.74154 7.88577 8.29029 8.93591 9.52568 11.02032 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002772 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.857495 B =10100.162130 C =11038.199015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.607 4.607 12 S 2.594 3.406 13 O -0.959 6.959 14 O -0.961 6.961 15 N -1.113 6.113 16 C 0.124 3.876 17 H 0.115 0.885 18 C -0.182 4.182 19 C 0.047 3.953 20 O -0.363 6.363 21 C 0.119 3.881 22 H 0.094 0.906 23 C -0.127 4.127 24 C -0.062 4.062 25 C -0.170 4.170 26 C 0.097 3.903 27 N -0.482 5.482 28 C 0.114 3.886 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.415 0.585 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.157 0.843 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -23.825 -4.598 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.690 3.310 13 O -0.949 6.949 14 O -0.951 6.951 15 N -0.871 5.871 16 C 0.015 3.985 17 H 0.133 0.867 18 C -0.222 4.222 19 C -0.030 4.030 20 O -0.282 6.282 21 C 0.059 3.941 22 H 0.112 0.888 23 C -0.129 4.129 24 C -0.088 4.088 25 C -0.190 4.190 26 C -0.060 4.060 27 N -0.190 5.190 28 C -0.043 4.043 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.251 0.749 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.174 0.826 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.066 -24.044 -3.729 24.332 hybrid contribution -0.310 1.393 -0.729 1.602 sum -0.376 -22.652 -4.458 23.089 Atomic orbital electron populations 1.69941 1.06091 1.26931 1.50472 1.25013 0.94891 0.99363 0.95033 0.86614 0.79589 0.82791 0.78798 1.20106 1.21218 1.20086 1.21217 0.93235 0.90905 1.51275 0.92424 1.19046 0.93468 0.90384 0.97700 1.21511 0.99421 0.91640 1.01986 1.30580 1.16278 1.15817 1.11244 1.05525 0.75786 0.75295 0.74409 1.93595 1.70545 1.85776 1.45033 1.93563 1.70189 1.85736 1.45563 1.55908 1.61522 1.42521 1.27172 1.22151 0.90619 0.96068 0.89665 0.86743 1.23677 0.94336 0.99141 1.05020 1.23429 0.92092 0.85568 1.01899 1.89180 1.21732 1.44565 1.72720 1.21942 0.84080 0.91580 0.96544 0.88800 1.20426 0.95762 1.00848 0.95871 1.21401 0.92309 0.94733 1.00389 1.22138 0.99471 1.00441 0.96941 1.22854 0.96102 0.96081 0.90945 1.67762 1.00531 1.11622 1.39088 1.22641 0.95908 0.93229 0.92559 0.92815 0.96144 0.96109 0.91579 0.91581 0.85503 0.85177 0.74906 0.88852 0.88751 0.88357 0.91596 0.84471 0.84442 0.82620 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 10 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 11 C -0.61 -8.94 6.07 37.15 0.23 -8.72 16 12 S 2.59 37.98 5.44 -107.50 -0.58 37.39 16 13 O -0.96 -17.38 18.08 -57.54 -1.04 -18.42 16 14 O -0.96 -16.27 17.44 -57.54 -1.00 -17.27 16 15 N -1.11 -12.21 4.52 -3.56 -0.02 -12.23 16 16 C 0.12 1.08 3.53 -66.36 -0.23 0.85 16 17 H 0.11 0.93 7.56 -51.93 -0.39 0.54 16 18 C -0.18 -1.29 6.88 -25.17 -0.17 -1.46 16 19 C 0.05 0.30 7.63 37.93 0.29 0.59 16 20 O -0.36 -3.19 10.42 -35.23 -0.37 -3.56 16 21 C 0.12 0.99 3.48 -27.11 -0.09 0.89 16 22 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 23 C -0.13 -1.26 4.30 -104.48 -0.45 -1.71 16 24 C -0.06 -0.57 9.86 -39.28 -0.39 -0.96 16 25 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 26 C 0.10 0.97 11.18 -17.54 -0.20 0.77 16 27 N -0.48 -5.79 10.36 -13.25 -0.14 -5.92 16 28 C 0.11 1.26 8.61 -17.55 -0.15 1.10 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.13 1.58 8.14 -51.92 -0.42 1.16 16 35 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.41 4.43 6.33 -34.47 -0.22 4.22 16 37 H 0.09 0.68 7.97 -51.93 -0.41 0.26 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.16 1.60 7.37 -52.49 -0.39 1.21 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -36.40 377.59 -10.45 -46.85 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.45 Total: 2.19 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -2.26 Total: -25.59 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.58 Total: -43.64 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.41 Total: -39.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.58 Total: 37.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.40 -10.45 -46.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343213796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.880 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds