Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46726 * 239.99819 * 3 2 1 5 5 H 1.48500 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46980 * 120.00190 * 3 2 1 7 7 C 1.37884 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47223 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47148 * 179.97438 * 11 10 9 13 13 O 1.42107 * 110.54058 * 68.38051 * 12 11 10 14 14 O 1.42095 * 110.54600 * 291.63152 * 12 11 10 15 15 N 1.65602 * 104.45404 * 180.02562 * 12 11 10 16 16 C 1.46504 * 119.99454 * 65.00231 * 15 12 11 17 17 H 1.08998 * 110.56591 * 22.32140 * 16 15 12 18 18 C 1.54506 * 110.51060 * 259.64173 * 16 15 12 19 19 C 1.54469 * 104.06481 * 241.35650 * 18 16 15 20 20 O 1.44423 * 104.80317 * 23.97964 * 19 18 16 21 21 C 1.44425 * 105.27664 * 319.48694 * 20 19 18 22 22 H 1.08997 * 110.46719 * 281.63401 * 21 20 19 23 23 C 1.50699 * 110.37303 * 159.33930 * 21 20 19 24 24 C 1.38676 * 120.41624 * 149.62213 * 23 21 20 25 25 C 1.38620 * 118.42038 * 180.02562 * 24 23 21 26 26 C 1.38235 * 119.16331 * 359.97438 * 25 24 23 27 27 N 1.31850 * 120.75840 * 0.02562 * 26 25 24 28 28 C 1.31892 * 121.73050 * 359.97438 * 27 26 25 29 29 H 0.96998 * 119.99756 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47295 * 59.99495 * 9 7 2 31 31 H 1.09002 * 109.47128 * 299.99774 * 9 7 2 32 32 H 1.09000 * 109.46587 * 59.99902 * 10 9 7 33 33 H 1.09002 * 109.47081 * 300.00164 * 10 9 7 34 34 H 1.09000 * 109.47100 * 60.00606 * 11 10 9 35 35 H 1.09002 * 109.47543 * 300.00270 * 11 10 9 36 36 H 0.96992 * 120.00227 * 245.00777 * 15 12 11 37 37 H 1.09003 * 110.51170 * 0.02562 * 18 16 15 38 38 H 1.09006 * 110.51309 * 122.71084 * 18 16 15 39 39 H 1.08997 * 110.37555 * 142.81166 * 19 18 16 40 40 H 1.09003 * 110.37718 * 265.15049 * 19 18 16 41 41 H 1.07997 * 120.78632 * 0.04303 * 24 23 21 42 42 H 1.07998 * 120.42207 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.61916 * 179.72746 * 26 25 24 44 44 H 1.08001 * 119.61772 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 16 2.6587 -6.3660 0.0004 13 8 3.3563 -6.4263 1.2370 14 8 3.3547 -6.4264 -1.2369 15 7 1.7084 -7.7222 0.0005 16 6 0.8485 -8.0140 -1.1492 17 1 1.2171 -7.5077 -2.0413 18 6 -0.6098 -7.5977 -0.8541 19 6 -1.4041 -8.9191 -0.9495 20 8 -0.4309 -9.9541 -0.6899 21 6 0.7628 -9.5378 -1.3881 22 1 0.6750 -9.7505 -2.4534 23 6 1.9736 -10.2276 -0.8144 24 6 3.0676 -10.5099 -1.6185 25 6 4.1591 -11.1461 -1.0480 26 6 4.1213 -11.4752 0.2941 27 7 3.0638 -11.1911 1.0285 28 6 2.0078 -10.5867 0.5195 29 1 -0.4850 0.8401 0.0004 30 1 0.6245 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 2.8717 -3.6044 0.8905 33 1 2.8718 -3.6045 -0.8895 34 1 0.8532 -5.0451 -0.8886 35 1 0.8536 -5.0446 0.8914 36 1 1.7209 -8.3232 0.7616 37 1 -0.6910 -7.1743 0.1471 38 1 -0.9623 -6.8855 -1.6003 39 1 -2.1930 -8.9428 -0.1977 40 1 -1.8263 -9.0369 -1.9475 41 1 3.0692 -10.2403 -2.6642 42 1 5.0281 -11.3817 -1.6444 43 1 4.9658 -11.9749 0.7451 44 1 1.1600 -10.3700 1.1525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343213796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -116.565917 kcal Electronic energy + Delta-G solvation = -27849.745753 eV Core-core repulsion = 23892.815499 eV Total energy + Delta-G solvation = -3956.930254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64490 -40.09099 -38.24779 -37.11810 -36.48659 -35.88549 -34.18988 -33.87648 -32.69880 -31.28580 -29.66665 -28.74022 -25.64814 -24.79901 -24.56931 -22.87586 -22.41129 -21.92717 -20.52205 -18.98057 -18.59906 -18.26979 -17.83300 -17.41649 -17.23403 -16.95454 -16.67603 -16.51424 -16.29670 -15.70956 -15.48619 -15.26971 -14.75183 -14.50246 -14.17960 -14.10155 -13.96373 -13.94600 -13.57398 -13.52943 -13.25962 -13.20470 -13.01365 -12.81319 -12.74651 -12.69020 -12.51355 -12.23806 -12.16010 -11.99657 -11.75839 -11.39699 -11.21452 -10.98867 -10.77910 -10.57044 -10.41216 -10.34775 -9.93473 -8.23030 -6.33687 -0.81767 0.10307 0.31833 1.40240 1.42237 1.50205 1.68263 2.39504 2.69214 2.70488 2.94362 3.10661 3.13610 3.40244 3.52235 3.61714 3.70811 3.88340 3.95901 3.98069 4.08220 4.13212 4.14423 4.19951 4.31812 4.37361 4.43415 4.59237 4.63040 4.77792 4.85890 4.92039 4.93300 5.02012 5.06061 5.16176 5.20595 5.25510 5.44954 5.63046 5.72227 5.79130 5.83670 5.89013 6.19717 6.81558 7.00513 7.35555 8.88088 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002772 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.857495 B =10100.162130 C =11038.199015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.107 4.107 11 C -0.604 4.604 12 S 2.619 3.381 13 O -0.997 6.997 14 O -0.982 6.982 15 N -1.102 6.102 16 C 0.113 3.887 17 H 0.125 0.875 18 C -0.183 4.183 19 C 0.045 3.955 20 O -0.380 6.380 21 C 0.122 3.878 22 H 0.119 0.881 23 C -0.134 4.134 24 C -0.074 4.074 25 C -0.171 4.171 26 C 0.079 3.921 27 N -0.513 5.513 28 C 0.095 3.905 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.002 0.998 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.418 0.582 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.176 0.824 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 -24.168 -5.945 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.146 4.146 11 C -0.735 4.735 12 S 2.715 3.285 13 O -0.987 6.987 14 O -0.972 6.972 15 N -0.862 5.862 16 C 0.005 3.995 17 H 0.143 0.857 18 C -0.222 4.222 19 C -0.031 4.031 20 O -0.299 6.299 21 C 0.062 3.938 22 H 0.136 0.864 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.190 4.190 26 C -0.078 4.078 27 N -0.222 5.222 28 C -0.062 4.062 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.255 0.745 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.193 0.807 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.058 -24.390 -5.077 24.912 hybrid contribution -0.348 1.422 -0.325 1.500 sum -0.406 -22.968 -5.401 23.598 Atomic orbital electron populations 1.70048 1.07531 1.27958 1.51243 1.25890 0.95799 1.03067 0.94563 0.85579 0.78425 0.78390 0.79174 1.19176 1.20584 1.19428 1.21720 0.93710 0.92635 1.51237 0.92328 1.18933 0.93903 0.91507 0.96088 1.21322 0.98752 0.92593 1.01948 1.30511 1.16384 1.13141 1.13510 1.04536 0.75449 0.75486 0.73022 1.93541 1.72031 1.86506 1.46659 1.93530 1.71119 1.86258 1.46283 1.55563 1.61558 1.40930 1.28179 1.22485 0.91152 0.96850 0.88965 0.85744 1.23716 0.93175 0.99892 1.05408 1.23582 0.91707 0.84561 1.03234 1.89175 1.22211 1.45371 1.73147 1.22030 0.83458 0.90735 0.97579 0.86392 1.20645 0.96720 1.00736 0.95521 1.21810 0.92114 0.94449 1.01570 1.22496 1.00309 0.99467 0.96729 1.23302 0.96261 0.96408 0.91779 1.67721 1.01465 1.12665 1.40322 1.22730 0.95960 0.94086 0.93409 0.92602 0.97387 0.97912 0.92066 0.91391 0.82888 0.83538 0.74517 0.89155 0.87133 0.87679 0.89784 0.82157 0.81725 0.80691 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.70 4.97 29.85 0.15 1.85 16 10 C -0.11 -4.22 5.16 30.59 0.16 -4.06 16 11 C -0.60 -17.05 6.07 71.98 0.44 -16.62 16 12 S 2.62 74.34 5.44 -56.49 -0.31 74.03 16 13 O -1.00 -36.08 18.08 -127.65 -2.31 -38.39 16 14 O -0.98 -32.08 17.44 -127.65 -2.23 -34.30 16 15 N -1.10 -22.81 4.52 -165.17 -0.75 -23.56 16 16 C 0.11 1.73 3.53 46.01 0.16 1.89 16 17 H 0.12 1.68 7.56 -2.39 -0.02 1.66 16 18 C -0.18 -2.14 6.88 31.61 0.22 -1.93 16 19 C 0.05 0.48 7.63 72.48 0.55 1.03 16 20 O -0.38 -6.02 10.42 -148.98 -1.55 -7.57 16 21 C 0.12 1.78 3.48 30.35 0.11 1.88 16 22 H 0.12 1.15 8.10 -2.39 -0.02 1.13 16 23 C -0.13 -2.49 4.30 -19.78 -0.09 -2.58 16 24 C -0.07 -1.22 9.86 22.47 0.22 -1.00 16 25 C -0.17 -2.74 10.11 22.36 0.23 -2.51 16 26 C 0.08 1.53 11.18 84.69 0.95 2.47 16 27 N -0.51 -12.40 10.36 -195.84 -2.03 -14.43 16 28 C 0.09 2.08 8.61 84.67 0.73 2.81 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.42 8.71 6.33 -96.75 -0.61 8.09 16 37 H 0.09 1.13 7.97 -2.39 -0.02 1.11 16 38 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 44 H 0.16 3.26 7.37 -2.91 -0.02 3.24 16 Total: -1.00 -78.57 377.59 -1.95 -80.52 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.39 Total: 19.29 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 4.52 Total: -46.86 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.49 Total: -92.34 kcal Atomic # 8 Polarization: -74.18 SS G_CDS: -6.09 Total: -80.27 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 74.34 SS G_CDS: -0.31 Total: 74.03 kcal Total: -78.57 -1.95 -80.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343213796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.048 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds