Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38019 * 119.89291 * 2 1 4 4 C 1.38238 * 119.95881 * 180.02562 * 3 2 1 5 5 C 1.38151 * 119.98575 * 0.06033 * 4 3 2 6 6 C 1.38461 * 120.31327 * 359.97438 * 5 4 3 7 7 C 1.38410 * 119.83318 * 359.89787 * 6 5 4 8 8 O 1.35847 * 121.80316 * 180.47214 * 7 6 5 9 9 C 1.42817 * 117.88644 * 342.77095 * 8 7 6 10 10 C 1.53404 * 108.37894 * 49.14049 * 9 8 7 11 11 H 1.09004 * 109.69921 * 55.06396 * 10 9 8 12 12 N 1.46505 * 109.69915 * 175.61854 * 10 9 8 13 13 S 1.65598 * 119.99839 * 264.44861 * 12 10 9 14 14 O 1.42099 * 106.40051 * 311.45557 * 13 12 10 15 15 O 1.42105 * 106.40206 * 178.53858 * 13 12 10 16 16 N 1.65596 * 107.21978 * 64.99690 * 13 12 10 17 17 C 1.46507 * 119.99652 * 269.99930 * 16 13 12 18 18 C 1.46493 * 120.00283 * 90.00301 * 16 13 12 19 19 C 1.50706 * 109.47128 * 264.99750 * 18 16 13 20 20 H 1.08000 * 119.99302 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00436 * 179.72498 * 19 18 16 22 22 N 1.31515 * 119.99684 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46683 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47426 * 119.99743 * 23 21 19 26 26 H 1.48501 * 109.46833 * 239.99986 * 23 21 19 27 27 C 1.50774 * 118.77152 * 179.85225 * 6 5 4 28 28 H 1.09002 * 109.46845 * 90.00503 * 1 2 3 29 29 H 1.09000 * 109.46978 * 210.00346 * 1 2 3 30 30 H 1.09000 * 109.47522 * 330.00661 * 1 2 3 31 31 H 1.08003 * 120.01761 * 0.05238 * 3 2 1 32 32 H 1.07997 * 120.00773 * 180.08787 * 4 3 2 33 33 H 1.07998 * 119.84012 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.64595 * 289.44314 * 9 8 7 35 35 H 1.08997 * 109.71721 * 168.88329 * 9 8 7 36 36 H 0.97001 * 119.99931 * 84.43841 * 12 10 9 37 37 H 1.09004 * 109.46950 * 270.00216 * 17 16 13 38 38 H 1.08991 * 109.47476 * 30.00030 * 17 16 13 39 39 H 1.09001 * 109.47270 * 150.00383 * 17 16 13 40 40 H 1.09001 * 109.47786 * 145.00023 * 18 16 13 41 41 H 1.08998 * 109.47558 * 24.99885 * 18 16 13 42 42 H 0.97004 * 120.00247 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.43479 * 42.15592 * 27 6 5 44 44 H 1.08997 * 109.43367 * 282.28766 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1966 0.0000 4 6 3.5773 1.1982 -0.0005 5 6 4.2691 0.0024 -0.0023 6 6 3.5844 -1.2011 -0.0031 7 6 2.2003 -1.2059 0.0001 8 8 1.4884 -2.3629 0.0091 9 6 2.1644 -3.5660 -0.3588 10 6 3.4767 -3.6446 0.4318 11 1 3.2684 -3.5633 1.4986 12 7 4.1445 -4.9188 0.1548 13 16 3.9310 -6.2046 1.1763 14 8 4.1432 -5.7114 2.4920 15 8 4.6706 -7.2843 0.6224 16 7 2.3352 -6.6386 1.0913 17 6 1.3617 -6.0321 2.0028 18 6 1.8970 -7.6289 0.1048 19 6 1.3985 -6.9221 -1.1293 20 1 1.4069 -5.8430 -1.1740 21 6 0.9365 -7.6529 -2.2032 22 7 0.9313 -8.9670 -2.1508 23 14 0.3192 -6.7768 -3.7332 24 1 0.4298 -5.3084 -3.5411 25 1 1.1377 -7.1865 -4.9024 26 1 -1.1010 -7.1388 -3.9718 27 6 4.3743 -2.4854 -0.0084 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6534 2.1311 0.0009 32 1 4.1163 2.1340 0.0009 33 1 5.3491 0.0063 -0.0023 34 1 2.3797 -3.5533 -1.4272 35 1 1.5397 -4.4266 -0.1198 36 1 4.7115 -5.0094 -0.6269 37 1 1.2885 -6.6337 2.9089 38 1 1.6849 -5.0238 2.2613 39 1 0.3872 -5.9878 1.5165 40 1 1.0934 -8.2320 0.5275 41 1 2.7348 -8.2740 -0.1595 42 1 0.6066 -9.4813 -2.9065 43 1 5.2155 -2.3967 0.6791 44 1 4.7476 -2.6774 -1.0143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352579169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -94.378308 kcal Electronic energy + Delta-G solvation = -28955.574316 eV Core-core repulsion = 24999.606189 eV Total energy + Delta-G solvation = -3955.968127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82010 -37.78145 -36.74762 -35.95260 -35.55644 -35.31694 -33.21513 -32.55714 -31.17240 -29.21725 -27.86602 -26.87643 -25.85281 -25.11726 -23.37125 -22.36083 -21.34282 -20.28807 -19.02727 -17.77215 -17.45143 -17.07751 -16.55175 -16.38626 -16.00728 -15.44645 -15.08683 -14.75718 -14.51428 -14.32965 -13.91334 -13.61570 -13.57887 -13.46167 -13.23903 -13.04510 -12.69391 -12.47830 -12.41127 -12.22784 -11.80107 -11.77339 -11.66170 -11.60271 -11.41689 -11.32768 -11.21858 -11.19425 -10.86001 -10.77689 -10.66249 -10.56365 -10.16108 -9.79837 -9.31492 -8.70400 -8.56424 -8.13707 -8.10292 -6.17933 -4.25548 1.16390 1.20826 1.35532 3.18378 3.19658 3.28853 3.29901 3.46991 3.67246 4.05330 4.30117 4.48873 4.55633 4.69185 4.75351 4.88003 4.94852 5.03575 5.17031 5.19433 5.28328 5.38880 5.48329 5.53275 5.55690 5.65581 5.66715 5.72575 5.81036 5.95291 6.01560 6.05670 6.16684 6.27417 6.31905 6.36854 6.45403 6.47943 6.74277 7.08717 7.30991 7.37182 7.47864 7.56425 7.78747 8.06288 8.78417 9.41337 10.90003 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.004672 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.257882 B = 5992.192487 C = 7467.624067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.115 4.115 3 C -0.093 4.093 4 C -0.152 4.152 5 C -0.089 4.089 6 C -0.153 4.153 7 C 0.133 3.867 8 O -0.306 6.306 9 C 0.035 3.965 10 C 0.122 3.878 11 H 0.101 0.899 12 N -1.116 6.116 13 S 2.786 3.214 14 O -0.997 6.997 15 O -0.974 6.974 16 N -0.997 5.997 17 C 0.100 3.900 18 C 0.244 3.756 19 C -0.546 4.546 20 H 0.067 0.933 21 C 0.067 3.933 22 N -0.886 5.886 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.081 4.081 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.416 0.584 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.265 0.735 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 17.657 4.016 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C -0.111 4.111 4 C -0.171 4.171 5 C -0.107 4.107 6 C -0.155 4.155 7 C 0.087 3.913 8 O -0.219 6.219 9 C -0.042 4.042 10 C 0.014 3.986 11 H 0.119 0.881 12 N -0.874 5.874 13 S 2.794 3.206 14 O -0.981 6.981 15 O -0.958 6.958 16 N -0.840 5.840 17 C -0.046 4.046 18 C 0.122 3.878 19 C -0.585 4.585 20 H 0.085 0.915 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.718 3.282 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.120 4.120 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.250 0.750 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.183 17.030 4.680 17.946 hybrid contribution -0.200 0.453 -1.722 1.792 sum 2.984 17.483 2.958 17.981 Atomic orbital electron populations 1.20621 0.90505 1.02802 1.02337 1.19443 0.96618 0.90457 1.05017 1.20824 0.94155 0.96693 0.99433 1.20940 0.94222 0.97794 1.04111 1.20843 0.99647 0.91254 0.98976 1.19767 0.92421 0.95857 1.07466 1.18631 0.89520 0.86348 0.96776 1.86054 1.38604 1.13781 1.83426 1.24025 0.94745 0.85593 0.99811 1.21276 0.92542 0.84098 1.00712 0.88113 1.56048 1.62034 1.25135 1.44168 1.01762 0.73389 0.72501 0.72966 1.93554 1.85443 1.81579 1.37490 1.93604 1.70751 1.51918 1.79569 1.57632 1.25228 1.54549 1.46575 1.21325 0.94411 0.96206 0.92691 1.19253 0.97197 0.86354 0.85014 1.21658 1.43499 0.93606 0.99728 0.91539 1.24939 0.95467 0.94761 0.98542 1.69939 1.45986 1.04942 1.31569 0.86565 0.78679 0.79858 0.83079 1.19620 1.20878 1.20835 1.20769 0.97827 0.90202 1.03169 0.91439 0.90769 0.91898 0.85686 0.86065 0.85918 0.90909 0.84665 0.75012 0.93380 0.92889 0.90482 0.94214 0.93000 0.92560 0.89269 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.76 36.01 0.35 -0.78 16 2 C -0.11 -1.40 5.90 -104.38 -0.62 -2.02 16 3 C -0.09 -0.96 9.69 -39.66 -0.38 -1.35 16 4 C -0.15 -1.51 10.04 -39.61 -0.40 -1.91 16 5 C -0.09 -0.95 9.67 -39.53 -0.38 -1.34 16 6 C -0.15 -1.93 5.75 -104.44 -0.60 -2.53 16 7 C 0.13 1.85 6.46 -39.20 -0.25 1.59 16 8 O -0.31 -4.64 9.19 -19.26 -0.18 -4.82 16 9 C 0.03 0.53 6.15 37.37 0.23 0.76 16 10 C 0.12 1.73 3.04 -67.68 -0.21 1.53 16 11 H 0.10 1.47 7.09 -51.93 -0.37 1.10 16 12 N -1.12 -17.06 5.55 -4.68 -0.03 -17.08 16 13 S 2.79 52.76 6.09 -107.50 -0.65 52.11 16 14 O -1.00 -19.78 16.56 -57.17 -0.95 -20.73 16 15 O -0.97 -21.76 16.69 -57.17 -0.95 -22.71 16 16 N -1.00 -19.51 2.88 -123.05 -0.35 -19.86 16 17 C 0.10 1.65 9.35 59.85 0.56 2.21 16 18 C 0.24 5.77 5.41 -5.19 -0.03 5.74 16 19 C -0.55 -13.47 9.38 -34.44 -0.32 -13.79 16 20 H 0.07 1.52 5.10 -52.49 -0.27 1.25 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 23 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.08 -0.97 5.41 -27.81 -0.15 -1.12 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.14 2.28 4.73 -51.93 -0.25 2.03 16 36 H 0.42 5.61 8.82 -34.47 -0.30 5.31 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.78 7.36 -51.93 -0.38 0.39 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -31.39 367.45 -10.25 -41.64 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.09 Total: 6.10 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.30 Total: -11.35 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.36 Total: -60.86 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -2.08 Total: -48.27 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.65 Total: 52.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.39 -10.25 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352579169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.742 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds