Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48493 * 109.47051 * 269.99609 * 3 2 1 5 5 H 1.48503 * 109.46915 * 29.99709 * 3 2 1 6 6 H 1.48500 * 109.47042 * 149.99276 * 3 2 1 7 7 C 1.37874 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00105 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99954 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00315 * 277.85941 * 10 9 7 12 12 C 1.50705 * 109.46968 * 270.00077 * 11 10 9 13 13 C 1.38681 * 120.41474 * 269.71747 * 12 11 10 14 14 C 1.38629 * 118.41569 * 179.78237 * 13 12 11 15 15 C 1.38220 * 119.16081 * 0.51783 * 14 13 12 16 16 N 1.31858 * 120.76647 * 359.72188 * 15 14 13 17 17 C 1.31882 * 121.72325 * 0.02562 * 16 15 14 18 18 C 1.34785 * 119.99704 * 97.85731 * 10 9 7 19 19 O 1.21527 * 119.99696 * 185.94280 * 18 10 9 20 20 C 1.48002 * 119.99739 * 5.94467 * 18 10 9 21 21 C 1.39874 * 120.45819 * 150.55834 * 20 18 10 22 22 C 1.38450 * 118.35461 * 180.02562 * 21 20 18 23 23 C 1.39302 * 119.19342 * 0.02562 * 22 21 20 24 24 C 1.48329 * 119.57696 * 179.97438 * 23 22 21 25 25 N 1.34779 * 120.00701 * 179.97438 * 24 23 22 26 26 O 1.21494 * 119.99906 * 0.02562 * 24 23 22 27 27 N 1.32717 * 120.85479 * 0.24940 * 23 22 21 28 28 C 1.31415 * 121.80140 * 359.48187 * 27 23 22 29 29 H 0.96999 * 119.99781 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46628 * 60.00357 * 9 7 2 31 31 H 1.08995 * 109.47184 * 300.00278 * 9 7 2 32 32 H 1.08996 * 109.46944 * 29.99645 * 11 10 9 33 33 H 1.08997 * 109.47055 * 149.99694 * 11 10 9 34 34 H 1.07997 * 120.78632 * 0.02907 * 13 12 11 35 35 H 1.07998 * 120.41715 * 180.22384 * 14 13 12 36 36 H 1.08006 * 119.61828 * 179.74607 * 15 14 13 37 37 H 1.08004 * 119.61383 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.82145 * 359.97438 * 21 20 18 39 39 H 1.08003 * 120.40699 * 180.02562 * 22 21 20 40 40 H 0.96998 * 120.00160 * 180.02562 * 25 24 23 41 41 H 0.96999 * 119.99411 * 359.72002 * 25 24 23 42 42 H 1.08003 * 119.64027 * 180.26548 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.0800 -3.3240 1.2576 12 6 5.4344 -3.1116 1.8834 13 6 6.4864 -3.9652 1.5870 14 6 7.7158 -3.7287 2.1825 15 6 7.8482 -2.6641 3.0540 16 7 6.8244 -1.8758 3.3164 17 6 5.6421 -2.0677 2.7645 18 6 4.3754 -3.1571 -1.1553 19 8 4.6774 -4.3341 -1.1732 20 6 4.4199 -2.3626 -2.4032 21 6 5.3250 -2.6876 -3.4189 22 6 5.3297 -1.9148 -4.5676 23 6 4.4404 -0.8477 -4.6722 24 6 4.4386 -0.0138 -5.8989 25 7 3.5815 1.0205 -6.0095 26 8 5.2091 -0.2636 -6.8044 27 7 3.5984 -0.5642 -3.6863 28 6 3.5594 -1.2764 -2.5826 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6800 0.8912 31 1 3.8752 -0.6804 -0.8888 32 1 3.3056 -2.9731 1.9396 33 1 3.9344 -4.3856 1.0579 34 1 6.3522 -4.7920 0.9053 35 1 8.5580 -4.3710 1.9718 36 1 8.8016 -2.4755 3.5253 37 1 4.8267 -1.4012 3.0041 38 1 6.0040 -3.5204 -3.3093 39 1 6.0145 -2.1365 -5.3728 40 1 3.5801 1.5655 -6.8119 41 1 2.9630 1.2169 -5.2886 42 1 2.8571 -1.0171 -1.8041 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354507450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = 28.886667 kcal Electronic energy + Delta-G solvation = -29143.607122 eV Core-core repulsion = 25089.832965 eV Total energy + Delta-G solvation = -4053.774157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84329 -40.12945 -39.33295 -38.18151 -35.81203 -33.86195 -33.45680 -32.47574 -32.20134 -31.81964 -30.87682 -28.55699 -26.77661 -24.85526 -23.52699 -23.48208 -22.67048 -22.14387 -20.99476 -19.36499 -18.13292 -17.49223 -17.37742 -16.93385 -16.78555 -16.33312 -16.03490 -15.51013 -15.22276 -15.03982 -14.87797 -14.55636 -14.50073 -14.04004 -13.67798 -13.48444 -13.36643 -13.12630 -12.99510 -12.83696 -12.76964 -12.54552 -11.98358 -11.55338 -11.37829 -11.16360 -10.85293 -10.50903 -10.28270 -9.94220 -9.87280 -9.81784 -9.73631 -9.66166 -9.39752 -9.29762 -9.06397 -8.94547 -8.79090 -8.12179 -6.48742 -4.55941 0.48102 1.13492 1.35490 1.36465 2.56973 3.06304 3.12796 3.16855 3.23942 3.36275 3.44271 3.98454 4.02930 4.05618 4.36116 4.51900 4.78473 4.80584 4.92210 4.94322 4.98271 5.08463 5.11533 5.12854 5.16498 5.35324 5.48322 5.72099 5.87332 5.91248 6.03409 6.04989 6.07527 6.19582 6.24316 6.39571 6.44188 6.67516 6.77513 6.80194 6.91840 7.11753 7.25878 7.73129 7.89006 8.03459 8.09667 8.20985 8.46373 8.60285 9.06333 10.61432 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004576 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.264039 B = 6117.408757 C = 7943.798059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.089 3.911 3 Si 0.856 3.144 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.180 3.820 10 N -0.575 5.575 11 C 0.161 3.839 12 C -0.149 4.149 13 C -0.057 4.057 14 C -0.180 4.180 15 C 0.092 3.908 16 N -0.489 5.489 17 C 0.114 3.886 18 C 0.565 3.435 19 O -0.554 6.554 20 C -0.161 4.161 21 C -0.032 4.032 22 C -0.132 4.132 23 C 0.081 3.919 24 C 0.581 3.419 25 N -0.834 5.834 26 O -0.543 6.543 27 N -0.465 5.465 28 C 0.113 3.887 29 H 0.273 0.727 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.403 0.597 41 H 0.415 0.585 42 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.916 -1.798 -1.161 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.119 4.119 3 Si 0.681 3.319 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.059 3.941 10 N -0.303 5.303 11 C 0.037 3.963 12 C -0.152 4.152 13 C -0.083 4.083 14 C -0.200 4.200 15 C -0.065 4.065 16 N -0.197 5.197 17 C -0.044 4.044 18 C 0.353 3.647 19 O -0.434 6.434 20 C -0.166 4.166 21 C -0.059 4.059 22 C -0.153 4.153 23 C -0.057 4.057 24 C 0.364 3.636 25 N -0.397 5.397 26 O -0.420 6.420 27 N -0.176 5.176 28 C -0.044 4.044 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.234 0.766 41 H 0.246 0.754 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.974 -1.143 -1.171 10.107 hybrid contribution 0.463 -0.089 -0.454 0.655 sum 10.437 -1.232 -1.625 10.634 Atomic orbital electron populations 1.69864 1.06259 1.27938 1.46259 1.24888 0.94784 0.98931 0.93275 0.87130 0.80795 0.83966 0.80050 1.18506 1.20302 1.18489 1.21283 0.88470 0.95660 1.54097 0.89443 1.20686 0.96055 0.78326 0.99021 1.47764 1.61573 1.15744 1.05218 1.20222 0.92380 0.98223 0.85436 1.21417 0.98012 0.96953 0.98804 1.21678 0.92002 0.98275 0.96378 1.22123 0.98406 0.99975 0.99452 1.22727 0.97485 0.91195 0.95128 1.67716 1.00072 1.27990 1.23968 1.22825 0.94601 0.94798 0.92134 1.17999 0.77118 0.86376 0.83181 1.90685 1.51131 1.15408 1.86169 1.21260 0.99907 0.98928 0.96494 1.21642 0.95952 0.97371 0.90923 1.21936 0.99615 0.95044 0.98754 1.21312 0.94786 0.95390 0.94244 1.17963 0.80035 0.80156 0.85437 1.43665 1.39931 1.32302 1.23834 1.90792 1.40421 1.70594 1.40148 1.67844 1.19777 1.29414 1.00614 1.25681 0.96280 0.87899 0.94551 0.91717 0.94408 0.93394 0.88092 0.89034 0.84407 0.85103 0.83171 0.82448 0.83537 0.83346 0.76628 0.75361 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.70 13.96 55.43 0.77 -21.93 16 2 C 0.09 2.14 5.34 -17.82 -0.10 2.04 16 3 Si 0.86 17.89 27.35 -169.99 -4.65 13.25 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.24 6.54 56.52 0.37 -4.87 16 7 C -0.56 -12.85 8.03 -34.44 -0.28 -13.12 16 8 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.18 3.55 3.72 -5.19 -0.02 3.53 16 10 N -0.57 -10.46 2.45 -177.49 -0.43 -10.90 16 11 C 0.16 2.54 5.61 -5.19 -0.03 2.51 16 12 C -0.15 -2.19 5.48 -104.48 -0.57 -2.76 16 13 C -0.06 -0.77 9.86 -39.27 -0.39 -1.16 16 14 C -0.18 -2.11 10.11 -39.44 -0.40 -2.50 16 15 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 16 N -0.49 -7.27 10.36 -13.25 -0.14 -7.41 16 17 C 0.11 1.69 10.86 -17.55 -0.19 1.50 16 18 C 0.57 10.58 7.48 -12.25 -0.09 10.49 16 19 O -0.55 -10.85 16.26 5.34 0.09 -10.76 16 20 C -0.16 -2.87 5.60 -104.73 -0.59 -3.45 16 21 C -0.03 -0.50 9.72 -38.89 -0.38 -0.88 16 22 C -0.13 -1.97 9.62 -39.11 -0.38 -2.34 16 23 C 0.08 1.31 6.75 -82.94 -0.56 0.75 16 24 C 0.58 8.78 8.09 -12.11 -0.10 8.68 16 25 N -0.83 -9.79 8.86 30.64 0.27 -9.52 16 26 O -0.54 -9.29 17.15 5.37 0.09 -9.20 16 27 N -0.46 -8.22 9.52 -9.48 -0.09 -8.31 16 28 C 0.11 2.13 8.67 -17.17 -0.15 1.99 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.04 0.74 7.19 -51.93 -0.37 0.36 16 31 H 0.05 0.96 3.53 -51.93 -0.18 0.78 16 32 H 0.10 1.55 8.02 -51.93 -0.42 1.13 16 33 H 0.09 1.43 7.30 -51.93 -0.38 1.05 16 34 H 0.14 1.84 8.01 -52.49 -0.42 1.42 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.16 2.23 8.06 -52.48 -0.42 1.80 16 38 H 0.15 1.96 7.97 -52.49 -0.42 1.54 16 39 H 0.15 1.93 7.63 -52.48 -0.40 1.53 16 40 H 0.40 3.67 8.93 -40.82 -0.36 3.31 16 41 H 0.42 4.76 8.15 -40.82 -0.33 4.43 16 42 H 0.23 4.79 2.86 -52.48 -0.15 4.64 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -29.16 362.92 -7.32 -36.48 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -4.30 Total: 16.61 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -4.40 Total: 6.22 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.38 Total: -58.07 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.18 Total: -19.96 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.65 Total: 13.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.16 -7.32 -36.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354507450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.369 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds