Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47043 * 269.99974 * 3 2 1 5 5 H 1.48503 * 109.46738 * 29.99869 * 3 2 1 6 6 H 1.48498 * 109.47345 * 149.99716 * 3 2 1 7 7 C 1.37877 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99963 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00553 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47355 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99714 * 95.90242 * 10 9 7 12 12 C 1.50702 * 109.46962 * 90.00063 * 11 10 9 13 13 C 1.38676 * 120.41371 * 269.71420 * 12 11 10 14 14 C 1.38625 * 118.41647 * 179.78825 * 13 12 11 15 15 C 1.38225 * 119.16381 * 0.51275 * 14 13 12 16 16 N 1.31855 * 120.76111 * 359.72957 * 15 14 13 17 17 C 1.31887 * 121.72671 * 359.97438 * 16 15 14 18 18 C 1.34772 * 120.00165 * 275.62324 * 10 9 7 19 19 O 1.21491 * 120.00162 * 185.31157 * 18 10 9 20 20 C 1.48340 * 119.99709 * 5.30953 * 18 10 9 21 21 C 1.39310 * 119.56914 * 186.03253 * 20 18 10 22 22 C 1.38454 * 119.18721 * 179.79274 * 21 20 18 23 23 C 1.39868 * 118.35622 * 0.48072 * 22 21 20 24 24 C 1.48007 * 120.45770 * 179.76847 * 23 22 21 25 25 N 1.34775 * 119.99646 * 179.97438 * 24 23 22 26 26 O 1.21533 * 120.00233 * 359.97327 * 24 23 22 27 27 C 1.39719 * 119.07695 * 359.74353 * 23 22 21 28 28 N 1.31418 * 120.72204 * 0.02562 * 27 23 22 29 29 H 0.96998 * 119.99777 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47053 * 60.00416 * 9 7 2 31 31 H 1.08994 * 109.47234 * 300.00694 * 9 7 2 32 32 H 1.09002 * 109.46339 * 209.99766 * 11 10 9 33 33 H 1.08999 * 109.47181 * 329.99912 * 11 10 9 34 34 H 1.08000 * 120.79070 * 0.03147 * 13 12 11 35 35 H 1.08006 * 120.42185 * 180.22550 * 14 13 12 36 36 H 1.07999 * 119.62220 * 179.75224 * 15 14 13 37 37 H 1.08000 * 119.61569 * 180.02562 * 17 16 15 38 38 H 1.07996 * 120.40081 * 0.02562 * 21 20 18 39 39 H 1.07998 * 120.81729 * 180.22328 * 22 21 20 40 40 H 0.96996 * 120.00000 * 0.02562 * 25 24 23 41 41 H 0.97004 * 119.99518 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.64200 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.3664 -3.2228 -1.2620 12 6 5.8247 -2.9737 -1.5492 13 6 6.2161 -1.8640 -2.2829 14 6 7.5687 -1.6727 -2.5189 15 6 8.4749 -2.5937 -2.0278 16 7 8.0661 -3.6405 -1.3381 17 6 6.7881 -3.8511 -1.0895 18 6 4.1170 -3.2487 1.1617 19 8 4.6118 -4.3582 1.1735 20 6 3.6419 -2.6349 2.4258 21 6 3.8805 -3.2817 3.6363 22 6 3.4374 -2.6996 4.8118 23 6 2.7543 -1.4816 4.7336 24 6 2.2557 -0.8209 5.9605 25 7 1.5990 0.3529 5.8744 26 8 2.4384 -1.3368 7.0457 27 6 2.5496 -0.8971 3.4811 28 7 2.9901 -1.4794 2.3884 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6799 0.8895 31 1 3.8746 -0.6809 -0.8904 32 1 4.1893 -4.2956 -1.1848 33 1 3.7615 -2.8119 -2.0703 34 1 5.4849 -1.1633 -2.6581 35 1 7.9098 -0.8174 -3.0834 36 1 9.5301 -2.4541 -2.2108 37 1 6.4911 -4.7197 -0.5206 38 1 4.4081 -4.2238 3.6578 39 1 3.6113 -3.1764 5.7651 40 1 1.4529 0.7644 5.0083 41 1 1.2719 0.7857 6.6785 42 1 2.0236 0.0435 3.4101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355817636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = 6.117262 kcal Electronic energy + Delta-G solvation = -29238.075924 eV Core-core repulsion = 25183.314411 eV Total energy + Delta-G solvation = -4054.761513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99714 -41.21629 -40.49518 -39.42258 -37.09334 -34.99760 -34.67589 -33.87905 -33.29180 -32.70867 -32.13429 -29.81155 -28.00650 -26.02854 -24.70004 -24.64960 -24.10509 -23.28604 -22.10542 -20.79683 -19.19493 -18.95839 -18.59336 -18.08646 -17.96924 -17.47774 -17.08395 -16.71010 -16.47669 -16.15612 -16.06126 -15.98595 -15.70512 -15.36369 -14.88511 -14.65402 -14.60142 -14.41091 -14.27398 -14.02093 -13.93742 -13.72236 -13.36283 -13.14724 -12.86712 -12.51534 -12.31585 -11.96417 -11.58237 -11.51752 -11.29099 -11.02812 -10.80724 -10.76445 -10.55388 -10.44734 -10.31717 -10.10861 -9.86721 -9.47311 -8.08188 -6.05039 -0.78736 0.12534 0.21329 0.34254 1.35406 1.44844 1.49776 1.58873 2.00277 2.13144 2.38558 2.48878 2.83325 2.93791 3.13402 3.29955 3.54029 3.59711 3.67655 3.79918 3.88711 3.90791 3.95368 4.07816 4.11044 4.12527 4.46129 4.60853 4.67282 4.73222 4.74468 4.86838 4.89021 4.90506 5.14004 5.21246 5.35189 5.43477 5.63170 5.72184 5.78740 5.79614 6.23977 6.28149 6.53383 6.76753 6.88536 7.02569 7.13778 7.16748 7.52135 9.08812 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004402 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.550513 B = 6358.908627 C = 8057.038821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.031 3.969 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.244 1.244 7 C -0.474 4.474 8 H 0.022 0.978 9 C 0.222 3.778 10 N -0.570 5.570 11 C 0.159 3.841 12 C -0.157 4.157 13 C -0.069 4.069 14 C -0.167 4.167 15 C 0.088 3.912 16 N -0.514 5.514 17 C 0.105 3.895 18 C 0.561 3.439 19 O -0.566 6.566 20 C 0.079 3.921 21 C -0.119 4.119 22 C -0.028 4.028 23 C -0.175 4.175 24 C 0.575 3.425 25 N -0.827 5.827 26 O -0.574 6.574 27 C 0.121 3.879 28 N -0.414 5.414 29 H 0.262 0.738 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.414 0.586 41 H 0.418 0.582 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 3.083 1.799 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.513 4.513 8 H 0.040 0.960 9 C 0.101 3.899 10 N -0.298 5.298 11 C 0.036 3.964 12 C -0.161 4.161 13 C -0.095 4.095 14 C -0.187 4.187 15 C -0.069 4.069 16 N -0.223 5.223 17 C -0.051 4.051 18 C 0.348 3.652 19 O -0.447 6.447 20 C -0.058 4.058 21 C -0.140 4.140 22 C -0.054 4.054 23 C -0.181 4.181 24 C 0.360 3.640 25 N -0.391 5.391 26 O -0.454 6.454 27 C -0.040 4.040 28 N -0.124 5.124 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.165 0.835 35 H 0.186 0.814 36 H 0.201 0.799 37 H 0.164 0.836 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.246 0.754 41 H 0.251 0.749 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.150 1.973 1.849 11.474 hybrid contribution -1.218 1.199 0.260 1.729 sum 9.932 3.172 2.109 10.638 Atomic orbital electron populations 1.70056 1.08027 1.27512 1.53538 1.25336 0.94872 1.01613 0.94771 0.86111 0.80145 0.80039 0.79030 1.20173 1.20774 1.16795 1.21030 0.90165 0.92470 1.47664 0.95963 1.20006 0.93858 0.78011 0.98059 1.47933 1.60799 1.15832 1.05197 1.20329 0.90747 0.99148 0.86199 1.21222 0.97086 0.97421 1.00334 1.21864 0.97576 0.95427 0.94643 1.22482 0.92978 1.01683 1.01530 1.23355 1.01869 0.89218 0.92440 1.67726 1.17920 1.22195 1.14439 1.22720 0.88018 0.98640 0.95744 1.18195 0.78486 0.84644 0.83856 1.90658 1.46988 1.20291 1.86778 1.21466 0.97017 0.93202 0.94149 1.22187 0.99443 1.01431 0.90939 1.21817 0.91684 0.92452 0.99435 1.21230 1.03708 0.98426 0.94716 1.18005 0.77271 0.81329 0.87412 1.43602 1.58231 1.22603 1.14672 1.90784 1.59304 1.65662 1.29685 1.23377 0.94805 0.99512 0.86290 1.68612 1.05590 1.08277 1.29948 0.92859 0.92005 0.95099 0.89734 0.88214 0.83474 0.81370 0.79896 0.83613 0.82116 0.81444 0.75376 0.74878 0.81022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.63 13.96 21.45 0.30 -52.33 16 2 C 0.03 1.55 5.47 84.65 0.46 2.02 16 3 Si 0.92 37.17 27.47 68.60 1.88 39.05 16 4 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.24 -9.04 6.54 99.48 0.65 -8.39 16 7 C -0.47 -23.44 7.91 25.60 0.20 -23.24 16 8 H 0.02 1.30 8.06 -2.90 -0.02 1.27 16 9 C 0.22 9.13 3.82 85.63 0.33 9.46 16 10 N -0.57 -22.06 2.45 -833.36 -2.05 -24.10 16 11 C 0.16 5.25 5.49 85.63 0.47 5.72 16 12 C -0.16 -4.70 5.48 -19.77 -0.11 -4.81 16 13 C -0.07 -1.72 9.86 22.47 0.22 -1.50 16 14 C -0.17 -3.42 10.11 22.36 0.23 -3.19 16 15 C 0.09 1.99 11.18 84.69 0.95 2.93 16 16 N -0.51 -15.20 10.36 -195.85 -2.03 -17.23 16 17 C 0.11 3.30 10.73 84.67 0.91 4.21 16 18 C 0.56 22.35 7.60 86.93 0.66 23.01 16 19 O -0.57 -23.10 15.16 -3.69 -0.06 -23.15 16 20 C 0.08 2.96 6.56 41.96 0.28 3.24 16 21 C -0.12 -3.69 9.62 22.58 0.22 -3.48 16 22 C -0.03 -0.77 9.71 22.72 0.22 -0.55 16 23 C -0.18 -4.99 5.90 -19.93 -0.12 -5.11 16 24 C 0.58 15.17 8.06 86.83 0.70 15.87 16 25 N -0.83 -15.14 8.83 -175.49 -1.55 -16.69 16 26 O -0.57 -18.48 17.25 -3.82 -0.07 -18.55 16 27 C 0.12 3.83 10.71 85.11 0.91 4.74 16 28 N -0.41 -15.81 4.72 -183.90 -0.87 -16.68 16 29 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.06 2.58 4.84 -2.39 -0.01 2.57 16 31 H 0.03 1.20 7.46 -2.39 -0.02 1.18 16 32 H 0.08 2.82 7.46 -2.39 -0.02 2.81 16 33 H 0.10 3.13 8.02 -2.39 -0.02 3.11 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.15 4.85 7.38 -2.91 -0.02 4.83 16 38 H 0.16 4.52 7.64 -2.91 -0.02 4.50 16 39 H 0.17 3.99 7.73 -2.91 -0.02 3.96 16 40 H 0.41 6.37 6.89 -92.71 -0.64 5.73 16 41 H 0.42 5.88 8.93 -92.71 -0.83 5.05 16 42 H 0.17 4.66 6.41 -2.91 -0.02 4.65 16 Total: -1.00 -70.42 362.46 1.68 -68.74 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.42 Total: 31.60 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 6.53 Total: 29.33 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -6.19 Total: -127.03 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.12 Total: -41.70 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 1.88 Total: 39.05 kcal Total: -70.42 1.68 -68.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355817636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.859 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds