Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47172 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.47263 * 29.99764 * 3 2 1 6 6 H 1.48503 * 109.47227 * 149.99830 * 3 2 1 7 7 C 1.40121 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00772 * 180.02562 * 7 2 1 9 9 C 1.46167 * 119.99937 * 359.97438 * 7 2 1 10 10 O 1.21751 * 119.99519 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00243 * 180.02562 * 9 7 2 12 12 C 1.39522 * 120.00116 * 174.98173 * 11 9 7 13 13 C 1.39112 * 120.04714 * 145.98279 * 12 11 9 14 14 C 1.38093 * 120.05190 * 180.02562 * 13 12 11 15 15 C 1.38225 * 120.15219 * 0.02562 * 14 13 12 16 16 C 1.38964 * 120.09597 * 359.95572 * 15 14 13 17 17 N 1.39938 * 120.03072 * 180.02562 * 16 15 14 18 18 C 1.34774 * 119.99786 * 326.55984 * 17 16 15 19 19 O 1.21586 * 120.00156 * 354.52832 * 18 17 16 20 20 N 1.34774 * 120.00285 * 174.52794 * 18 17 16 21 21 C 1.46496 * 120.00525 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47478 * 180.02562 * 21 20 18 23 23 C 1.38649 * 120.78804 * 269.72136 * 22 21 20 24 24 C 1.38202 * 119.15894 * 179.79480 * 23 22 21 25 25 N 1.31870 * 120.76633 * 0.48936 * 24 23 22 26 26 C 1.31874 * 121.72255 * 359.73779 * 25 24 23 27 27 C 1.38201 * 120.76483 * 0.02562 * 26 25 24 28 28 C 1.38709 * 119.94458 * 359.79009 * 16 15 14 29 29 H 0.96991 * 120.00394 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00100 * 355.25801 * 11 9 7 31 31 H 1.07999 * 119.97353 * 0.02562 * 13 12 11 32 32 H 1.08000 * 119.92151 * 179.97438 * 14 13 12 33 33 H 1.07997 * 119.95766 * 179.97438 * 15 14 13 34 34 H 0.96992 * 119.99911 * 146.55688 * 17 16 15 35 35 H 0.97001 * 119.99557 * 0.02562 * 20 18 17 36 36 H 1.08996 * 109.46818 * 300.00637 * 21 20 18 37 37 H 1.09000 * 109.47152 * 60.00270 * 21 20 18 38 38 H 1.07995 * 120.41936 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.61587 * 180.20555 * 24 23 22 40 40 H 1.08005 * 119.61364 * 180.02562 * 26 25 24 41 41 H 1.07997 * 120.41405 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.07539 * 180.23453 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5378 1.4403 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2763 -2.4793 0.0017 10 8 0.0588 -2.4793 0.0017 11 7 1.9502 -3.6464 0.0027 12 6 1.2567 -4.8524 0.1095 13 6 1.7222 -5.9845 -0.5515 14 6 1.0356 -7.1780 -0.4463 15 6 -0.1158 -7.2518 0.3149 16 6 -0.5862 -6.1249 0.9781 17 7 -1.7517 -6.2013 1.7488 18 6 -2.7523 -7.0244 1.3775 19 8 -2.6855 -7.6251 0.3226 20 7 -3.8268 -7.1816 2.1757 21 6 -4.9147 -8.0759 1.7719 22 6 -5.9869 -8.0727 2.8309 23 6 -5.9538 -8.9819 3.8771 24 6 -6.9522 -8.9462 4.8321 25 7 -7.9323 -8.0678 4.7508 26 6 -7.9983 -7.1914 3.7675 27 6 -7.0330 -7.1642 2.7789 28 6 0.1033 -4.9253 0.8795 29 1 -0.4850 0.8399 -0.0004 30 1 2.9177 -3.6479 -0.0667 31 1 2.6213 -5.9299 -1.1473 32 1 1.3986 -8.0555 -0.9606 33 1 -0.6506 -8.1867 0.3947 34 1 -1.8394 -5.6620 2.5502 35 1 -3.8802 -6.7021 3.0172 36 1 -5.3362 -7.7318 0.8275 37 1 -4.5272 -9.0873 1.6498 38 1 -5.1560 -9.7064 3.9469 39 1 -6.9318 -9.6488 5.6520 40 1 -8.8162 -6.4869 3.7345 41 1 -7.0928 -6.4444 1.9760 42 1 -0.2583 -4.0491 1.3971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356196077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = 3.648820 kcal Electronic energy + Delta-G solvation = -27260.468782 eV Core-core repulsion = 23205.600229 eV Total energy + Delta-G solvation = -4054.868552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78878 -40.26654 -38.90986 -37.05910 -35.63204 -34.58567 -33.25561 -32.64472 -32.30731 -31.63405 -29.56143 -28.66319 -26.86288 -26.21389 -23.88662 -22.84072 -22.45593 -21.93526 -20.86604 -19.76712 -18.53647 -17.88160 -17.17548 -16.86465 -16.71078 -15.98758 -15.89131 -15.57407 -15.43561 -15.28003 -14.54983 -14.40156 -14.23401 -14.13825 -13.98997 -13.91260 -13.23214 -13.02343 -12.81780 -12.61186 -12.44289 -12.05280 -11.91956 -11.48785 -11.29117 -11.16605 -11.00858 -10.65769 -10.41298 -10.36303 -10.08966 -9.92377 -9.89740 -9.58484 -9.32625 -9.16716 -8.86888 -7.89018 -7.64754 -7.05207 -6.36972 -4.84152 0.66928 0.70864 1.85188 2.09880 2.63048 3.05130 3.12376 3.15460 3.19259 3.42169 3.96925 4.03313 4.09187 4.16813 4.26932 4.33663 4.55067 4.64693 4.68387 4.70928 5.10024 5.14768 5.32325 5.38057 5.45380 5.51994 5.63167 5.74827 5.85517 5.89239 6.04768 6.10130 6.16361 6.26150 6.28114 6.66397 6.75476 6.98385 7.07358 7.11332 7.26206 7.47429 7.54305 7.72958 7.90469 8.05115 8.17417 8.52934 8.82990 9.21262 10.37031 10.54857 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.002208 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.000986 B =12676.977873 C =14489.886187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.543 3.457 10 O -0.559 6.559 11 N -0.700 5.700 12 C 0.209 3.791 13 C -0.188 4.188 14 C -0.085 4.085 15 C -0.162 4.162 16 C 0.176 3.824 17 N -0.678 5.678 18 C 0.706 3.294 19 O -0.571 6.571 20 N -0.743 5.743 21 C 0.180 3.820 22 C -0.062 4.062 23 C -0.154 4.154 24 C 0.096 3.904 25 N -0.482 5.482 26 C 0.098 3.902 27 C -0.152 4.152 28 C -0.154 4.154 29 H 0.271 0.729 30 H 0.394 0.606 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.405 0.595 35 H 0.398 0.602 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.139 0.861 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 -15.468 8.360 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.349 3.651 10 O -0.441 6.441 11 N -0.344 5.344 12 C 0.110 3.890 13 C -0.210 4.210 14 C -0.104 4.104 15 C -0.184 4.184 16 C 0.081 3.919 17 N -0.325 5.325 18 C 0.407 3.593 19 O -0.447 6.447 20 N -0.400 5.400 21 C 0.056 3.944 22 C -0.071 4.071 23 C -0.174 4.174 24 C -0.061 4.061 25 N -0.191 5.191 26 C -0.059 4.059 27 C -0.173 4.173 28 C -0.178 4.178 29 H 0.082 0.918 30 H 0.227 0.773 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.240 0.760 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.221 -15.818 8.045 20.479 hybrid contribution 1.420 1.401 0.002 1.994 sum -8.801 -14.417 8.047 18.710 Atomic orbital electron populations 1.69981 1.07160 1.27758 1.33905 1.25743 0.94696 1.00522 0.92515 0.86291 0.80128 0.80917 0.79017 1.19572 1.20320 1.18753 1.20858 0.93827 0.89013 1.53745 0.90978 1.18387 0.87497 0.82131 0.77064 1.90648 1.13671 1.86071 1.53707 1.44135 1.09579 1.04270 1.76374 1.17607 0.92732 0.86568 0.92120 1.20889 1.03211 0.93316 1.03601 1.20613 0.94596 0.96970 0.98206 1.20821 0.97534 0.97623 1.02414 1.17263 0.85820 0.93552 0.95243 1.42484 1.15699 1.45131 1.29181 1.15814 0.79560 0.80448 0.83486 1.90955 1.79688 1.51107 1.22945 1.45039 1.20034 1.50518 1.24374 1.20022 0.84294 0.95011 0.95105 1.20347 0.95813 0.95181 0.95764 1.22158 1.00492 0.99817 0.94920 1.22820 0.89654 0.95869 0.97717 1.67701 1.23954 1.03950 1.23520 1.22842 0.97704 0.95773 0.89581 1.22206 0.95024 0.99330 1.00691 1.20915 0.98453 0.95919 1.02504 0.91770 0.77265 0.86485 0.86423 0.85733 0.75998 0.76810 0.90052 0.90086 0.84412 0.82528 0.82435 0.84268 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.81 11.82 55.55 0.66 -21.16 16 2 C 0.09 2.30 5.50 -17.36 -0.10 2.21 16 3 Si 0.91 19.27 29.56 -169.99 -5.02 14.24 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.54 -14.48 9.53 -35.69 -0.34 -14.82 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.54 14.84 7.47 -13.08 -0.10 14.74 16 10 O -0.56 -17.25 12.74 5.14 0.07 -17.18 16 11 N -0.70 -15.53 5.32 -11.22 -0.06 -15.59 16 12 C 0.21 4.38 6.26 -83.80 -0.52 3.85 16 13 C -0.19 -3.32 9.97 -39.31 -0.39 -3.71 16 14 C -0.08 -1.39 10.03 -39.64 -0.40 -1.79 16 15 C -0.16 -2.86 8.65 -39.32 -0.34 -3.20 16 16 C 0.18 3.23 6.27 -83.71 -0.53 2.70 16 17 N -0.68 -10.19 5.35 -14.24 -0.08 -10.27 16 18 C 0.71 10.43 8.30 -86.92 -0.72 9.71 16 19 O -0.57 -10.51 14.04 5.29 0.07 -10.44 16 20 N -0.74 -7.61 5.55 -66.42 -0.37 -7.98 16 21 C 0.18 1.60 5.85 -5.19 -0.03 1.57 16 22 C -0.06 -0.47 5.29 -104.32 -0.55 -1.02 16 23 C -0.15 -1.04 9.82 -39.44 -0.39 -1.43 16 24 C 0.10 0.70 11.18 -17.55 -0.20 0.51 16 25 N -0.48 -4.40 10.36 -13.25 -0.14 -4.53 16 26 C 0.10 0.76 11.18 -17.55 -0.20 0.56 16 27 C -0.15 -1.12 9.82 -39.44 -0.39 -1.51 16 28 C -0.15 -3.25 8.56 -39.17 -0.34 -3.58 16 29 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 30 H 0.39 7.42 8.80 -40.82 -0.36 7.06 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.12 2.15 6.42 -52.49 -0.34 1.82 16 34 H 0.41 4.92 8.83 -40.82 -0.36 4.56 16 35 H 0.40 3.20 8.48 -40.82 -0.35 2.86 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 3.27 6.47 -52.49 -0.34 2.93 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -36.62 369.44 -9.49 -46.11 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -5.52 Total: 4.79 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.01 Total: -59.53 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: 0.14 Total: -27.62 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.62 -9.49 -46.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356196077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.761 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds