Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47172 * 269.99894 * 3 2 1 5 5 H 1.48498 * 109.47263 * 29.99764 * 3 2 1 6 6 H 1.48503 * 109.47227 * 149.99830 * 3 2 1 7 7 C 1.40121 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00772 * 180.02562 * 7 2 1 9 9 C 1.46167 * 119.99937 * 359.97438 * 7 2 1 10 10 O 1.21751 * 119.99519 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00243 * 180.02562 * 9 7 2 12 12 C 1.39522 * 120.00116 * 174.98173 * 11 9 7 13 13 C 1.39112 * 120.04714 * 145.98279 * 12 11 9 14 14 C 1.38093 * 120.05190 * 180.02562 * 13 12 11 15 15 C 1.38225 * 120.15219 * 0.02562 * 14 13 12 16 16 C 1.38964 * 120.09597 * 359.95572 * 15 14 13 17 17 N 1.39938 * 120.03072 * 180.02562 * 16 15 14 18 18 C 1.34774 * 119.99786 * 326.55984 * 17 16 15 19 19 O 1.21586 * 120.00156 * 354.52832 * 18 17 16 20 20 N 1.34774 * 120.00285 * 174.52794 * 18 17 16 21 21 C 1.46496 * 120.00525 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.47478 * 180.02562 * 21 20 18 23 23 C 1.38649 * 120.78804 * 269.72136 * 22 21 20 24 24 C 1.38202 * 119.15894 * 179.79480 * 23 22 21 25 25 N 1.31870 * 120.76633 * 0.48936 * 24 23 22 26 26 C 1.31874 * 121.72255 * 359.73779 * 25 24 23 27 27 C 1.38201 * 120.76483 * 0.02562 * 26 25 24 28 28 C 1.38709 * 119.94458 * 359.79009 * 16 15 14 29 29 H 0.96991 * 120.00394 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00100 * 355.25801 * 11 9 7 31 31 H 1.07999 * 119.97353 * 0.02562 * 13 12 11 32 32 H 1.08000 * 119.92151 * 179.97438 * 14 13 12 33 33 H 1.07997 * 119.95766 * 179.97438 * 15 14 13 34 34 H 0.96992 * 119.99911 * 146.55688 * 17 16 15 35 35 H 0.97001 * 119.99557 * 0.02562 * 20 18 17 36 36 H 1.08996 * 109.46818 * 300.00637 * 21 20 18 37 37 H 1.09000 * 109.47152 * 60.00270 * 21 20 18 38 38 H 1.07995 * 120.41936 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.61587 * 180.20555 * 24 23 22 40 40 H 1.08005 * 119.61364 * 180.02562 * 26 25 24 41 41 H 1.07997 * 120.41405 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.07539 * 180.23453 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5378 1.4403 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2135 0.0010 9 6 1.2763 -2.4793 0.0017 10 8 0.0588 -2.4793 0.0017 11 7 1.9502 -3.6464 0.0027 12 6 1.2567 -4.8524 0.1095 13 6 1.7222 -5.9845 -0.5515 14 6 1.0356 -7.1780 -0.4463 15 6 -0.1158 -7.2518 0.3149 16 6 -0.5862 -6.1249 0.9781 17 7 -1.7517 -6.2013 1.7488 18 6 -2.7523 -7.0244 1.3775 19 8 -2.6855 -7.6251 0.3226 20 7 -3.8268 -7.1816 2.1757 21 6 -4.9147 -8.0759 1.7719 22 6 -5.9869 -8.0727 2.8309 23 6 -5.9538 -8.9819 3.8771 24 6 -6.9522 -8.9462 4.8321 25 7 -7.9323 -8.0678 4.7508 26 6 -7.9983 -7.1914 3.7675 27 6 -7.0330 -7.1642 2.7789 28 6 0.1033 -4.9253 0.8795 29 1 -0.4850 0.8399 -0.0004 30 1 2.9177 -3.6479 -0.0667 31 1 2.6213 -5.9299 -1.1473 32 1 1.3986 -8.0555 -0.9606 33 1 -0.6506 -8.1867 0.3947 34 1 -1.8394 -5.6620 2.5502 35 1 -3.8802 -6.7021 3.0172 36 1 -5.3362 -7.7318 0.8275 37 1 -4.5272 -9.0873 1.6498 38 1 -5.1560 -9.7064 3.9469 39 1 -6.9318 -9.6488 5.6520 40 1 -8.8162 -6.4869 3.7345 41 1 -7.0928 -6.4444 1.9760 42 1 -0.2583 -4.0491 1.3971 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356196077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -23.440201 kcal Electronic energy + Delta-G solvation = -27261.643450 eV Core-core repulsion = 23205.600229 eV Total energy + Delta-G solvation = -4056.043220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81638 -41.12658 -40.46034 -38.74236 -36.64973 -35.98589 -34.97029 -34.39158 -33.39832 -32.18076 -31.02975 -30.17264 -28.17867 -27.70160 -24.44371 -24.12597 -23.83132 -22.84397 -22.31109 -21.34655 -19.80105 -19.44686 -18.69796 -17.60718 -17.56222 -17.47884 -17.12905 -16.71424 -16.53666 -16.50008 -16.03416 -15.76265 -15.62583 -15.35157 -14.74144 -14.71557 -14.63999 -14.45577 -14.18593 -13.98083 -13.56319 -13.50829 -13.19666 -12.84330 -12.80110 -12.71196 -12.54653 -12.47203 -12.03907 -11.56915 -11.46973 -10.99313 -10.79810 -10.62038 -10.49991 -10.29943 -10.12154 -9.91146 -9.16836 -8.68160 -8.36590 -6.93962 0.04549 0.16200 0.43024 0.58626 1.40107 1.40883 1.56017 1.57254 1.97450 2.21115 2.39400 2.79007 2.91238 3.03449 3.19058 3.39733 3.58131 3.59848 3.76905 4.09209 4.11355 4.17301 4.36007 4.40963 4.44682 4.52348 4.65449 4.65587 4.71183 4.85787 4.87546 4.93142 5.22352 5.25909 5.30482 5.33276 5.42739 5.53092 5.61452 5.71635 5.81708 5.82517 6.04339 6.18031 6.43096 6.78466 6.83373 6.98028 7.35484 7.36710 8.36714 8.57146 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.002208 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.000986 B =12676.977873 C =14489.886187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.030 3.970 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.564 4.564 8 H 0.094 0.906 9 C 0.529 3.471 10 O -0.606 6.606 11 N -0.692 5.692 12 C 0.177 3.823 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.163 4.163 16 C 0.175 3.825 17 N -0.676 5.676 18 C 0.705 3.295 19 O -0.607 6.607 20 N -0.723 5.723 21 C 0.182 3.818 22 C -0.066 4.066 23 C -0.149 4.149 24 C 0.089 3.911 25 N -0.508 5.508 26 C 0.088 3.912 27 C -0.156 4.156 28 C -0.178 4.178 29 H 0.277 0.723 30 H 0.409 0.591 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.132 0.868 34 H 0.416 0.584 35 H 0.411 0.589 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.147 0.853 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -16.441 8.499 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.600 4.600 8 H 0.112 0.888 9 C 0.336 3.664 10 O -0.492 6.492 11 N -0.336 5.336 12 C 0.079 3.921 13 C -0.202 4.202 14 C -0.092 4.092 15 C -0.184 4.184 16 C 0.080 3.920 17 N -0.324 5.324 18 C 0.406 3.594 19 O -0.487 6.487 20 N -0.380 5.380 21 C 0.059 3.941 22 C -0.075 4.075 23 C -0.169 4.169 24 C -0.068 4.068 25 N -0.218 5.218 26 C -0.068 4.068 27 C -0.176 4.176 28 C -0.202 4.202 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.163 0.837 32 H 0.177 0.823 33 H 0.150 0.850 34 H 0.253 0.747 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.175 0.825 39 H 0.196 0.804 40 H 0.191 0.809 41 H 0.165 0.835 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.004 -16.838 8.235 20.794 hybrid contribution 0.968 1.531 -0.007 1.811 sum -8.037 -15.307 8.228 19.147 Atomic orbital electron populations 1.70145 1.09553 1.29271 1.35288 1.26994 0.95544 1.04990 0.91138 0.84977 0.78831 0.74837 0.79450 1.18681 1.19805 1.17009 1.21404 0.95038 0.89536 1.54020 0.88842 1.18736 0.87191 0.83822 0.76637 1.90607 1.15634 1.87192 1.55768 1.43679 1.10191 1.03743 1.76022 1.17937 0.93378 0.87040 0.93738 1.21152 1.03938 0.92304 1.02771 1.21077 0.93419 0.97783 0.96931 1.21064 0.97929 0.97365 1.02078 1.17316 0.86417 0.92902 0.95378 1.42442 1.15180 1.45467 1.29263 1.15938 0.80103 0.79972 0.83430 1.90920 1.80582 1.52535 1.24633 1.44926 1.18904 1.50087 1.24043 1.20062 0.84012 0.94722 0.95311 1.20246 0.95528 0.95897 0.95821 1.22348 1.00729 0.99638 0.94154 1.23232 0.89251 0.95849 0.98427 1.67722 1.24963 1.04787 1.24280 1.23141 0.98308 0.95981 0.89399 1.22329 0.94952 0.99457 1.00865 1.20723 0.99752 0.95789 1.03898 0.91330 0.75532 0.83658 0.82320 0.85024 0.74700 0.75328 0.90841 0.89610 0.82525 0.80359 0.80867 0.83526 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.31 11.82 21.85 0.26 -48.05 16 2 C 0.03 1.59 5.50 85.33 0.47 2.06 16 3 Si 1.00 39.40 29.56 68.60 2.03 41.43 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.56 -30.80 9.53 24.79 0.24 -30.57 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.53 30.02 7.47 86.30 0.64 30.67 16 10 O -0.61 -39.44 12.74 -4.51 -0.06 -39.50 16 11 N -0.69 -31.31 5.32 -307.59 -1.64 -32.95 16 12 C 0.18 7.50 6.26 38.28 0.24 7.74 16 13 C -0.18 -6.04 9.97 22.45 0.22 -5.82 16 14 C -0.07 -2.21 10.03 22.23 0.22 -1.98 16 15 C -0.16 -5.52 8.65 22.44 0.19 -5.33 16 16 C 0.18 6.52 6.27 38.13 0.24 6.76 16 17 N -0.68 -20.60 5.35 -317.23 -1.70 -22.29 16 18 C 0.70 20.63 8.30 179.06 1.49 22.11 16 19 O -0.61 -22.16 14.04 -3.99 -0.06 -22.22 16 20 N -0.72 -14.26 5.55 -482.31 -2.68 -16.94 16 21 C 0.18 3.08 5.85 85.63 0.50 3.58 16 22 C -0.07 -0.92 5.29 -19.67 -0.10 -1.03 16 23 C -0.15 -1.75 9.82 22.36 0.22 -1.53 16 24 C 0.09 1.17 11.18 84.68 0.95 2.12 16 25 N -0.51 -8.79 10.36 -195.84 -2.03 -10.82 16 26 C 0.09 1.30 11.18 84.68 0.95 2.24 16 27 C -0.16 -2.18 9.82 22.36 0.22 -1.96 16 28 C -0.18 -7.81 8.56 22.54 0.19 -7.62 16 29 H 0.28 14.87 8.29 -92.71 -0.77 14.10 16 30 H 0.41 15.38 8.80 -92.71 -0.82 14.56 16 31 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.13 4.33 6.42 -2.91 -0.02 4.31 16 34 H 0.42 10.44 8.83 -92.71 -0.82 9.62 16 35 H 0.41 6.20 8.48 -92.71 -0.79 5.41 16 36 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 38 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.10 5.24 6.47 -2.91 -0.02 5.22 16 Total: -1.00 -82.81 369.44 -0.30 -83.11 By element: Atomic # 1 Polarization: 48.09 SS G_CDS: -1.31 Total: 46.78 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 6.88 Total: 21.45 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -7.78 Total: -131.04 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -0.11 Total: -61.72 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -82.81 -0.30 -83.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356196077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.667 kcal (2) G-P(sol) polarization free energy of solvation -82.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds