Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 120.11567 * 2 1 4 4 C 1.37932 * 120.34801 * 179.78779 * 3 2 1 5 5 C 1.39282 * 120.24551 * 0.03898 * 4 3 2 6 6 C 1.38887 * 118.87274 * 0.28713 * 5 4 3 7 7 C 1.37740 * 120.78632 * 359.52560 * 6 5 4 8 8 C 1.51644 * 107.04129 * 179.48720 * 6 5 4 9 9 H 1.09006 * 110.93836 * 226.42176 * 8 6 5 10 10 N 1.46497 * 110.93600 * 102.77375 * 8 6 5 11 11 S 1.65599 * 119.99802 * 144.99872 * 10 8 6 12 12 O 1.42101 * 106.40362 * 311.45822 * 11 10 8 13 13 O 1.42104 * 106.40245 * 178.54279 * 11 10 8 14 14 N 1.65597 * 107.22076 * 64.99924 * 11 10 8 15 15 C 1.46496 * 119.99932 * 270.00261 * 14 11 10 16 16 C 1.46502 * 119.99841 * 89.99898 * 14 11 10 17 17 H 1.09001 * 109.47315 * 359.97438 * 16 14 11 18 18 C 1.53002 * 109.46961 * 240.00192 * 16 14 11 19 19 C 1.50696 * 109.47100 * 120.00588 * 16 14 11 20 20 H 1.07997 * 120.00298 * 29.57956 * 19 16 14 21 21 C 1.37882 * 119.99753 * 209.58574 * 19 16 14 22 22 N 1.31514 * 119.99972 * 353.18627 * 21 19 16 23 23 Si 1.86800 * 119.99976 * 173.18811 * 21 19 16 24 24 H 1.48498 * 109.47353 * 59.99893 * 23 21 19 25 25 H 1.48502 * 109.47043 * 299.99765 * 23 21 19 26 26 H 1.48494 * 109.47159 * 180.02562 * 23 21 19 27 27 C 1.54701 * 101.92459 * 344.61561 * 8 6 5 28 28 O 1.36134 * 129.89224 * 180.96364 * 5 4 3 29 29 H 1.09005 * 109.47048 * 270.02458 * 1 2 3 30 30 H 1.09004 * 109.47532 * 30.02316 * 1 2 3 31 31 H 1.09002 * 109.47090 * 150.02304 * 1 2 3 32 32 H 1.07999 * 119.82599 * 359.80419 * 3 2 1 33 33 H 1.07998 * 119.87699 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.01438 * 180.31295 * 7 6 5 35 35 H 0.97000 * 120.00440 * 325.00232 * 10 8 6 36 36 H 1.09002 * 109.46838 * 269.99157 * 15 14 11 37 37 H 1.08995 * 109.47406 * 29.99664 * 15 14 11 38 38 H 1.09003 * 109.46972 * 149.99877 * 15 14 11 39 39 H 1.08998 * 109.47121 * 66.36896 * 18 16 14 40 40 H 1.09000 * 109.47468 * 186.36800 * 18 16 14 41 41 H 1.08997 * 109.47315 * 306.37155 * 18 16 14 42 42 H 0.96998 * 119.99721 * 354.90721 * 22 21 19 43 43 H 1.09006 * 110.74576 * 143.60869 * 27 8 6 44 44 H 1.09001 * 110.75378 * 266.95711 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1962 0.0000 4 6 3.5801 1.2018 0.0044 5 6 4.2866 0.0015 0.0081 6 6 3.5786 -1.1934 0.0011 7 6 2.2012 -1.1967 0.0006 8 6 4.5994 -2.3148 -0.0057 9 1 4.3425 -3.0709 -0.7477 10 7 4.7283 -2.9134 1.3251 11 16 5.0150 -4.5372 1.4783 12 8 4.0768 -5.1916 0.6353 13 8 5.1209 -4.7963 2.8716 14 7 6.5106 -4.8340 0.8325 15 6 6.6422 -5.1660 -0.5883 16 6 7.7022 -4.7646 1.6819 17 1 7.4086 -4.5062 2.6994 18 6 8.6538 -3.6964 1.1394 19 6 8.3967 -6.1020 1.6833 20 1 8.3285 -6.7469 0.8197 21 6 9.1193 -6.5024 2.7873 22 7 9.3150 -5.6666 3.7836 23 14 9.8202 -8.2321 2.8677 24 1 10.7544 -8.4409 1.7324 25 1 8.7135 -9.2189 2.7860 26 1 10.5493 -8.4117 4.1488 27 6 5.8937 -1.5664 -0.4031 28 8 5.6294 -0.2213 0.0302 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6599 2.1310 -0.0032 33 1 4.1143 2.1405 0.0048 34 1 1.6632 -2.1332 0.0002 35 1 4.6457 -2.3587 2.1166 36 1 6.5735 -6.2462 -0.7169 37 1 5.8436 -4.6816 -1.1501 38 1 7.6076 -4.8171 -0.9550 39 1 8.1939 -2.7137 1.2432 40 1 9.5873 -3.7219 1.7015 41 1 8.8581 -3.8926 0.0868 42 1 9.0155 -4.7469 3.7110 43 1 6.7551 -1.9791 0.1222 44 1 6.0447 -1.6019 -1.4820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374577507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -81.528374 kcal Electronic energy + Delta-G solvation = -28707.898935 eV Core-core repulsion = 24752.488022 eV Total energy + Delta-G solvation = -3955.410912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37479 -38.00430 -36.79373 -36.45182 -35.32641 -35.10574 -32.75537 -32.14621 -31.11420 -29.27482 -28.59206 -26.79232 -25.80873 -24.80133 -23.48077 -22.02766 -21.25456 -21.00187 -19.17391 -17.79303 -17.68808 -17.02775 -16.88041 -16.55221 -16.33106 -15.47513 -15.22711 -14.80507 -14.15548 -13.94667 -13.88130 -13.81118 -13.68688 -13.57470 -13.27057 -13.08553 -12.63877 -12.39361 -12.29393 -12.16281 -12.04094 -11.98343 -11.64257 -11.53912 -11.52277 -11.38439 -11.13354 -11.00869 -10.97484 -10.73242 -10.70239 -10.21714 -10.10744 -9.63050 -9.17359 -9.04932 -8.51133 -8.23998 -7.94747 -6.46389 -4.19353 0.86572 1.15380 1.20952 3.09696 3.24008 3.40247 3.44635 3.56269 3.61818 3.99582 4.14395 4.33965 4.47592 4.59611 4.68401 4.82318 4.85764 5.01835 5.08961 5.12429 5.21662 5.29463 5.37895 5.44647 5.45526 5.47731 5.69054 5.77467 5.88411 5.92471 6.04731 6.16136 6.20360 6.32891 6.33918 6.36262 6.42893 6.47937 6.60989 6.91286 7.00229 7.05911 7.25768 7.56838 8.01331 8.35476 8.72900 9.50702 10.90825 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.003320 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.050056 B = 8430.892472 C = 8941.936140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.078 4.078 4 C -0.141 4.141 5 C 0.113 3.887 6 C -0.180 4.180 7 C -0.052 4.052 8 C 0.168 3.832 9 H 0.116 0.884 10 N -1.120 6.120 11 S 2.770 3.230 12 O -0.993 6.993 13 O -0.968 6.968 14 N -0.985 5.985 15 C 0.105 3.895 16 C 0.249 3.751 17 H 0.062 0.938 18 C -0.148 4.148 19 C -0.598 4.598 20 H 0.058 0.942 21 C 0.025 3.975 22 N -0.898 5.898 23 Si 1.066 2.934 24 H -0.287 1.287 25 H -0.287 1.287 26 H -0.281 1.281 27 C 0.029 3.971 28 O -0.297 6.297 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.415 0.585 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.271 0.729 43 H 0.123 0.877 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 13.309 -10.852 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.096 4.096 4 C -0.159 4.159 5 C 0.067 3.933 6 C -0.183 4.183 7 C -0.071 4.071 8 C 0.060 3.940 9 H 0.134 0.866 10 N -0.876 5.876 11 S 2.779 3.221 12 O -0.977 6.977 13 O -0.951 6.951 14 N -0.828 5.828 15 C -0.041 4.041 16 C 0.146 3.854 17 H 0.080 0.920 18 C -0.208 4.208 19 C -0.638 4.638 20 H 0.076 0.924 21 C -0.181 4.181 22 N -0.533 5.533 23 Si 0.894 3.106 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.207 1.207 27 C -0.048 4.048 28 O -0.211 6.211 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.140 0.860 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.952 11.619 -9.574 19.222 hybrid contribution -0.543 1.416 -0.892 1.759 sum -12.494 13.035 -10.465 20.870 Atomic orbital electron populations 1.20704 0.90704 1.02721 1.02331 1.19787 0.96263 0.92588 1.03695 1.20770 0.92720 0.97865 0.98264 1.20229 0.93458 0.95579 1.06662 1.19638 0.83574 0.94364 0.95698 1.20761 0.94643 0.94107 1.08767 1.20283 0.91758 0.98231 0.96803 1.20715 0.92182 0.95227 0.85896 0.86598 1.56430 1.88957 1.30192 1.11995 1.02422 0.73458 0.72686 0.73494 1.93538 1.61663 1.72870 1.69580 1.93635 1.86727 1.83028 1.31753 1.57961 1.24090 1.83011 1.17723 1.21207 1.01321 1.00871 0.80747 1.18910 0.81184 0.95916 0.89368 0.92019 1.22287 1.00902 0.96579 1.01018 1.22062 1.34107 1.03045 1.04562 0.92403 1.25863 0.95024 1.05293 0.91945 1.70794 1.43291 1.06397 1.32771 0.83587 0.76345 0.74474 0.76182 1.21343 1.21291 1.20653 1.24605 0.99449 0.79606 1.01120 1.86877 1.19543 1.32608 1.82022 0.91276 0.91600 0.91522 0.85191 0.85350 0.85471 0.75183 0.92835 0.93459 0.91015 0.96015 0.92124 0.93542 0.91757 0.85953 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.02 36.00 0.36 -0.40 16 2 C -0.12 -1.19 5.89 -104.56 -0.62 -1.80 16 3 C -0.08 -0.71 9.68 -39.67 -0.38 -1.09 16 4 C -0.14 -1.49 10.06 -39.31 -0.40 -1.88 16 5 C 0.11 1.43 7.04 -38.95 -0.27 1.16 16 6 C -0.18 -2.26 5.88 -104.10 -0.61 -2.87 16 7 C -0.05 -0.59 9.70 -39.72 -0.39 -0.98 16 8 C 0.17 2.19 3.81 -67.72 -0.26 1.93 16 9 H 0.12 1.41 6.99 -51.93 -0.36 1.05 16 10 N -1.12 -16.90 5.62 -4.71 -0.03 -16.92 16 11 S 2.77 53.76 6.07 -107.50 -0.65 53.11 16 12 O -0.99 -20.28 16.61 -57.17 -0.95 -21.23 16 13 O -0.97 -23.02 16.70 -57.17 -0.95 -23.97 16 14 N -0.98 -19.39 3.12 -115.86 -0.36 -19.76 16 15 C 0.10 1.72 9.37 59.84 0.56 2.28 16 16 C 0.25 5.77 2.27 -69.08 -0.16 5.61 16 17 H 0.06 1.61 5.69 -51.93 -0.30 1.32 16 18 C -0.15 -2.96 9.07 37.16 0.34 -2.62 16 19 C -0.60 -15.75 8.28 -34.44 -0.29 -16.04 16 20 H 0.06 1.50 7.38 -52.49 -0.39 1.12 16 21 C 0.03 0.70 5.45 -17.82 -0.10 0.60 16 22 N -0.90 -26.19 13.56 55.43 0.75 -25.44 16 23 Si 1.07 24.63 29.91 -169.99 -5.08 19.55 16 24 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.03 0.35 7.73 38.05 0.29 0.64 16 28 O -0.30 -4.02 11.10 -20.17 -0.22 -4.24 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.41 5.93 8.87 -34.47 -0.31 5.63 16 36 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.05 0.62 7.18 -51.93 -0.37 0.25 16 38 H 0.07 1.08 6.32 -51.93 -0.33 0.76 16 39 H 0.02 0.37 6.56 -51.93 -0.34 0.03 16 40 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16 41 H 0.05 0.84 6.43 -51.93 -0.33 0.51 16 42 H 0.27 7.80 6.55 -40.82 -0.27 7.53 16 43 H 0.12 1.57 6.40 -51.93 -0.33 1.24 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -33.77 369.27 -9.76 -43.52 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.91 Total: 5.28 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -1.91 Total: -15.47 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.36 Total: -62.12 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -2.13 Total: -49.45 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.55 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.65 Total: 53.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.77 -9.76 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374577507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.005 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds