Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 120.11567 * 2 1 4 4 C 1.37932 * 120.34801 * 179.78779 * 3 2 1 5 5 C 1.39282 * 120.24551 * 0.03898 * 4 3 2 6 6 C 1.38887 * 118.87274 * 0.28713 * 5 4 3 7 7 C 1.37740 * 120.78632 * 359.52560 * 6 5 4 8 8 C 1.51644 * 107.04129 * 179.48720 * 6 5 4 9 9 H 1.09006 * 110.93836 * 226.42176 * 8 6 5 10 10 N 1.46497 * 110.93600 * 102.77375 * 8 6 5 11 11 S 1.65599 * 119.99802 * 144.99872 * 10 8 6 12 12 O 1.42101 * 106.40362 * 311.45822 * 11 10 8 13 13 O 1.42104 * 106.40245 * 178.54279 * 11 10 8 14 14 N 1.65597 * 107.22076 * 64.99924 * 11 10 8 15 15 C 1.46496 * 119.99932 * 270.00261 * 14 11 10 16 16 C 1.46502 * 119.99841 * 89.99898 * 14 11 10 17 17 H 1.09001 * 109.47315 * 359.97438 * 16 14 11 18 18 C 1.53002 * 109.46961 * 240.00192 * 16 14 11 19 19 C 1.50696 * 109.47100 * 120.00588 * 16 14 11 20 20 H 1.07997 * 120.00298 * 29.57956 * 19 16 14 21 21 C 1.37882 * 119.99753 * 209.58574 * 19 16 14 22 22 N 1.31514 * 119.99972 * 353.18627 * 21 19 16 23 23 Si 1.86800 * 119.99976 * 173.18811 * 21 19 16 24 24 H 1.48498 * 109.47353 * 59.99893 * 23 21 19 25 25 H 1.48502 * 109.47043 * 299.99765 * 23 21 19 26 26 H 1.48494 * 109.47159 * 180.02562 * 23 21 19 27 27 C 1.54701 * 101.92459 * 344.61561 * 8 6 5 28 28 O 1.36134 * 129.89224 * 180.96364 * 5 4 3 29 29 H 1.09005 * 109.47048 * 270.02458 * 1 2 3 30 30 H 1.09004 * 109.47532 * 30.02316 * 1 2 3 31 31 H 1.09002 * 109.47090 * 150.02304 * 1 2 3 32 32 H 1.07999 * 119.82599 * 359.80419 * 3 2 1 33 33 H 1.07998 * 119.87699 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.01438 * 180.31295 * 7 6 5 35 35 H 0.97000 * 120.00440 * 325.00232 * 10 8 6 36 36 H 1.09002 * 109.46838 * 269.99157 * 15 14 11 37 37 H 1.08995 * 109.47406 * 29.99664 * 15 14 11 38 38 H 1.09003 * 109.46972 * 149.99877 * 15 14 11 39 39 H 1.08998 * 109.47121 * 66.36896 * 18 16 14 40 40 H 1.09000 * 109.47468 * 186.36800 * 18 16 14 41 41 H 1.08997 * 109.47315 * 306.37155 * 18 16 14 42 42 H 0.96998 * 119.99721 * 354.90721 * 22 21 19 43 43 H 1.09006 * 110.74576 * 143.60869 * 27 8 6 44 44 H 1.09001 * 110.75378 * 266.95711 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.1962 0.0000 4 6 3.5801 1.2018 0.0044 5 6 4.2866 0.0015 0.0081 6 6 3.5786 -1.1934 0.0011 7 6 2.2012 -1.1967 0.0006 8 6 4.5994 -2.3148 -0.0057 9 1 4.3425 -3.0709 -0.7477 10 7 4.7283 -2.9134 1.3251 11 16 5.0150 -4.5372 1.4783 12 8 4.0768 -5.1916 0.6353 13 8 5.1209 -4.7963 2.8716 14 7 6.5106 -4.8340 0.8325 15 6 6.6422 -5.1660 -0.5883 16 6 7.7022 -4.7646 1.6819 17 1 7.4086 -4.5062 2.6994 18 6 8.6538 -3.6964 1.1394 19 6 8.3967 -6.1020 1.6833 20 1 8.3285 -6.7469 0.8197 21 6 9.1193 -6.5024 2.7873 22 7 9.3150 -5.6666 3.7836 23 14 9.8202 -8.2321 2.8677 24 1 10.7544 -8.4409 1.7324 25 1 8.7135 -9.2189 2.7860 26 1 10.5493 -8.4117 4.1488 27 6 5.8937 -1.5664 -0.4031 28 8 5.6294 -0.2213 0.0302 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6599 2.1310 -0.0032 33 1 4.1143 2.1405 0.0048 34 1 1.6632 -2.1332 0.0002 35 1 4.6457 -2.3587 2.1166 36 1 6.5735 -6.2462 -0.7169 37 1 5.8436 -4.6816 -1.1501 38 1 7.6076 -4.8171 -0.9550 39 1 8.1939 -2.7137 1.2432 40 1 9.5873 -3.7219 1.7015 41 1 8.8581 -3.8926 0.0868 42 1 9.0155 -4.7469 3.7110 43 1 6.7551 -1.9791 0.1222 44 1 6.0447 -1.6019 -1.4820 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374577507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -105.872462 kcal Electronic energy + Delta-G solvation = -28708.954574 eV Core-core repulsion = 24752.488022 eV Total energy + Delta-G solvation = -3956.466551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.27267 -38.81674 -38.48546 -38.12933 -37.02217 -36.24675 -34.66925 -32.86790 -32.04927 -30.99303 -29.56706 -27.50473 -27.28585 -26.77097 -24.35667 -22.94354 -22.81772 -22.05090 -20.65479 -19.32517 -18.82482 -18.67608 -18.41179 -17.53019 -17.36322 -16.90931 -16.22152 -15.93562 -15.65009 -15.42385 -15.24282 -14.94174 -14.82195 -14.64371 -14.56525 -14.08106 -13.75057 -13.69564 -13.65980 -13.38062 -13.29611 -13.26119 -13.23080 -12.94953 -12.86227 -12.75324 -12.57398 -12.52152 -12.29927 -12.04585 -11.92101 -11.84600 -11.79688 -10.91565 -10.75939 -10.54880 -10.00749 -9.66276 -9.06111 -8.59832 -6.32740 -0.54503 0.24025 0.34491 1.53892 1.61122 1.79638 1.87676 2.22397 2.46394 2.58493 2.70621 3.15882 3.21644 3.30695 3.41615 3.73566 3.91315 4.00558 4.03350 4.12432 4.33832 4.37627 4.42472 4.48032 4.55181 4.65802 4.71961 4.74944 4.78838 4.83853 4.88130 4.96881 5.06095 5.07248 5.13884 5.31220 5.33516 5.36879 5.51477 5.59822 5.66098 5.71665 5.93493 6.06030 6.15603 6.28139 6.60940 7.45173 8.78142 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022684 B = 0.003320 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.050056 B = 8430.892472 C = 8941.936140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.145 4.145 5 C 0.092 3.908 6 C -0.194 4.194 7 C -0.068 4.068 8 C 0.161 3.839 9 H 0.125 0.875 10 N -1.107 6.107 11 S 2.791 3.209 12 O -1.004 7.004 13 O -1.018 7.018 14 N -0.989 5.989 15 C 0.096 3.904 16 C 0.252 3.748 17 H 0.026 0.974 18 C -0.135 4.135 19 C -0.606 4.606 20 H 0.059 0.941 21 C -0.028 4.028 22 N -0.932 5.932 23 Si 1.106 2.894 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.287 1.287 27 C 0.030 3.970 28 O -0.314 6.314 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.419 0.581 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.261 0.739 43 H 0.114 0.886 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 14.672 -13.067 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.164 4.164 5 C 0.046 3.954 6 C -0.196 4.196 7 C -0.087 4.087 8 C 0.054 3.946 9 H 0.143 0.857 10 N -0.866 5.866 11 S 2.801 3.199 12 O -0.987 6.987 13 O -1.002 7.002 14 N -0.832 5.832 15 C -0.050 4.050 16 C 0.148 3.852 17 H 0.044 0.956 18 C -0.195 4.195 19 C -0.646 4.646 20 H 0.077 0.923 21 C -0.228 4.228 22 N -0.569 5.569 23 Si 0.928 3.072 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.213 1.213 27 C -0.047 4.047 28 O -0.228 6.228 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.253 0.747 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.132 0.868 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.195 12.977 -11.827 21.963 hybrid contribution -0.342 1.121 -0.296 1.208 sum -13.537 14.098 -12.123 22.999 Atomic orbital electron populations 1.20772 0.88757 1.03885 1.03015 1.20151 0.97720 0.92161 1.02184 1.21168 0.92275 0.99027 0.96558 1.20573 0.94219 0.95586 1.05972 1.19901 0.83221 0.95181 0.97117 1.20753 0.95021 0.93733 1.10138 1.20492 0.91545 0.99202 0.97461 1.20976 0.93423 0.95787 0.84433 0.85714 1.56008 1.88535 1.28562 1.13534 1.01469 0.73087 0.73372 0.71992 1.93518 1.61763 1.73900 1.69478 1.93568 1.87293 1.84445 1.34871 1.57663 1.22939 1.83770 1.18802 1.21481 1.03676 1.00778 0.79016 1.18647 0.82372 0.95530 0.88666 0.95576 1.22071 0.98957 0.96865 1.01584 1.22449 1.33541 1.04341 1.04238 0.92285 1.27113 0.95604 1.08019 0.92042 1.70891 1.45621 1.06341 1.34038 0.83082 0.76374 0.70965 0.76729 1.18667 1.20663 1.21271 1.24660 0.98322 0.79033 1.02638 1.86838 1.20283 1.33045 1.82596 0.90717 0.89657 0.91237 0.82008 0.83870 0.85380 0.74663 0.93892 0.89985 0.89441 0.93483 0.94504 0.91349 0.92897 0.86837 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.02 71.24 0.71 -0.48 16 2 C -0.12 -2.05 5.89 -19.83 -0.12 -2.17 16 3 C -0.07 -1.10 9.68 22.21 0.21 -0.88 16 4 C -0.14 -2.74 10.06 22.45 0.23 -2.51 16 5 C 0.09 2.18 7.04 22.68 0.16 2.34 16 6 C -0.19 -4.60 5.88 -19.53 -0.11 -4.72 16 7 C -0.07 -1.45 9.70 22.18 0.22 -1.23 16 8 C 0.16 3.97 3.81 45.13 0.17 4.14 16 9 H 0.13 2.80 6.99 -2.38 -0.02 2.78 16 10 N -1.11 -32.98 5.62 -168.82 -0.95 -33.93 16 11 S 2.79 108.65 6.07 -56.49 -0.34 108.31 16 12 O -1.00 -40.33 16.61 -128.00 -2.13 -42.45 16 13 O -1.02 -50.09 16.70 -128.00 -2.14 -52.22 16 14 N -0.99 -38.50 3.12 -520.46 -1.62 -40.12 16 15 C 0.10 2.95 9.37 127.77 1.20 4.15 16 16 C 0.25 11.82 2.27 44.24 0.10 11.92 16 17 H 0.03 1.43 5.69 -2.39 -0.01 1.42 16 18 C -0.14 -5.33 9.07 71.98 0.65 -4.68 16 19 C -0.61 -32.23 8.28 25.60 0.21 -32.02 16 20 H 0.06 3.05 7.38 -2.91 -0.02 3.03 16 21 C -0.03 -1.56 5.45 84.66 0.46 -1.10 16 22 N -0.93 -56.20 13.56 21.45 0.29 -55.91 16 23 Si 1.11 49.95 29.91 68.60 2.05 52.00 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 27 C 0.03 0.67 7.73 72.56 0.56 1.23 16 28 O -0.31 -8.07 11.10 -95.07 -1.06 -9.13 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 0.63 8.09 -2.38 -0.02 0.61 16 31 H 0.07 0.74 8.09 -2.39 -0.02 0.73 16 32 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.42 12.07 8.87 -96.75 -0.86 11.21 16 36 H 0.04 1.41 8.12 -2.39 -0.02 1.39 16 37 H 0.08 1.94 7.18 -2.39 -0.02 1.93 16 38 H 0.09 2.42 6.32 -2.39 -0.02 2.40 16 39 H 0.05 1.59 6.56 -2.39 -0.02 1.57 16 40 H 0.04 1.61 7.90 -2.39 -0.02 1.59 16 41 H 0.07 2.35 6.43 -2.39 -0.02 2.34 16 42 H 0.26 15.71 6.55 -92.71 -0.61 15.11 16 43 H 0.11 2.72 6.40 -2.38 -0.02 2.71 16 44 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.94 369.27 -0.90 -75.84 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.34 Total: 23.63 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.65 Total: -26.03 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -2.28 Total: -129.96 kcal Atomic # 8 Polarization: -98.48 SS G_CDS: -5.32 Total: -103.80 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.00 kcal Atomic # 16 Polarization: 108.65 SS G_CDS: -0.34 Total: 108.31 kcal Total: -74.94 -0.90 -75.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374577507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.030 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds