Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38291 * 120.11656 * 2 1 4 4 C 1.37924 * 120.34894 * 179.82006 * 3 2 1 5 5 C 1.39293 * 120.24510 * 0.02562 * 4 3 2 6 6 C 1.38883 * 118.87158 * 0.29276 * 5 4 3 7 7 C 1.37736 * 120.78572 * 359.54748 * 6 5 4 8 8 C 1.51644 * 107.02839 * 179.52503 * 6 5 4 9 9 H 1.09001 * 110.94538 * 102.48434 * 8 6 5 10 10 N 1.46505 * 110.97113 * 226.16251 * 8 6 5 11 11 S 1.65603 * 119.99780 * 208.99284 * 10 8 6 12 12 O 1.42100 * 106.40171 * 178.53584 * 11 10 8 13 13 O 1.42103 * 106.40142 * 311.45805 * 11 10 8 14 14 N 1.65600 * 107.21742 * 64.99895 * 11 10 8 15 15 C 1.46502 * 119.99903 * 90.00301 * 14 11 10 16 16 C 1.46500 * 120.00094 * 270.00052 * 14 11 10 17 17 H 1.09005 * 109.46756 * 359.97438 * 16 14 11 18 18 C 1.53001 * 109.47077 * 240.00260 * 16 14 11 19 19 C 1.50701 * 109.47281 * 119.99942 * 16 14 11 20 20 H 1.07999 * 119.99595 * 34.80240 * 19 16 14 21 21 C 1.37879 * 119.99703 * 214.80139 * 19 16 14 22 22 N 1.31517 * 119.99321 * 184.82059 * 21 19 16 23 23 Si 1.86794 * 120.00418 * 4.81758 * 21 19 16 24 24 H 1.48504 * 109.46872 * 84.78365 * 23 21 19 25 25 H 1.48498 * 109.47418 * 204.77997 * 23 21 19 26 26 H 1.48500 * 109.47041 * 324.78453 * 23 21 19 27 27 C 1.54712 * 101.90703 * 344.32503 * 8 6 5 28 28 O 1.36376 * 129.78751 * 180.31392 * 5 4 3 29 29 H 1.09004 * 109.46698 * 90.00181 * 1 2 3 30 30 H 1.08997 * 109.47293 * 209.99770 * 1 2 3 31 31 H 1.08997 * 109.47193 * 330.00525 * 1 2 3 32 32 H 1.07996 * 119.82111 * 359.79858 * 3 2 1 33 33 H 1.07999 * 119.88039 * 179.97438 * 4 3 2 34 34 H 1.08006 * 120.00784 * 180.32287 * 7 6 5 35 35 H 0.96995 * 120.00116 * 28.99124 * 10 8 6 36 36 H 1.08999 * 109.47134 * 89.99904 * 15 14 11 37 37 H 1.09005 * 109.46845 * 210.00054 * 15 14 11 38 38 H 1.09000 * 109.46797 * 329.99505 * 15 14 11 39 39 H 1.08998 * 109.47124 * 294.96668 * 18 16 14 40 40 H 1.08996 * 109.47440 * 54.96431 * 18 16 14 41 41 H 1.09001 * 109.47053 * 174.96672 * 18 16 14 42 42 H 0.97004 * 119.99873 * 180.02562 * 22 21 19 43 43 H 1.09006 * 110.74214 * 143.68419 * 27 8 6 44 44 H 1.09001 * 110.75100 * 266.84749 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.1962 0.0000 4 6 3.5801 1.2018 0.0037 5 6 4.2866 0.0014 0.0070 6 6 3.5786 -1.1934 0.0002 7 6 2.2012 -1.1967 -0.0002 8 6 4.5996 -2.3146 -0.0062 9 1 4.6993 -2.7565 0.9852 10 7 4.2521 -3.3346 -0.9987 11 16 4.7035 -4.9100 -0.7600 12 8 4.1952 -5.6449 -1.8649 13 8 6.0808 -4.8842 -0.4112 14 7 3.8926 -5.4551 0.5769 15 6 2.5768 -6.0824 0.4303 16 6 4.4909 -5.3101 1.9063 17 1 5.4630 -4.8252 1.8162 18 6 4.6674 -6.6917 2.5395 19 6 3.5889 -4.4711 2.7744 20 1 2.5167 -4.5407 2.6649 21 6 4.1326 -3.6148 3.7083 22 7 3.3469 -2.9537 4.5301 23 14 5.9848 -3.3936 3.8064 24 1 6.4139 -2.3696 2.8203 25 1 6.3588 -2.9514 5.1738 26 1 6.6541 -4.6841 3.5031 27 6 5.8922 -1.5670 -0.4109 28 8 5.6324 -0.2193 0.0167 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6599 2.1309 -0.0033 33 1 4.1143 2.1404 0.0033 34 1 1.6633 -2.1333 -0.0003 35 1 3.7576 -3.0873 -1.7956 36 1 2.6998 -7.1565 0.2920 37 1 1.9840 -5.8969 1.3261 38 1 2.0676 -5.6603 -0.4361 39 1 3.6890 -7.1402 2.7116 40 1 5.2457 -7.3275 1.8692 41 1 5.1933 -6.5916 3.4890 42 1 3.7293 -2.3509 5.1870 43 1 6.7558 -1.9783 0.1117 44 1 6.0402 -1.6080 -1.4901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374577511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -77.324507 kcal Electronic energy + Delta-G solvation = -29673.163999 eV Core-core repulsion = 25717.935380 eV Total energy + Delta-G solvation = -3955.228619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97451 -37.61671 -36.89476 -36.39609 -35.43497 -35.03506 -32.58326 -31.78866 -30.70332 -30.00962 -28.23590 -26.45596 -25.78887 -25.26211 -23.17798 -21.63222 -20.89502 -20.74293 -19.09224 -17.57952 -17.56805 -16.98010 -16.73193 -16.60463 -15.94828 -15.43506 -15.11439 -14.48449 -14.10840 -13.93886 -13.70786 -13.56872 -13.43695 -13.29587 -12.97987 -12.77200 -12.60200 -12.54206 -12.04887 -12.02581 -11.99785 -11.86530 -11.78737 -11.68257 -11.53783 -11.39890 -11.19740 -10.88132 -10.76914 -10.69938 -10.51548 -10.43520 -9.91366 -9.60340 -9.37134 -8.74143 -8.70148 -8.16457 -7.83537 -6.29920 -4.31056 1.01720 1.46649 1.55659 3.13103 3.23655 3.25997 3.30734 3.48876 3.83635 3.98641 4.21801 4.53662 4.67415 4.79207 5.02720 5.03979 5.08904 5.22277 5.31079 5.44560 5.48077 5.54622 5.64678 5.70798 5.75900 5.82817 6.00905 6.03471 6.08549 6.13183 6.24680 6.31486 6.39785 6.42438 6.51897 6.58908 6.61465 6.73794 6.78946 6.87131 7.09975 7.12867 7.34133 7.36362 7.57730 8.30708 8.75580 9.30376 10.81389 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.006123 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.712174 B = 4571.986535 C = 5230.199234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.084 4.084 4 C -0.140 4.140 5 C 0.104 3.896 6 C -0.160 4.160 7 C -0.044 4.044 8 C 0.168 3.832 9 H 0.131 0.869 10 N -1.114 6.114 11 S 2.772 3.228 12 O -0.992 6.992 13 O -0.983 6.983 14 N -0.985 5.985 15 C 0.106 3.894 16 C 0.230 3.770 17 H 0.054 0.946 18 C -0.143 4.143 19 C -0.523 4.523 20 H 0.085 0.915 21 C 0.084 3.916 22 N -0.878 5.878 23 Si 0.843 3.157 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.257 1.257 27 C 0.035 3.965 28 O -0.302 6.302 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.412 0.588 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.054 0.946 42 H 0.268 0.732 43 H 0.114 0.886 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 4.638 -9.454 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.159 4.159 5 C 0.058 3.942 6 C -0.163 4.163 7 C -0.062 4.062 8 C 0.060 3.940 9 H 0.149 0.851 10 N -0.871 5.871 11 S 2.781 3.219 12 O -0.976 6.976 13 O -0.967 6.967 14 N -0.828 5.828 15 C -0.040 4.040 16 C 0.127 3.873 17 H 0.072 0.928 18 C -0.203 4.203 19 C -0.563 4.563 20 H 0.103 0.897 21 C -0.122 4.122 22 N -0.515 5.515 23 Si 0.669 3.331 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.181 1.181 27 C -0.042 4.042 28 O -0.215 6.215 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.245 0.755 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.909 4.346 -9.631 10.737 hybrid contribution 0.515 0.409 0.220 0.694 sum -1.394 4.755 -9.411 10.636 Atomic orbital electron populations 1.20679 0.90888 1.02916 1.01789 1.19755 0.96151 0.92624 1.03434 1.20686 0.92662 0.97740 0.99167 1.20138 0.93452 0.95270 1.07020 1.19600 0.83298 0.94496 0.96793 1.20635 0.94723 0.93715 1.07203 1.20186 0.91657 0.98128 0.96234 1.20951 0.90999 0.88147 0.93888 0.85117 1.56050 1.73529 1.26276 1.31283 1.02238 0.74040 0.72630 0.72947 1.93564 1.81475 1.69783 1.52828 1.93577 1.32269 1.86554 1.84259 1.57905 1.30177 1.72745 1.21929 1.21217 0.84222 0.96352 1.02206 1.19165 0.94054 0.94789 0.79322 0.92805 1.22153 1.00640 0.97765 0.99711 1.21167 0.95161 1.22290 1.17707 0.89725 1.24932 0.97214 0.94946 0.95084 1.69854 1.35122 1.27088 1.19391 0.87384 0.87056 0.80091 0.78580 1.19051 1.20671 1.18123 1.24432 0.99290 0.79369 1.01082 1.86902 1.19792 1.32078 1.82722 0.91671 0.91332 0.91748 0.85478 0.85676 0.85421 0.75495 0.93760 0.89946 0.92836 0.92759 0.95329 0.92675 0.92210 0.86811 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.02 36.00 0.36 -0.78 16 2 C -0.12 -1.65 5.89 -104.56 -0.62 -2.26 16 3 C -0.08 -1.10 9.68 -39.68 -0.38 -1.48 16 4 C -0.14 -2.03 10.06 -39.30 -0.40 -2.43 16 5 C 0.10 1.77 7.04 -38.95 -0.27 1.50 16 6 C -0.16 -2.77 5.85 -104.10 -0.61 -3.38 16 7 C -0.04 -0.69 9.70 -39.72 -0.39 -1.08 16 8 C 0.17 3.02 3.67 -67.71 -0.25 2.77 16 9 H 0.13 2.75 5.90 -51.93 -0.31 2.44 16 10 N -1.11 -17.83 5.66 -4.71 -0.03 -17.85 16 11 S 2.77 51.43 6.04 -107.50 -0.65 50.78 16 12 O -0.99 -19.23 17.21 -57.17 -0.98 -20.21 16 13 O -0.98 -20.61 16.46 -57.17 -0.94 -21.55 16 14 N -0.98 -18.87 3.12 -115.85 -0.36 -19.23 16 15 C 0.11 1.75 9.44 59.85 0.56 2.31 16 16 C 0.23 5.02 1.63 -69.08 -0.11 4.90 16 17 H 0.05 1.25 3.98 -51.93 -0.21 1.04 16 18 C -0.14 -2.87 9.10 37.16 0.34 -2.53 16 19 C -0.52 -12.79 8.02 -34.44 -0.28 -13.06 16 20 H 0.08 2.21 6.82 -52.49 -0.36 1.85 16 21 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 22 N -0.88 -24.36 13.96 55.43 0.77 -23.59 16 23 Si 0.84 19.93 26.35 -169.99 -4.48 15.45 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.26 -5.90 6.83 56.52 0.39 -5.52 16 27 C 0.04 0.59 7.72 38.06 0.29 0.88 16 28 O -0.30 -5.35 11.12 -20.95 -0.23 -5.58 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 35 H 0.41 5.46 8.82 -34.47 -0.30 5.16 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.39 6.56 -51.93 -0.34 1.05 16 38 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 39 H 0.05 1.02 7.84 -51.93 -0.41 0.62 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.11 1.88 8.14 -51.93 -0.42 1.46 16 44 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -30.29 369.42 -9.29 -39.59 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.12 Total: 9.20 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.84 Total: -12.57 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.39 Total: -60.67 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -2.16 Total: -47.35 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.48 Total: 15.45 kcal Atomic # 16 Polarization: 51.43 SS G_CDS: -0.65 Total: 50.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.29 -9.29 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374577511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.736 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds