Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00234 * 2 1 4 4 H 1.48499 * 109.47119 * 269.99712 * 3 2 1 5 5 H 1.48504 * 109.47006 * 29.99921 * 3 2 1 6 6 H 1.48498 * 109.46952 * 149.99459 * 3 2 1 7 7 C 1.37884 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99761 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99991 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.46770 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99858 * 185.76436 * 10 9 7 12 12 C 1.50693 * 109.47134 * 174.12414 * 11 10 9 13 13 C 1.38254 * 120.00342 * 260.28512 * 12 11 10 14 14 C 1.38216 * 119.99924 * 180.02562 * 13 12 11 15 15 C 1.38260 * 120.00240 * 359.97438 * 14 13 12 16 16 C 1.38212 * 119.99836 * 359.80727 * 15 14 13 17 17 C 1.38212 * 119.99762 * 80.30983 * 12 11 10 18 18 S 1.76199 * 120.00169 * 359.97438 * 17 12 11 19 19 O 1.42100 * 106.40209 * 52.59871 * 18 17 12 20 20 O 1.42110 * 106.40121 * 279.68110 * 18 17 12 21 21 N 1.65594 * 107.22194 * 166.14192 * 18 17 12 22 22 C 1.47172 * 120.94326 * 272.21733 * 21 18 17 23 23 C 1.53299 * 108.37492 * 230.51363 * 22 21 18 24 24 O 1.42963 * 109.26453 * 307.77330 * 23 22 21 25 25 C 1.42965 * 114.16691 * 62.55558 * 24 23 22 26 26 C 1.47158 * 120.98384 * 92.27866 * 21 18 17 27 27 H 0.96998 * 119.99909 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46818 * 60.00085 * 9 7 2 29 29 H 1.08995 * 109.46736 * 300.00013 * 9 7 2 30 30 H 1.00905 * 110.99817 * 61.82118 * 10 9 7 31 31 H 1.09007 * 109.46738 * 54.13051 * 11 10 9 32 32 H 1.09001 * 109.47186 * 294.12902 * 11 10 9 33 33 H 1.07994 * 119.99814 * 359.97438 * 13 12 11 34 34 H 1.08002 * 120.00235 * 179.97438 * 14 13 12 35 35 H 1.07997 * 119.99921 * 179.97438 * 15 14 13 36 36 H 1.07998 * 120.00108 * 180.23549 * 16 15 14 37 37 H 1.08999 * 109.64659 * 110.81849 * 22 21 18 38 38 H 1.08999 * 109.72468 * 350.25286 * 22 21 18 39 39 H 1.08993 * 109.51493 * 187.82187 * 23 22 21 40 40 H 1.08999 * 109.51056 * 67.72143 * 23 22 21 41 41 H 1.08998 * 109.51051 * 57.34450 * 25 24 23 42 42 H 1.09005 * 109.51029 * 177.44263 * 25 24 23 43 43 H 1.08999 * 109.67859 * 9.71721 * 26 21 18 44 44 H 1.08994 * 109.68140 * 249.15833 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0022 11 6 5.4630 -2.6206 0.1406 12 6 5.9137 -4.0515 0.2827 13 6 6.2038 -4.5640 1.5335 14 6 6.6177 -5.8763 1.6637 15 6 6.7412 -6.6767 0.5431 16 6 6.4468 -6.1657 -0.7069 17 6 6.0376 -4.8514 -0.8376 18 16 5.6679 -4.1984 -2.4318 19 8 6.4282 -3.0050 -2.5627 20 8 4.2535 -4.2371 -2.5632 21 7 6.2706 -5.2617 -3.5491 22 6 7.6596 -5.1546 -4.0234 23 6 7.6496 -5.1723 -5.5562 24 8 6.9086 -6.3076 -6.0100 25 6 5.5313 -6.2988 -5.6266 26 6 5.4328 -6.3401 -4.0974 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8751 -0.6805 -0.8888 30 1 3.7025 -3.0689 -0.8279 31 1 5.7604 -2.0565 1.0247 32 1 5.9243 -2.1804 -0.7435 33 1 6.1078 -3.9387 2.4088 34 1 6.8447 -6.2766 2.6407 35 1 7.0650 -7.7019 0.6448 36 1 6.5396 -6.7919 -1.5819 37 1 8.2404 -5.9982 -3.6503 38 1 8.0981 -4.2214 -3.6700 39 1 8.6729 -5.2339 -5.9263 40 1 7.1824 -4.2603 -5.9278 41 1 5.0559 -5.3909 -5.9977 42 1 5.0305 -7.1705 -6.0482 43 1 4.3970 -6.1915 -3.7922 44 1 5.7890 -7.3034 -3.7325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426001800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -101.388115 kcal Electronic energy + Delta-G solvation = -28517.662115 eV Core-core repulsion = 24561.390020 eV Total energy + Delta-G solvation = -3956.272095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51375 -40.23869 -38.56876 -37.65655 -36.93606 -35.96116 -34.76507 -32.72873 -32.41674 -32.31192 -29.47014 -28.16802 -26.17209 -25.26483 -24.30154 -23.23772 -22.77220 -22.46067 -20.23011 -19.30522 -19.02030 -18.50213 -17.58762 -17.32070 -16.93343 -16.86414 -16.42852 -16.27428 -16.10892 -15.99862 -15.83633 -15.66681 -15.52569 -15.00089 -14.59269 -14.52275 -13.96722 -13.85526 -13.76106 -13.55772 -13.49192 -13.29001 -13.25050 -13.07678 -12.77177 -12.73341 -12.59792 -12.35753 -12.12456 -11.85753 -11.77598 -11.58343 -11.48877 -11.36262 -10.87296 -10.39599 -9.99603 -9.97110 -9.39259 -8.35071 -6.40757 -0.90646 -0.23248 0.25006 1.29736 1.32200 1.43649 1.62519 2.29542 2.42107 2.45199 2.86469 2.97002 3.14985 3.39818 3.46275 3.63919 3.71833 3.79605 3.93035 4.12441 4.17604 4.19728 4.20411 4.23736 4.38410 4.39216 4.44936 4.61300 4.62582 4.64056 4.70869 4.75856 4.85306 4.89173 4.92233 5.00095 5.07221 5.29575 5.34913 5.36625 5.40748 5.75228 5.86152 6.09631 6.29922 6.44911 6.64301 7.22638 8.82032 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.003977 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.932680 B = 7039.432710 C = 8455.289062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.034 0.966 9 C 0.169 3.831 10 N -0.689 5.689 11 C 0.032 3.968 12 C 0.002 3.998 13 C -0.132 4.132 14 C -0.061 4.061 15 C -0.134 4.134 16 C -0.034 4.034 17 C -0.680 4.680 18 S 2.682 3.318 19 O -0.984 6.984 20 O -0.983 6.983 21 N -0.995 5.995 22 C 0.074 3.926 23 C 0.047 3.953 24 O -0.384 6.384 25 C 0.047 3.953 26 C 0.070 3.930 27 H 0.271 0.729 28 H 0.042 0.958 29 H -0.019 1.019 30 H 0.337 0.663 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.136 0.864 43 H 0.097 0.903 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.022 -18.904 -6.579 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.572 4.572 8 H 0.053 0.947 9 C 0.041 3.959 10 N -0.323 5.323 11 C -0.096 4.096 12 C 0.000 4.000 13 C -0.151 4.151 14 C -0.078 4.078 15 C -0.153 4.153 16 C -0.053 4.053 17 C -0.770 4.770 18 S 2.778 3.222 19 O -0.974 6.974 20 O -0.972 6.972 21 N -0.837 5.837 22 C -0.050 4.050 23 C -0.032 4.032 24 O -0.303 6.303 25 C -0.031 4.031 26 C -0.054 4.054 27 H 0.080 0.920 28 H 0.060 0.940 29 H -0.001 1.001 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.185 0.815 35 H 0.191 0.809 36 H 0.179 0.821 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.155 0.845 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.154 0.846 43 H 0.116 0.884 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 22.378 -18.231 -6.203 29.523 hybrid contribution -0.170 1.259 -0.162 1.281 sum 22.208 -16.972 -6.365 28.666 Atomic orbital electron populations 1.70042 1.08060 1.28439 1.51735 1.25882 0.95779 1.03241 0.93779 0.85701 0.79610 0.78222 0.79396 1.19246 1.19455 1.17086 1.21237 0.90914 0.93699 1.51319 0.94741 1.19900 0.94531 0.86192 0.95306 1.60540 1.08294 1.17228 1.46189 1.21758 0.89448 0.94319 1.04110 1.19409 0.92990 0.93679 0.93971 1.21446 0.99945 0.97645 0.96092 1.21917 0.92612 0.92234 1.01062 1.21750 1.00111 1.01896 0.91495 1.21209 0.92435 0.90998 1.00636 1.30479 1.19724 1.06514 1.20277 1.02033 0.72977 0.73328 0.73912 1.93510 1.72677 1.44524 1.86674 1.93585 1.30766 1.86416 1.86480 1.57557 1.22468 1.47713 1.55978 1.22524 0.80348 1.05316 0.96800 1.23089 0.98983 0.88878 0.92225 1.87941 1.21745 1.44345 1.76227 1.23072 0.83168 1.04056 0.92806 1.22567 0.95975 0.90844 0.96029 0.92046 0.94012 1.00115 0.84337 0.87594 0.92974 0.84050 0.81465 0.80941 0.82058 0.87096 0.88333 0.84526 0.93524 0.93577 0.84609 0.88444 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.92 13.96 21.45 0.30 -61.62 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.95 46.70 27.47 68.60 1.88 48.58 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 7 C -0.53 -34.29 9.92 25.60 0.25 -34.04 16 8 H 0.03 2.46 8.06 -2.91 -0.02 2.44 16 9 C 0.17 9.26 4.51 85.56 0.39 9.64 16 10 N -0.69 -34.15 6.41 -521.99 -3.35 -37.50 16 11 C 0.03 1.29 5.21 85.55 0.45 1.74 16 12 C 0.00 0.06 5.44 -19.87 -0.11 -0.05 16 13 C -0.13 -3.42 9.67 22.27 0.22 -3.20 16 14 C -0.06 -1.08 10.05 22.27 0.22 -0.86 16 15 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 16 C -0.03 -0.67 9.57 22.27 0.21 -0.46 16 17 C -0.68 -19.74 5.83 22.27 0.13 -19.61 16 18 S 2.68 85.80 4.62 -56.49 -0.26 85.54 16 19 O -0.98 -36.35 14.39 -128.00 -1.84 -38.19 16 20 O -0.98 -39.66 14.49 -128.00 -1.85 -41.51 16 21 N -0.99 -20.60 2.40 -511.56 -1.23 -21.83 16 22 C 0.07 1.13 6.70 86.35 0.58 1.71 16 23 C 0.05 0.66 6.98 72.08 0.50 1.16 16 24 O -0.38 -6.23 10.74 -148.98 -1.60 -7.83 16 25 C 0.05 0.71 6.98 72.08 0.50 1.22 16 26 C 0.07 1.14 6.36 86.35 0.55 1.69 16 27 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 28 H 0.04 2.17 7.12 -2.39 -0.02 2.16 16 29 H -0.02 -1.03 7.57 -2.39 -0.02 -1.05 16 30 H 0.34 17.45 6.22 -89.69 -0.56 16.89 16 31 H 0.11 3.80 7.93 -2.38 -0.02 3.78 16 32 H 0.05 2.16 5.49 -2.39 -0.01 2.15 16 33 H 0.14 3.31 8.04 -2.91 -0.02 3.29 16 34 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 35 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.16 2.00 6.80 -2.91 -0.02 1.98 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.63 7.00 -2.39 -0.02 1.61 16 39 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.10 1.86 6.90 -2.39 -0.02 1.85 16 44 H 0.11 1.07 7.94 -2.39 -0.02 1.05 16 Total: -1.00 -88.28 362.17 -2.96 -91.24 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.41 Total: 24.89 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 4.58 Total: -41.78 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -4.28 Total: -120.94 kcal Atomic # 8 Polarization: -82.23 SS G_CDS: -5.30 Total: -87.53 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.88 Total: 48.58 kcal Atomic # 16 Polarization: 85.80 SS G_CDS: -0.26 Total: 85.54 kcal Total: -88.28 -2.96 -91.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426001800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.146 kcal (2) G-P(sol) polarization free energy of solvation -88.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds