Wall clock time and date at job start Sat Apr 11 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.96052 * 2 1 4 4 C 1.38252 * 120.13695 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.96260 * 180.02562 * 4 3 2 6 6 C 1.81409 * 104.45043 * 270.02179 * 5 4 3 7 7 O 1.42090 * 104.27818 * 26.09570 * 5 4 3 8 8 O 1.42100 * 104.27705 * 153.95422 * 5 4 3 9 9 C 1.38142 * 120.07341 * 0.02692 * 4 3 2 10 10 C 1.38844 * 119.92505 * 359.97438 * 9 4 3 11 11 N 1.39948 * 120.06446 * 179.97438 * 10 9 4 12 12 C 1.34771 * 120.00316 * 335.17609 * 11 10 9 13 13 O 1.21586 * 119.99847 * 354.34476 * 12 11 10 14 14 N 1.34776 * 120.00114 * 174.06223 * 12 11 10 15 15 C 1.46501 * 120.00012 * 0.28243 * 14 12 11 16 16 C 1.46503 * 120.00020 * 180.27201 * 14 12 11 17 17 C 1.50703 * 109.46660 * 90.00843 * 16 14 12 18 18 H 1.08002 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.37871 * 119.99845 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47250 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47408 * 120.00189 * 21 19 17 24 24 H 1.48506 * 109.47532 * 240.00309 * 21 19 17 25 25 C 1.38087 * 119.96743 * 180.28316 * 2 1 3 26 26 C 1.50702 * 120.03599 * 359.96684 * 25 2 1 27 27 H 1.08998 * 109.47213 * 89.99890 * 1 2 3 28 28 H 1.08998 * 109.46922 * 209.99448 * 1 2 3 29 29 H 1.08997 * 109.47485 * 329.99709 * 1 2 3 30 30 H 1.07992 * 119.92876 * 0.04678 * 3 2 1 31 31 H 1.08996 * 109.46551 * 60.00382 * 6 5 4 32 32 H 1.09000 * 109.46894 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46931 * 299.99858 * 6 5 4 34 34 H 1.07996 * 120.03684 * 179.97438 * 9 4 3 35 35 H 0.97000 * 119.99372 * 155.17875 * 11 10 9 36 36 H 1.09000 * 109.47463 * 89.99239 * 15 14 12 37 37 H 1.08997 * 109.47222 * 209.99438 * 15 14 12 38 38 H 1.09000 * 109.46730 * 329.99654 * 15 14 12 39 39 H 1.08999 * 109.46905 * 210.00245 * 16 14 12 40 40 H 1.08996 * 109.47436 * 330.00956 * 16 14 12 41 41 H 0.96996 * 120.00788 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47343 * 270.24109 * 26 25 2 43 43 H 1.09001 * 109.46816 * 30.23999 * 26 25 2 44 44 H 1.09005 * 109.46508 * 150.23685 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5803 1.2025 -0.0005 5 16 4.4556 2.7317 0.0002 6 6 4.6792 3.1261 -1.7564 7 8 3.5566 3.6498 0.6068 8 8 5.7037 2.4208 0.6041 9 6 4.2762 0.0092 -0.0016 10 6 3.5856 -1.1953 -0.0017 11 7 4.2877 -2.4060 -0.0033 12 6 5.5416 -2.4572 -0.4948 13 8 6.0252 -1.4784 -1.0299 14 7 6.2614 -3.5916 -0.3881 15 6 5.6786 -4.7710 0.2566 16 6 7.6265 -3.6455 -0.9171 17 6 8.5979 -3.2267 0.1563 18 1 8.2347 -2.9480 1.1345 19 6 9.9503 -3.1995 -0.1104 20 7 10.3926 -3.5384 -1.3017 21 14 11.1544 -2.6798 1.2198 22 1 10.4086 -2.3485 2.4605 23 1 12.1009 -3.7911 1.4924 24 1 11.9108 -1.4859 0.7639 25 6 2.1968 -1.1962 -0.0059 26 6 1.4434 -2.5014 -0.0116 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1325 0.0008 31 1 3.7043 3.2155 -2.2355 32 1 5.2189 4.0684 -1.8513 33 1 5.2491 2.3313 -2.2375 34 1 5.3562 0.0132 -0.0025 35 1 3.8718 -3.2082 0.3493 36 1 5.1700 -5.3798 -0.4910 37 1 6.4693 -5.3568 0.7254 38 1 4.9628 -4.4540 1.0150 39 1 7.8530 -4.6631 -1.2352 40 1 7.7131 -2.9707 -1.7687 41 1 11.3441 -3.5196 -1.4893 42 1 1.2585 -2.8187 1.0147 43 1 0.4926 -2.3697 -0.5281 44 1 2.0342 -3.2596 -0.5256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435082563.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:46 Heat of formation + Delta-G solvation = -60.487971 kcal Electronic energy + Delta-G solvation = -28021.768764 eV Core-core repulsion = 24067.270232 eV Total energy + Delta-G solvation = -3954.498532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65938 -38.90673 -37.01429 -35.86713 -35.27959 -34.72814 -33.59586 -32.62414 -30.73449 -29.55487 -28.04011 -27.48595 -26.70504 -25.87767 -23.42714 -21.89698 -21.61323 -19.47545 -18.88272 -18.06298 -17.16735 -16.62004 -16.20834 -16.16309 -16.03220 -15.35997 -15.18428 -14.87588 -14.68543 -14.39275 -13.97811 -13.41973 -13.31565 -13.22358 -13.19793 -13.10651 -12.91442 -12.77077 -12.41549 -12.22750 -12.14328 -12.00033 -11.97293 -11.92035 -11.90884 -11.49279 -11.22114 -11.09013 -10.89561 -10.66041 -10.60598 -10.30123 -10.14093 -9.66910 -9.33627 -8.86321 -8.44542 -8.06032 -7.66501 -6.05714 -4.10402 0.10228 0.84353 1.33943 2.89706 3.00958 3.27747 3.31712 3.40288 3.45616 3.81026 4.00356 4.15919 4.34138 4.48713 4.57069 4.72279 4.74996 4.85452 4.92129 5.10293 5.20229 5.29055 5.31433 5.39127 5.40202 5.47844 5.55905 5.61647 5.66538 5.73404 5.75058 5.83562 6.03764 6.10361 6.28665 6.37469 6.47038 6.70509 7.07613 7.27200 7.41005 7.57240 7.91391 8.19622 8.43548 8.89350 9.09272 9.55378 11.02270 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.003940 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.928015 B = 7105.102431 C = 9063.539086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.055 4.055 4 C -0.638 4.638 5 S 2.499 3.501 6 C -0.649 4.649 7 O -0.946 6.946 8 O -0.929 6.929 9 C -0.038 4.038 10 C 0.169 3.831 11 N -0.691 5.691 12 C 0.696 3.304 13 O -0.565 6.565 14 N -0.608 5.608 15 C 0.081 3.919 16 C 0.259 3.741 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.282 1.282 25 C -0.079 4.079 26 C -0.121 4.121 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.172 0.828 35 H 0.404 0.596 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.263 0.737 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.252 4.827 -0.020 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.075 4.075 4 C -0.726 4.726 5 S 2.679 3.321 6 C -0.799 4.799 7 O -0.943 6.943 8 O -0.926 6.926 9 C -0.059 4.059 10 C 0.071 3.929 11 N -0.339 5.339 12 C 0.398 3.602 13 O -0.442 6.442 14 N -0.343 5.343 15 C -0.063 4.063 16 C 0.140 3.860 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.207 1.207 25 C -0.083 4.083 26 C -0.177 4.177 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.189 0.811 35 H 0.241 0.759 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.317 5.849 0.187 21.144 hybrid contribution 0.283 -0.863 0.235 0.938 sum -20.034 4.987 0.422 20.650 Atomic orbital electron populations 1.20802 0.90616 1.03067 1.02436 1.19539 0.95986 0.91865 1.01618 1.20624 0.91812 0.98374 0.96729 1.30385 1.05498 1.18854 1.17847 1.05142 0.74728 0.74444 0.77809 1.30206 1.11951 1.12493 1.25289 1.93551 1.65179 1.62157 1.73397 1.93641 1.42446 1.83445 1.73047 1.21406 1.02695 0.89153 0.92669 1.17418 0.89885 0.85905 0.99703 1.43020 1.15581 1.10085 1.65239 1.15949 0.79800 0.84699 0.79791 1.90841 1.70158 1.34438 1.48732 1.47539 1.16926 1.09705 1.60149 1.21631 0.99142 0.89068 0.96484 1.19305 0.73470 0.98021 0.95244 1.21479 0.91215 1.45560 0.98415 0.92308 1.24911 0.98250 0.95076 0.95726 1.69933 1.14638 1.48315 1.20520 0.86437 0.80847 0.78257 0.81873 1.19723 1.21020 1.20746 1.19662 0.91513 0.95894 1.01238 1.20847 1.00365 0.93894 1.02636 0.91049 0.91226 0.91199 0.84492 0.85240 0.85174 0.84403 0.81095 0.75909 0.93538 0.89987 0.93129 0.94664 0.93537 0.92735 0.90636 0.90499 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.18 36.01 0.33 -0.51 16 2 C -0.09 -0.99 5.88 -104.65 -0.62 -1.61 16 3 C -0.06 -0.67 9.12 -39.55 -0.36 -1.03 16 4 C -0.64 -9.12 5.65 -39.61 -0.22 -9.34 16 5 S 2.50 32.75 5.80 -107.50 -0.62 32.13 16 6 C -0.65 -5.86 10.80 101.05 1.09 -4.77 16 7 O -0.95 -13.62 17.12 -57.54 -0.99 -14.60 16 8 O -0.93 -16.57 17.12 -57.54 -0.99 -17.55 16 9 C -0.04 -0.66 8.14 -39.39 -0.32 -0.98 16 10 C 0.17 2.64 6.41 -83.69 -0.54 2.11 16 11 N -0.69 -10.95 4.80 -14.23 -0.07 -11.02 16 12 C 0.70 14.46 8.08 -86.92 -0.70 13.75 16 13 O -0.57 -13.88 13.09 5.29 0.07 -13.81 16 14 N -0.61 -12.58 2.86 -188.74 -0.54 -13.12 16 15 C 0.08 1.20 10.16 59.85 0.61 1.81 16 16 C 0.26 6.62 5.16 -5.19 -0.03 6.59 16 17 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 18 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 21 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C -0.08 -0.97 5.90 -104.44 -0.62 -1.58 16 26 C -0.12 -1.02 8.62 36.01 0.31 -0.71 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 6.72 -51.93 -0.35 0.09 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.14 1.34 7.56 -52.49 -0.40 0.95 16 31 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.13 0.92 8.14 -51.92 -0.42 0.49 16 33 H 0.14 1.31 8.14 -51.92 -0.42 0.89 16 34 H 0.17 3.53 5.30 -52.49 -0.28 3.25 16 35 H 0.40 4.95 5.23 -40.82 -0.21 4.73 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 38 H 0.05 0.60 6.45 -51.93 -0.33 0.27 16 39 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.52 6.72 -51.93 -0.35 0.17 16 44 H 0.07 0.57 6.99 -51.93 -0.36 0.21 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -38.27 374.46 -9.26 -47.53 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.01 Total: 3.11 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.48 Total: -9.79 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.13 Total: -49.76 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -1.90 Total: -45.97 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 32.75 SS G_CDS: -0.62 Total: 32.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.27 -9.26 -47.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435082563.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.954 kcal (2) G-P(sol) polarization free energy of solvation -38.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds