Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.96052 * 2 1 4 4 C 1.38252 * 120.13695 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.96260 * 180.02562 * 4 3 2 6 6 C 1.81409 * 104.45043 * 270.02179 * 5 4 3 7 7 O 1.42090 * 104.27818 * 26.09570 * 5 4 3 8 8 O 1.42100 * 104.27705 * 153.95422 * 5 4 3 9 9 C 1.38142 * 120.07341 * 0.02692 * 4 3 2 10 10 C 1.38844 * 119.92505 * 359.97438 * 9 4 3 11 11 N 1.39948 * 120.06446 * 179.97438 * 10 9 4 12 12 C 1.34771 * 120.00316 * 335.17609 * 11 10 9 13 13 O 1.21586 * 119.99847 * 354.34476 * 12 11 10 14 14 N 1.34776 * 120.00114 * 174.06223 * 12 11 10 15 15 C 1.46501 * 120.00012 * 0.28243 * 14 12 11 16 16 C 1.46503 * 120.00020 * 180.27201 * 14 12 11 17 17 C 1.50703 * 109.46660 * 90.00843 * 16 14 12 18 18 H 1.08002 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.37871 * 119.99845 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00315 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47250 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47408 * 120.00189 * 21 19 17 24 24 H 1.48506 * 109.47532 * 240.00309 * 21 19 17 25 25 C 1.38087 * 119.96743 * 180.28316 * 2 1 3 26 26 C 1.50702 * 120.03599 * 359.96684 * 25 2 1 27 27 H 1.08998 * 109.47213 * 89.99890 * 1 2 3 28 28 H 1.08998 * 109.46922 * 209.99448 * 1 2 3 29 29 H 1.08997 * 109.47485 * 329.99709 * 1 2 3 30 30 H 1.07992 * 119.92876 * 0.04678 * 3 2 1 31 31 H 1.08996 * 109.46551 * 60.00382 * 6 5 4 32 32 H 1.09000 * 109.46894 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46931 * 299.99858 * 6 5 4 34 34 H 1.07996 * 120.03684 * 179.97438 * 9 4 3 35 35 H 0.97000 * 119.99372 * 155.17875 * 11 10 9 36 36 H 1.09000 * 109.47463 * 89.99239 * 15 14 12 37 37 H 1.08997 * 109.47222 * 209.99438 * 15 14 12 38 38 H 1.09000 * 109.46730 * 329.99654 * 15 14 12 39 39 H 1.08999 * 109.46905 * 210.00245 * 16 14 12 40 40 H 1.08996 * 109.47436 * 330.00956 * 16 14 12 41 41 H 0.96996 * 120.00788 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47343 * 270.24109 * 26 25 2 43 43 H 1.09001 * 109.46816 * 30.23999 * 26 25 2 44 44 H 1.09005 * 109.46508 * 150.23685 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5803 1.2025 -0.0005 5 16 4.4556 2.7317 0.0002 6 6 4.6792 3.1261 -1.7564 7 8 3.5566 3.6498 0.6068 8 8 5.7037 2.4208 0.6041 9 6 4.2762 0.0092 -0.0016 10 6 3.5856 -1.1953 -0.0017 11 7 4.2877 -2.4060 -0.0033 12 6 5.5416 -2.4572 -0.4948 13 8 6.0252 -1.4784 -1.0299 14 7 6.2614 -3.5916 -0.3881 15 6 5.6786 -4.7710 0.2566 16 6 7.6265 -3.6455 -0.9171 17 6 8.5979 -3.2267 0.1563 18 1 8.2347 -2.9480 1.1345 19 6 9.9503 -3.1995 -0.1104 20 7 10.3926 -3.5384 -1.3017 21 14 11.1544 -2.6798 1.2198 22 1 10.4086 -2.3485 2.4605 23 1 12.1009 -3.7911 1.4924 24 1 11.9108 -1.4859 0.7639 25 6 2.1968 -1.1962 -0.0059 26 6 1.4434 -2.5014 -0.0116 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1325 0.0008 31 1 3.7043 3.2155 -2.2355 32 1 5.2189 4.0684 -1.8513 33 1 5.2491 2.3313 -2.2375 34 1 5.3562 0.0132 -0.0025 35 1 3.8718 -3.2082 0.3493 36 1 5.1700 -5.3798 -0.4910 37 1 6.4693 -5.3568 0.7254 38 1 4.9628 -4.4540 1.0150 39 1 7.8530 -4.6631 -1.2352 40 1 7.7131 -2.9707 -1.7687 41 1 11.3441 -3.5196 -1.4893 42 1 1.2585 -2.8187 1.0147 43 1 0.4926 -2.3697 -0.5281 44 1 2.0342 -3.2596 -0.5256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435082563.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -89.027609 kcal Electronic energy + Delta-G solvation = -28023.006336 eV Core-core repulsion = 24067.270232 eV Total energy + Delta-G solvation = -3955.736104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96000 -40.18061 -38.17113 -37.03543 -36.86530 -36.15629 -34.70966 -34.52745 -31.83939 -30.37280 -29.71318 -28.55376 -27.53599 -27.39182 -25.25617 -22.96934 -22.88355 -20.88194 -20.03927 -19.32130 -18.73669 -18.42499 -17.53663 -17.24823 -17.16678 -16.68139 -16.60463 -16.21733 -16.12046 -15.54950 -15.31082 -14.82440 -14.51940 -14.23714 -14.09280 -14.02227 -13.91483 -13.69374 -13.60422 -13.47744 -13.33283 -13.19800 -13.16815 -13.07973 -13.01017 -12.85014 -12.72754 -12.59016 -12.39342 -12.22016 -12.14102 -11.76680 -11.67616 -11.47126 -10.96007 -10.65233 -9.80534 -9.60991 -9.03337 -8.23826 -6.37773 -0.88786 -0.19705 0.25346 1.33826 1.37973 1.47927 1.61019 1.87304 2.02022 2.36335 2.50181 2.95598 2.98124 3.06286 3.19547 3.72153 3.84557 4.03304 4.04694 4.08728 4.21817 4.30429 4.33183 4.48181 4.60383 4.64671 4.75566 4.81082 4.84092 4.88480 4.91726 4.93730 5.01242 5.13866 5.18793 5.20235 5.22085 5.42567 5.48843 5.52381 5.74963 5.94614 6.01284 6.04094 6.70466 6.95623 7.28808 7.53031 8.82782 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.003940 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.928015 B = 7105.102431 C = 9063.539086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.054 4.054 4 C -0.644 4.644 5 S 2.500 3.500 6 C -0.626 4.626 7 O -0.962 6.962 8 O -0.991 6.991 9 C -0.077 4.077 10 C 0.139 3.861 11 N -0.670 5.670 12 C 0.689 3.311 13 O -0.614 6.614 14 N -0.617 5.617 15 C 0.075 3.925 16 C 0.276 3.724 17 C -0.544 4.544 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.961 3.039 22 H -0.274 1.274 23 H -0.264 1.264 24 H -0.282 1.282 25 C -0.069 4.069 26 C -0.122 4.122 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.421 0.579 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.003 0.997 41 H 0.268 0.732 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.802 4.592 0.264 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.073 4.073 4 C -0.732 4.732 5 S 2.684 3.316 6 C -0.780 4.780 7 O -0.959 6.959 8 O -0.988 6.988 9 C -0.098 4.098 10 C 0.042 3.958 11 N -0.321 5.321 12 C 0.391 3.609 13 O -0.494 6.494 14 N -0.352 5.352 15 C -0.067 4.067 16 C 0.154 3.846 17 C -0.582 4.582 18 H 0.066 0.934 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.189 1.189 24 H -0.208 1.208 25 C -0.072 4.072 26 C -0.178 4.178 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.182 0.818 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.942 5.564 0.544 24.586 hybrid contribution 1.233 -0.716 0.077 1.428 sum -22.709 4.848 0.621 23.229 Atomic orbital electron populations 1.20935 0.87140 1.04684 1.04066 1.20104 0.98315 0.90914 0.99336 1.21082 0.90852 1.00245 0.95168 1.30359 1.06642 1.17912 1.18278 1.04885 0.73248 0.73760 0.79709 1.30023 1.14463 1.13476 1.20009 1.93514 1.64987 1.62054 1.75347 1.93567 1.44919 1.84215 1.76102 1.21094 1.00927 0.91483 0.96344 1.17687 0.91430 0.84911 1.01796 1.42602 1.13783 1.11192 1.64488 1.16158 0.81137 0.83914 0.79710 1.90817 1.71660 1.36154 1.50776 1.47387 1.15524 1.11631 1.60641 1.21943 0.99571 0.87284 0.97919 1.18736 0.76053 0.96378 0.93408 1.21725 0.92268 1.45746 0.98493 0.93410 1.25735 0.99999 0.94973 0.97898 1.70025 1.15278 1.48986 1.22114 0.85467 0.78706 0.78249 0.78978 1.19818 1.18931 1.20790 1.20093 0.89906 0.98328 0.98856 1.21006 1.00885 0.91581 1.04362 0.89186 0.89386 0.89964 0.81840 0.81670 0.82509 0.84910 0.85697 0.73794 0.90330 0.90633 0.89900 0.94835 0.97871 0.92311 0.88489 0.87922 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.18 71.24 0.65 -0.46 16 2 C -0.09 -1.64 5.88 -19.88 -0.12 -1.76 16 3 C -0.05 -1.21 9.12 22.29 0.20 -1.00 16 4 C -0.64 -18.88 5.65 22.25 0.13 -18.76 16 5 S 2.50 68.17 5.80 -56.49 -0.33 67.85 16 6 C -0.63 -10.58 10.80 113.37 1.22 -9.35 16 7 O -0.96 -27.60 17.12 -127.65 -2.19 -29.79 16 8 O -0.99 -38.78 17.12 -127.65 -2.19 -40.96 16 9 C -0.08 -2.84 8.14 22.39 0.18 -2.66 16 10 C 0.14 4.39 6.41 38.15 0.24 4.63 16 11 N -0.67 -21.46 4.80 -317.19 -1.52 -22.98 16 12 C 0.69 30.10 8.08 179.06 1.45 31.54 16 13 O -0.61 -32.74 13.09 -3.99 -0.05 -32.80 16 14 N -0.62 -26.42 2.86 -869.31 -2.48 -28.90 16 15 C 0.07 2.15 10.16 127.77 1.30 3.45 16 16 C 0.28 14.89 5.16 85.63 0.44 15.33 16 17 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 19 C 0.01 0.78 5.46 84.65 0.46 1.24 16 20 N -0.92 -56.04 13.29 21.44 0.28 -55.76 16 21 Si 0.96 46.42 29.54 68.60 2.03 48.45 16 22 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 25 C -0.07 -1.51 5.90 -19.74 -0.12 -1.63 16 26 C -0.12 -1.57 8.62 71.24 0.61 -0.95 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 0.61 6.72 -2.39 -0.02 0.59 16 29 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.16 2.72 7.56 -2.91 -0.02 2.70 16 31 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.13 5.81 5.30 -2.91 -0.02 5.79 16 35 H 0.42 9.73 5.23 -92.71 -0.48 9.24 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 38 H 0.08 1.81 6.45 -2.39 -0.02 1.79 16 39 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 40 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 0.84 6.72 -2.39 -0.02 0.82 16 44 H 0.07 0.92 6.99 -2.38 -0.02 0.90 16 Total: -1.00 -91.25 374.46 1.01 -90.24 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.55 Total: 16.79 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 6.90 Total: -12.13 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -3.72 Total: -107.65 kcal Atomic # 8 Polarization: -99.12 SS G_CDS: -4.42 Total: -103.55 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 68.17 SS G_CDS: -0.33 Total: 67.85 kcal Total: -91.25 1.01 -90.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435082563.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.217 kcal (2) G-P(sol) polarization free energy of solvation -91.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds