Wall clock time and date at job start Sat Apr 11 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.96052 * 2 1 4 4 C 1.38252 * 120.13695 * 180.02562 * 3 2 1 5 5 S 1.76200 * 119.96260 * 180.02562 * 4 3 2 6 6 C 1.81409 * 104.45043 * 270.02179 * 5 4 3 7 7 O 1.42090 * 104.27818 * 26.09570 * 5 4 3 8 8 O 1.42100 * 104.27705 * 153.95422 * 5 4 3 9 9 C 1.38142 * 120.07341 * 0.02692 * 4 3 2 10 10 C 1.38844 * 119.92505 * 359.97438 * 9 4 3 11 11 N 1.39948 * 120.06446 * 179.97438 * 10 9 4 12 12 C 1.34770 * 120.00027 * 335.18217 * 11 10 9 13 13 O 1.21581 * 120.00112 * 354.38130 * 12 11 10 14 14 N 1.34778 * 119.99718 * 174.10310 * 12 11 10 15 15 C 1.46503 * 120.00249 * 180.27454 * 14 12 11 16 16 C 1.52998 * 109.47452 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00544 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99873 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99543 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99922 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47516 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47375 * 120.00310 * 21 19 17 24 24 H 1.48505 * 109.47197 * 239.99847 * 21 19 17 25 25 C 1.38087 * 119.96743 * 180.28316 * 2 1 3 26 26 C 1.50702 * 120.03599 * 359.96684 * 25 2 1 27 27 H 1.08998 * 109.47213 * 89.99890 * 1 2 3 28 28 H 1.08998 * 109.46922 * 209.99448 * 1 2 3 29 29 H 1.08997 * 109.47485 * 329.99709 * 1 2 3 30 30 H 1.07992 * 119.92876 * 0.04678 * 3 2 1 31 31 H 1.08996 * 109.46551 * 60.00382 * 6 5 4 32 32 H 1.09000 * 109.46894 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.46931 * 299.99858 * 6 5 4 34 34 H 1.07996 * 120.03684 * 179.97438 * 9 4 3 35 35 H 0.97000 * 119.99372 * 155.17875 * 11 10 9 36 36 H 0.96997 * 120.00081 * 0.27654 * 14 12 11 37 37 H 1.08997 * 109.46965 * 300.00144 * 15 14 12 38 38 H 1.08999 * 109.47014 * 59.99989 * 15 14 12 39 39 H 1.08997 * 109.47223 * 300.00071 * 16 15 14 40 40 H 1.08999 * 109.46951 * 60.00034 * 16 15 14 41 41 H 0.97008 * 119.99342 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47343 * 270.24109 * 26 25 2 43 43 H 1.09001 * 109.46816 * 30.23999 * 26 25 2 44 44 H 1.09005 * 109.46508 * 150.23685 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5803 1.2025 -0.0005 5 16 4.4556 2.7317 0.0002 6 6 4.6792 3.1261 -1.7564 7 8 3.5566 3.6498 0.6068 8 8 5.7037 2.4208 0.6041 9 6 4.2762 0.0092 -0.0016 10 6 3.5856 -1.1953 -0.0017 11 7 4.2877 -2.4060 -0.0033 12 6 5.5416 -2.4571 -0.4947 13 8 6.0255 -1.4781 -1.0290 14 7 6.2611 -3.5918 -0.3887 15 6 7.6263 -3.6457 -0.9175 16 6 8.2149 -5.0360 -0.6695 17 6 9.6190 -5.0914 -1.2140 18 1 10.0488 -4.2219 -1.6890 19 6 10.3550 -6.2523 -1.1057 20 7 9.8315 -7.3113 -0.5277 21 14 12.0957 -6.3209 -1.7799 22 1 12.4470 -5.0078 -2.3779 23 1 13.0414 -6.6326 -0.6783 24 1 12.1823 -7.3771 -2.8203 25 6 2.1968 -1.1962 -0.0059 26 6 1.4434 -2.5014 -0.0116 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5139 30 1 1.6560 2.1325 0.0008 31 1 3.7043 3.2155 -2.2355 32 1 5.2189 4.0684 -1.8513 33 1 5.2491 2.3313 -2.2375 34 1 5.3562 0.0132 -0.0025 35 1 3.8718 -3.2082 0.3493 36 1 5.8750 -4.3729 0.0376 37 1 7.6094 -3.4437 -1.9884 38 1 8.2399 -2.8971 -0.4162 39 1 8.2319 -5.2375 0.4016 40 1 7.6015 -5.7848 -1.1704 41 1 10.3495 -8.1279 -0.4511 42 1 1.2585 -2.8187 1.0147 43 1 0.4926 -2.3697 -0.5281 44 1 2.0342 -3.2596 -0.5256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435089351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:55 Heat of formation + Delta-G solvation = -80.376364 kcal Electronic energy + Delta-G solvation = -26987.152247 eV Core-core repulsion = 23031.791290 eV Total energy + Delta-G solvation = -3955.360957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89309 -39.13027 -37.20331 -36.05766 -35.46762 -34.80215 -33.79112 -32.94727 -31.14659 -29.73561 -29.45099 -27.77493 -26.88863 -24.91117 -22.69377 -22.08801 -21.00858 -20.49031 -19.17612 -18.44660 -17.71337 -16.57408 -16.40994 -16.33017 -16.15889 -15.64395 -15.35747 -15.13637 -14.63368 -14.55006 -14.45721 -13.78160 -13.55136 -13.50761 -13.40430 -13.34819 -13.13882 -12.97168 -12.60043 -12.34398 -12.30774 -12.18302 -12.13218 -12.09730 -11.69476 -11.29342 -11.25149 -11.10857 -10.87757 -10.65741 -10.59781 -10.37848 -9.98592 -9.64266 -9.30844 -9.05576 -8.71906 -8.45749 -8.10039 -6.13755 -4.16510 -0.08560 0.64663 1.12830 2.65742 2.71983 3.01086 3.26255 3.34164 3.39365 3.46261 3.80359 3.97721 4.28746 4.39913 4.44888 4.54779 4.57854 4.69114 4.75635 4.95171 5.03361 5.19554 5.23881 5.27897 5.31566 5.39022 5.44130 5.47258 5.60632 5.68127 5.87946 6.06521 6.12785 6.21105 6.24046 6.29018 6.66716 6.78123 6.81915 6.96564 7.48134 7.55319 7.84826 8.06425 8.24178 8.64871 8.89706 9.48717 10.97942 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.002499 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.768229 B =11203.672192 C =12841.053366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.051 4.051 4 C -0.639 4.639 5 S 2.501 3.499 6 C -0.649 4.649 7 O -0.943 6.943 8 O -0.932 6.932 9 C -0.039 4.039 10 C 0.164 3.836 11 N -0.687 5.687 12 C 0.696 3.304 13 O -0.577 6.577 14 N -0.728 5.728 15 C 0.137 3.863 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.074 4.074 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.169 0.831 35 H 0.407 0.593 36 H 0.396 0.604 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.596 15.219 -0.081 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.071 4.071 4 C -0.727 4.727 5 S 2.681 3.319 6 C -0.799 4.799 7 O -0.941 6.941 8 O -0.929 6.929 9 C -0.060 4.060 10 C 0.066 3.934 11 N -0.334 5.334 12 C 0.397 3.603 13 O -0.455 6.455 14 N -0.381 5.381 15 C 0.015 3.985 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.077 4.077 26 C -0.180 4.180 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.186 0.814 35 H 0.243 0.757 36 H 0.230 0.770 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.707 16.288 0.179 26.347 hybrid contribution 0.278 -1.641 -0.631 1.780 sum -20.430 14.648 -0.452 25.142 Atomic orbital electron populations 1.20823 0.90440 1.03240 1.02590 1.19582 0.96156 0.91816 1.01318 1.20672 0.91826 0.98500 0.96111 1.30400 1.05555 1.18858 1.17871 1.05091 0.74661 0.74379 0.77770 1.30207 1.12058 1.12467 1.25198 1.93563 1.65082 1.62056 1.73356 1.93620 1.42578 1.83547 1.73151 1.21301 1.02386 0.89175 0.93144 1.17374 0.89939 0.85600 1.00447 1.42763 1.15145 1.10432 1.65066 1.16072 0.80176 0.84693 0.79408 1.90850 1.70547 1.35082 1.48998 1.45610 1.17152 1.12574 1.62760 1.21726 0.77482 1.01492 0.97834 1.19337 0.96104 0.89219 0.97827 1.21069 0.98245 0.98215 1.38451 0.92088 1.24998 0.98613 0.95556 0.95141 1.69963 1.37358 1.02462 1.43522 0.86443 0.84133 0.78202 0.78711 1.19526 1.20898 1.20949 1.19704 0.91477 0.96041 1.00480 1.20880 1.00515 0.93736 1.02866 0.90914 0.91092 0.91079 0.84329 0.85149 0.85110 0.84514 0.81375 0.75654 0.77049 0.92390 0.92230 0.95860 0.95938 0.92870 0.90407 0.90357 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.18 36.01 0.33 -0.37 16 2 C -0.09 -0.82 5.88 -104.65 -0.62 -1.44 16 3 C -0.05 -0.52 9.12 -39.55 -0.36 -0.88 16 4 C -0.64 -7.56 5.65 -39.61 -0.22 -7.79 16 5 S 2.50 26.62 5.80 -107.50 -0.62 25.99 16 6 C -0.65 -4.37 10.80 101.05 1.09 -3.28 16 7 O -0.94 -11.71 17.12 -57.54 -0.99 -12.70 16 8 O -0.93 -13.86 17.12 -57.54 -0.99 -14.84 16 9 C -0.04 -0.55 8.14 -39.39 -0.32 -0.88 16 10 C 0.16 2.12 6.41 -83.69 -0.54 1.58 16 11 N -0.69 -8.63 4.98 -14.23 -0.07 -8.70 16 12 C 0.70 11.49 8.37 -86.92 -0.73 10.76 16 13 O -0.58 -11.37 13.51 5.29 0.07 -11.30 16 14 N -0.73 -12.03 5.56 -65.23 -0.36 -12.39 16 15 C 0.14 2.80 5.61 -4.04 -0.02 2.78 16 16 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 17 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.07 -0.75 5.90 -104.44 -0.62 -1.36 16 26 C -0.12 -0.86 8.62 36.01 0.31 -0.55 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.36 6.72 -51.93 -0.35 0.01 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.14 1.11 7.56 -52.49 -0.40 0.71 16 31 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.14 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.17 2.81 5.30 -52.49 -0.28 2.53 16 35 H 0.41 3.73 7.43 -40.82 -0.30 3.43 16 36 H 0.40 5.48 8.49 -40.82 -0.35 5.13 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.44 6.72 -51.93 -0.35 0.09 16 44 H 0.07 0.48 6.99 -51.93 -0.36 0.12 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -36.87 378.19 -9.94 -46.81 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.15 Total: 4.53 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.24 Total: -14.21 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.30 Total: -46.09 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.90 Total: -38.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 26.62 SS G_CDS: -0.62 Total: 25.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.87 -9.94 -46.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435089351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.570 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds