Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99693 * 2 1 4 4 H 1.48500 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47510 * 300.00072 * 3 2 1 6 6 H 1.48500 * 109.47340 * 60.00119 * 3 2 1 7 7 C 1.37869 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00276 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46991 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97624 * 125.02899 * 10 9 7 12 12 C 1.35244 * 107.85999 * 179.97438 * 11 10 9 13 13 C 1.40401 * 107.86868 * 359.97438 * 12 11 10 14 14 N 1.40193 * 125.97600 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99728 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99982 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.46509 * 119.99703 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46993 * 179.97438 * 18 17 15 20 20 N 1.30503 * 125.64631 * 90.02663 * 19 18 17 21 21 C 1.34130 * 109.25372 * 179.97438 * 20 19 18 22 22 C 1.34669 * 108.02190 * 0.02562 * 21 20 19 23 23 N 1.35040 * 125.64982 * 269.72523 * 19 18 17 24 24 C 1.46496 * 126.40113 * 359.97438 * 23 19 18 25 25 F 1.39895 * 109.47243 * 210.00804 * 24 23 19 26 26 F 1.39905 * 109.46760 * 330.00600 * 24 23 19 27 27 N 1.31214 * 108.05413 * 359.97438 * 13 12 11 28 28 H 0.96997 * 120.00114 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46761 * 59.99913 * 9 7 2 30 30 H 1.08999 * 109.46517 * 300.00031 * 9 7 2 31 31 H 1.07999 * 126.06908 * 359.96859 * 11 10 9 32 32 H 1.07998 * 126.06683 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00586 * 179.97438 * 14 13 12 34 34 H 0.96999 * 120.00560 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47295 * 299.99904 * 18 17 15 36 36 H 1.08996 * 109.46572 * 60.00480 * 18 17 15 37 37 H 1.08000 * 125.98805 * 180.02562 * 21 20 19 38 38 H 1.08000 * 126.58998 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.46973 * 90.00301 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2418 -4.6226 0.8938 12 6 3.2602 -5.4430 0.5492 13 6 3.8682 -4.9152 -0.6011 14 7 4.9644 -5.4659 -1.2796 15 6 5.5289 -6.6059 -0.8346 16 8 5.0878 -7.1565 0.1557 17 7 6.5825 -7.1357 -1.4872 18 6 7.1965 -8.3746 -1.0031 19 6 8.3453 -8.7509 -1.9030 20 7 9.5859 -8.3764 -1.7494 21 6 10.3311 -8.8996 -2.7344 22 6 9.5213 -9.6255 -3.5287 23 7 8.2624 -9.5362 -2.9985 24 6 7.0512 -10.1716 -3.5231 25 9 7.3925 -11.3654 -4.1675 26 9 6.1739 -10.4453 -2.4681 27 7 3.2310 -3.8163 -0.9300 28 1 -0.4850 0.8400 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 1.5775 -4.7526 1.7354 32 1 3.5538 -6.3442 1.0668 33 1 5.3161 -5.0269 -2.0699 34 1 6.9342 -6.6967 -2.2775 35 1 7.5636 -8.2256 0.0124 36 1 6.4550 -9.1735 -1.0078 37 1 11.3941 -8.7628 -2.8671 38 1 9.8105 -10.1765 -4.4114 39 1 6.5674 -9.5008 -4.2331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438316062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = 42.013560 kcal Electronic energy + Delta-G solvation = -28118.644639 eV Core-core repulsion = 23543.502928 eV Total energy + Delta-G solvation = -4575.141711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.120 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.06507 -48.18276 -42.72385 -40.72381 -39.56295 -35.40415 -34.63785 -34.14506 -33.34122 -31.26947 -30.40490 -29.28011 -27.41092 -26.66443 -25.98007 -23.12045 -22.17261 -21.80433 -21.27160 -20.43568 -19.94141 -18.99207 -18.82519 -18.08924 -17.75466 -16.80613 -16.56551 -16.09321 -15.93390 -15.45941 -15.26845 -14.96898 -14.82050 -14.69701 -14.61111 -14.41263 -14.21882 -13.99779 -13.86795 -13.26007 -13.05598 -12.80466 -12.74733 -12.31331 -12.21136 -11.76311 -11.05287 -10.88063 -10.72786 -10.63417 -10.43938 -10.26098 -10.14870 -9.73193 -9.49620 -9.37395 -9.16635 -8.63080 -8.10352 -7.41885 -6.23736 -4.28556 1.03787 1.39585 2.19708 2.63664 2.65721 2.83231 3.09048 3.22839 3.30410 3.35609 3.37018 3.56098 3.66116 3.75562 3.82517 3.99441 4.25671 4.36299 4.72417 4.87128 5.11502 5.14589 5.28463 5.44260 5.53565 5.79689 5.99108 6.01888 6.19366 6.23861 6.51852 6.55036 6.86242 6.98291 7.09243 7.36088 7.48055 7.70188 7.80239 7.94604 8.07197 8.51067 8.66368 8.81916 9.37149 10.85001 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.002001 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.057465 B =13986.813574 C =14559.362908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.285 4.285 13 C 0.275 3.725 14 N -0.641 5.641 15 C 0.718 3.282 16 O -0.562 6.562 17 N -0.743 5.743 18 C 0.213 3.787 19 C 0.209 3.791 20 N -0.456 5.456 21 C -0.015 4.015 22 C -0.034 4.034 23 N -0.511 5.511 24 C 0.483 3.517 25 F -0.178 7.178 26 F -0.169 7.169 27 N -0.307 5.307 28 H 0.266 0.734 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.398 0.602 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.573 -22.015 -9.596 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.021 3.979 14 N -0.291 5.291 15 C 0.417 3.583 16 O -0.437 6.437 17 N -0.401 5.401 18 C 0.088 3.912 19 C -0.052 4.052 20 N -0.174 5.174 21 C -0.161 4.161 22 C -0.164 4.164 23 N -0.207 5.207 24 C 0.348 3.652 25 F -0.159 7.159 26 F -0.151 7.151 27 N -0.138 5.138 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.241 0.759 34 H 0.232 0.768 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.198 0.802 38 H 0.203 0.797 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.000 -20.968 -8.905 27.838 hybrid contribution 0.599 0.013 -0.960 1.132 sum 16.599 -20.954 -9.864 28.494 Atomic orbital electron populations 1.69927 1.06034 1.27498 1.49945 1.24948 0.94988 0.99565 0.94658 0.86277 0.80080 0.82480 0.77697 1.19555 1.20728 1.20770 1.21303 0.94041 0.89375 1.51788 0.91246 1.19741 0.85619 0.81323 0.99251 1.49056 1.23280 1.19728 1.18155 1.22562 1.00335 0.90190 0.96782 1.21510 1.01965 1.06491 1.01721 1.18761 0.90636 0.94137 0.94387 1.41312 1.31517 1.24869 1.31397 1.15465 0.79750 0.80262 0.82833 1.90893 1.64267 1.62251 1.26256 1.44920 1.34133 1.27800 1.33255 1.19687 0.89173 0.86906 0.95458 1.23324 0.95527 0.96850 0.89538 1.70393 1.00353 1.22922 1.23696 1.22530 1.00375 1.00126 0.93090 1.22833 0.82512 1.07360 1.03713 1.46847 1.09245 1.39983 1.24637 1.21636 0.78545 0.82175 0.82828 1.93129 1.92428 1.49318 1.81047 1.93102 1.68140 1.94274 1.59544 1.77324 1.03896 1.16209 1.16382 0.92402 0.93758 0.92519 0.81500 0.82125 0.75853 0.76831 0.87742 0.88056 0.80160 0.79685 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.63 9.24 -34.44 -0.32 -14.95 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.54 6.26 -5.19 -0.03 6.50 16 10 N -0.32 -7.41 3.67 -62.56 -0.23 -7.64 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.64 9.61 -39.83 -0.38 -6.02 16 13 C 0.27 5.45 8.11 -154.36 -1.25 4.20 16 14 N -0.64 -9.63 5.46 -15.51 -0.08 -9.72 16 15 C 0.72 10.08 8.53 -86.92 -0.74 9.34 16 16 O -0.56 -9.74 13.47 5.29 0.07 -9.67 16 17 N -0.74 -7.20 5.55 -66.41 -0.37 -7.57 16 18 C 0.21 1.99 5.89 -5.19 -0.03 1.96 16 19 C 0.21 1.81 7.17 -155.41 -1.12 0.69 16 20 N -0.46 -4.56 11.25 -10.81 -0.12 -4.69 16 21 C -0.01 -0.10 11.87 -17.81 -0.21 -0.32 16 22 C -0.03 -0.19 11.16 -16.56 -0.18 -0.38 16 23 N -0.51 -3.30 3.14 -119.65 -0.38 -3.68 16 24 C 0.48 2.29 6.44 59.84 0.39 2.67 16 25 F -0.18 -0.97 17.05 2.25 0.04 -0.93 16 26 F -0.17 -1.19 14.50 2.25 0.03 -1.16 16 27 N -0.31 -7.00 12.42 31.44 0.39 -6.61 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 32 H 0.16 3.10 5.91 -52.49 -0.31 2.79 16 33 H 0.41 4.89 8.84 -40.82 -0.36 4.53 16 34 H 0.40 2.94 8.48 -40.82 -0.35 2.59 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.94 5.56 -51.93 -0.29 0.66 16 37 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.19 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.16 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -35.26 353.39 -7.59 -42.85 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.81 Total: 5.60 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -4.18 Total: 6.11 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.05 Total: -64.46 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.07 Total: -2.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.26 -7.59 -42.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438316062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.868 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds