Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99693 * 2 1 4 4 H 1.48500 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47510 * 300.00072 * 3 2 1 6 6 H 1.48500 * 109.47340 * 60.00119 * 3 2 1 7 7 C 1.37869 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00276 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46991 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97624 * 125.02899 * 10 9 7 12 12 C 1.35244 * 107.85999 * 179.97438 * 11 10 9 13 13 C 1.40401 * 107.86868 * 359.97438 * 12 11 10 14 14 N 1.40193 * 125.97600 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99728 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99982 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.46509 * 119.99703 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46993 * 179.97438 * 18 17 15 20 20 N 1.30503 * 125.64631 * 90.02663 * 19 18 17 21 21 C 1.34130 * 109.25372 * 179.97438 * 20 19 18 22 22 C 1.34669 * 108.02190 * 0.02562 * 21 20 19 23 23 N 1.35040 * 125.64982 * 269.72523 * 19 18 17 24 24 C 1.46496 * 126.40113 * 359.97438 * 23 19 18 25 25 F 1.39895 * 109.47243 * 210.00804 * 24 23 19 26 26 F 1.39905 * 109.46760 * 330.00600 * 24 23 19 27 27 N 1.31214 * 108.05413 * 359.97438 * 13 12 11 28 28 H 0.96997 * 120.00114 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46761 * 59.99913 * 9 7 2 30 30 H 1.08999 * 109.46517 * 300.00031 * 9 7 2 31 31 H 1.07999 * 126.06908 * 359.96859 * 11 10 9 32 32 H 1.07998 * 126.06683 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00586 * 179.97438 * 14 13 12 34 34 H 0.96999 * 120.00560 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47295 * 299.99904 * 18 17 15 36 36 H 1.08996 * 109.46572 * 60.00480 * 18 17 15 37 37 H 1.08000 * 125.98805 * 180.02562 * 21 20 19 38 38 H 1.08000 * 126.58998 * 180.02562 * 22 21 20 39 39 H 1.08997 * 109.46973 * 90.00301 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2418 -4.6226 0.8938 12 6 3.2602 -5.4430 0.5492 13 6 3.8682 -4.9152 -0.6011 14 7 4.9644 -5.4659 -1.2796 15 6 5.5289 -6.6059 -0.8346 16 8 5.0878 -7.1565 0.1557 17 7 6.5825 -7.1357 -1.4872 18 6 7.1965 -8.3746 -1.0031 19 6 8.3453 -8.7509 -1.9030 20 7 9.5859 -8.3764 -1.7494 21 6 10.3311 -8.8996 -2.7344 22 6 9.5213 -9.6255 -3.5287 23 7 8.2624 -9.5362 -2.9985 24 6 7.0512 -10.1716 -3.5231 25 9 7.3925 -11.3654 -4.1675 26 9 6.1739 -10.4453 -2.4681 27 7 3.2310 -3.8163 -0.9300 28 1 -0.4850 0.8400 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 1.5775 -4.7526 1.7354 32 1 3.5538 -6.3442 1.0668 33 1 5.3161 -5.0269 -2.0699 34 1 6.9342 -6.6967 -2.2775 35 1 7.5636 -8.2256 0.0124 36 1 6.4550 -9.1735 -1.0078 37 1 11.3941 -8.7628 -2.8671 38 1 9.8105 -10.1765 -4.4114 39 1 6.5674 -9.5008 -4.2331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438316062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = 17.494767 kcal Electronic energy + Delta-G solvation = -28119.707854 eV Core-core repulsion = 23543.502928 eV Total energy + Delta-G solvation = -4576.204926 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.120 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.48107 -48.60659 -43.26459 -42.19934 -40.86517 -36.52904 -35.93773 -35.25454 -34.66325 -32.83903 -31.35814 -30.87011 -28.65004 -27.78329 -26.71007 -24.94794 -23.10505 -22.65901 -21.96526 -21.88254 -21.25109 -19.73981 -19.25509 -18.94648 -18.67376 -18.37337 -18.09500 -17.27645 -16.95443 -16.58681 -16.12639 -16.06745 -15.81879 -15.55854 -15.48315 -15.34073 -15.24114 -14.93636 -14.51191 -14.44786 -14.27157 -13.96993 -13.78765 -13.75675 -13.53879 -13.25979 -12.91817 -12.72178 -12.29396 -12.04946 -11.64509 -11.38418 -11.30109 -11.20339 -11.16245 -10.71080 -10.35185 -9.70624 -9.69257 -9.04198 -8.31576 -6.45403 0.45624 0.91194 1.10111 1.21960 1.38104 1.39613 1.52718 1.70662 1.88051 2.20470 2.37490 2.40319 2.51398 2.93667 2.99694 3.00423 3.17149 3.44486 3.55253 3.99269 4.23368 4.30556 4.35444 4.50686 4.61517 4.78069 4.92002 4.93770 4.97347 5.03236 5.06394 5.31247 5.56218 5.58449 5.64174 5.73816 5.86451 5.98655 6.31637 6.64101 6.71945 6.81658 7.14310 7.24566 7.36635 8.76021 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.021222 B = 0.002001 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.057465 B =13986.813574 C =14559.362908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.291 4.291 13 C 0.285 3.715 14 N -0.633 5.633 15 C 0.720 3.280 16 O -0.594 6.594 17 N -0.719 5.719 18 C 0.219 3.781 19 C 0.194 3.806 20 N -0.489 5.489 21 C -0.037 4.037 22 C -0.015 4.015 23 N -0.509 5.509 24 C 0.479 3.521 25 F -0.181 7.181 26 F -0.185 7.185 27 N -0.347 5.347 28 H 0.272 0.728 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.200 0.800 32 H 0.168 0.832 33 H 0.421 0.579 34 H 0.412 0.588 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.199 0.801 38 H 0.219 0.781 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.882 -22.620 -10.698 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.092 4.092 12 C -0.322 4.322 13 C 0.029 3.971 14 N -0.285 5.285 15 C 0.419 3.581 16 O -0.471 6.471 17 N -0.377 5.377 18 C 0.094 3.906 19 C -0.067 4.067 20 N -0.209 5.209 21 C -0.183 4.183 22 C -0.145 4.145 23 N -0.204 5.204 24 C 0.345 3.655 25 F -0.162 7.162 26 F -0.166 7.166 27 N -0.178 5.178 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.186 0.814 33 H 0.258 0.742 34 H 0.249 0.751 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.216 0.784 38 H 0.236 0.764 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 17.342 -21.605 -10.046 29.469 hybrid contribution 0.313 0.025 -0.664 0.734 sum 17.655 -21.580 -10.710 29.868 Atomic orbital electron populations 1.69999 1.07171 1.28663 1.50134 1.25732 0.95848 1.02704 0.93987 0.85303 0.78398 0.78450 0.78274 1.19957 1.19825 1.19595 1.21430 0.93358 0.90993 1.52529 0.93007 1.19332 0.85676 0.81494 0.98126 1.48812 1.23959 1.20332 1.19651 1.23160 1.00512 0.88839 0.96729 1.21692 1.02010 1.06673 1.01871 1.19048 0.90815 0.93037 0.94178 1.41286 1.30422 1.25167 1.31631 1.15552 0.80239 0.79736 0.82595 1.90866 1.65434 1.63014 1.27804 1.44714 1.32427 1.27601 1.32928 1.19586 0.89516 0.86352 0.95161 1.22924 0.94888 0.98365 0.90563 1.70322 1.01263 1.24128 1.25141 1.22963 1.01480 1.00834 0.93024 1.23378 0.81636 1.05808 1.03713 1.46964 1.10204 1.39319 1.23942 1.22285 0.77830 0.82554 0.82837 1.93124 1.92430 1.49769 1.80912 1.93070 1.68595 1.94418 1.60546 1.77244 1.04982 1.18017 1.17541 0.91871 0.95993 0.92368 0.78268 0.81446 0.74161 0.75130 0.89132 0.87893 0.78395 0.76428 0.78567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 13.29 21.44 0.28 -51.83 16 2 C 0.02 0.97 5.46 84.65 0.46 1.43 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.76 9.24 25.60 0.24 -30.52 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.27 14.11 6.26 85.64 0.54 14.65 16 10 N -0.35 -16.19 3.67 -351.84 -1.29 -17.48 16 11 C 0.06 2.21 11.44 83.52 0.96 3.16 16 12 C -0.29 -11.35 9.61 22.11 0.21 -11.14 16 13 C 0.28 11.22 8.11 133.31 1.08 12.30 16 14 N -0.63 -18.48 5.46 -321.23 -1.75 -20.24 16 15 C 0.72 19.54 8.53 179.05 1.53 21.07 16 16 O -0.59 -20.28 13.47 -4.00 -0.05 -20.33 16 17 N -0.72 -13.04 5.55 -482.27 -2.68 -15.72 16 18 C 0.22 3.93 5.89 85.63 0.50 4.44 16 19 C 0.19 3.12 7.17 138.13 0.99 4.11 16 20 N -0.49 -9.36 11.25 -188.13 -2.12 -11.47 16 21 C -0.04 -0.47 11.87 83.52 0.99 0.52 16 22 C -0.02 -0.13 11.16 83.09 0.93 0.80 16 23 N -0.51 -5.46 3.14 -532.45 -1.67 -7.13 16 24 C 0.48 3.35 6.44 127.77 0.82 4.18 16 25 F -0.18 -1.52 17.05 44.97 0.77 -0.76 16 26 F -0.18 -2.33 14.50 44.97 0.65 -1.67 16 27 N -0.35 -15.98 12.42 -54.43 -0.68 -16.65 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 31 H 0.20 6.21 8.06 -2.91 -0.02 6.19 16 32 H 0.17 6.35 5.91 -2.91 -0.02 6.33 16 33 H 0.42 9.65 8.84 -92.71 -0.82 8.83 16 34 H 0.41 5.33 8.48 -92.71 -0.79 4.54 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 1.85 5.56 -2.39 -0.01 1.84 16 37 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.22 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.20 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -76.81 353.39 2.28 -74.53 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.46 Total: 18.06 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 9.25 Total: 24.99 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -9.90 Total: -140.52 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 1.42 Total: -2.43 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.81 2.28 -74.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438316062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.024 kcal (2) G-P(sol) polarization free energy of solvation -76.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds